Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.0e-111 405.2 205 100.0
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.5e-110 402.1 205 99.0
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 3.9e-87 325.1 202 81.7
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.9e-70 269.6 197 74.1
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 5.6e-70 268.1 206 73.8
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.3e-55 219.5 206 63.6
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.3e-55 219.5 206 63.6
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 1.3e-53 213.8 206 59.2
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.8e-52 209.9 204 61.8
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.9e-52 208.0 206 59.2
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.9e-52 208.0 206 59.2
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 7.7e-51 204.5 196 58.7
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.7e-50 203.4 195 60.5
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.1e-49 200.7 206 58.3
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 1.0e-47 194.1 199 55.8
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 3.0e-47 192.6 198 56.1
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 6.7e-47 191.4 205 56.6
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 3.3e-46 189.1 205 56.1
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 3.3e-46 189.1 198 56.6
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 1.3e-45 187.2 199 55.8
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 1.3e-45 187.2 199 55.8
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.7e-45 186.8 206 56.8
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 4.8e-45 185.3 205 54.1
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 8.2e-45 184.5 198 55.1
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 1.1e-44 184.1 198 54.5
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 1.1e-44 184.1 200 56.5
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 2.4e-44 183.0 199 55.3
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.2e-43 180.6 196 55.6
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 4.5e-43 178.7 199 52.8
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 4.5e-43 178.7 206 53.4
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 4.5e-43 178.7 198 53.5
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 4.5e-43 178.7 198 54.5
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 5.9e-43 178.3 206 53.9
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.0e-42 177.6 198 54.0
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.7e-42 176.8 200 53.5
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 1.7e-42 176.8 199 56.3
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.2e-42 176.4 199 56.8
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 6.5e-42 174.9 206 51.9
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 6.5e-42 174.9 204 54.4
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.4e-41 173.7 206 52.9
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 1.9e-41 173.3 205 51.7
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.9e-41 173.3 206 50.5
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 1.9e-41 173.3 206 52.9
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 7.2e-41 171.4 206 51.5
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.4e-41 171.0 198 53.0
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.7e-40 168.7 198 52.0
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 4.7e-40 168.7 198 52.0
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 6.1e-40 168.3 207 51.7
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 7.9e-40 167.9 206 51.9
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.0e-39 166.0 206 49.5
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.0e-39 166.0 205 52.7
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.9e-39 165.6 200 53.0
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.2e-39 165.2 198 53.0
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 6.7e-39 164.9 201 50.7
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.1e-38 164.1 198 51.0
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 3.3e-38 162.5 196 51.5
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 3.3e-38 162.5 196 52.0
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 5.7e-38 161.8 191 56.0
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 1.7e-37 160.2 208 51.0
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.7e-37 159.1 198 51.5
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 3.7e-37 159.1 198 51.0
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 1.4e-36 157.1 206 52.4
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.8e-36 156.8 208 52.9
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 1.8e-36 156.8 199 50.3
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 1.8e-36 156.8 192 55.7
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.8e-36 156.8 191 50.3
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 4.1e-36 155.6 198 51.0
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 1.2e-35 154.1 182 51.6
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 7.7e-35 151.4 206 50.0
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.3e-34 150.6 190 53.2
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 1.7e-34 150.2 204 49.5
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 2.9e-34 149.4 191 47.6
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 3.8e-34 149.1 205 49.3
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 5.0e-34 148.7 212 50.0
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 5.0e-34 148.7 198 50.5
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 5.0e-34 148.7 198 47.5
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.5e-34 148.3 190 52.6
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 1.1e-33 147.5 198 46.5
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.5e-33 147.1 199 51.3
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 1.5e-33 147.1 198 51.0
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 1.9e-33 146.7 197 50.8
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 3.2e-33 146.0 199 51.3
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.2e-33 146.0 190 51.6
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 4.2e-33 145.6 200 51.5
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 5.5e-33 145.2 198 51.0
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.2e-32 144.1 199 51.3
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 3.6e-32 142.5 188 48.9
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 3.6e-32 142.5 198 45.5
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 8.0e-32 141.4 188 53.2
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 8.0e-32 141.4 195 46.7
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.4e-31 140.6 188 52.7
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.4e-31 140.6 177 49.7
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.8e-31 140.2 199 49.2
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.3e-31 139.8 199 49.2
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.3e-31 139.8 199 49.2
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 5.2e-31 138.7 204 48.5
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 4.4e-30 135.6 197 43.7
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 7.5e-30 134.8 203 44.3
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 2.2e-29 133.3 194 49.5
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 2.2e-29 133.3 183 49.2
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 2.2e-29 133.3 194 47.4
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 2.2e-29 133.3 203 44.3
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 3.7e-29 132.5 206 45.1
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 3.7e-29 132.5 201 47.8
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 4.8e-29 132.1 182 48.9
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 6.3e-29 131.7 199 48.2
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.4e-28 130.6 204 42.2
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 1.4e-28 130.6 192 44.8
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 2.4e-28 129.8 190 51.1
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 3.1e-28 129.4 205 44.9
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 5.3e-28 128.6 190 49.5
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 5.3e-28 128.6 192 44.8
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 7.0e-28 128.3 195 44.6
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 9.1e-28 127.9 200 47.5
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 1.2e-27 127.5 184 49.5
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.2e-27 127.5 197 43.1
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 1.6e-27 127.1 205 46.3
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 2.0e-27 126.7 205 44.9
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 2.7e-27 126.3 207 44.4
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.7e-27 126.3 191 50.8
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 4.5e-27 125.6 201 47.3
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 4.5e-27 125.6 249 39.8
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 5.9e-27 125.2 201 43.3
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 1.0e-26 124.4 185 51.4
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.0e-26 124.4 193 43.0
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 1.3e-26 124.0 195 48.7
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 2.2e-26 123.2 189 47.6
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 2.2e-26 123.2 201 42.8
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 2.2e-26 123.2 201 44.8
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.2e-26 123.2 189 46.6
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.8e-26 122.5 195 49.2
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 5.0e-26 122.1 206 48.1
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 8.5e-26 121.3 197 41.1
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 8.5e-26 121.3 190 42.1
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.5e-25 120.6 257 40.1
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.5e-25 120.6 189 46.0
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 2.5e-25 119.8 199 42.2
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 5.5e-25 118.6 182 43.4
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.2e-25 118.2 192 41.1
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.6e-24 117.1 192 40.6
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.6e-24 117.1 192 41.1
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.6e-24 117.1 196 48.5
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 8.0e-24 114.8 192 40.1
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 1.0e-23 114.4 201 40.8
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 1.8e-23 113.6 141 46.1
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 4.0e-23 112.5 185 45.9
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 5.2e-23 112.1 201 41.3
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-22 110.9 120 55.8
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 1.2e-22 110.9 192 40.1
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.2e-22 110.9 192 40.1
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 3.4e-22 109.4 89 75.3
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 3.4e-22 109.4 89 75.3
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 3.4e-22 109.4 111 63.1
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 9.8e-22 107.8 190 45.3
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 9.8e-22 107.8 201 40.8
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 1.3e-21 107.5 140 52.1
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 2.2e-21 106.7 205 42.0
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 3.7e-21 105.9 210 39.0
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 4.1e-20 102.4 205 44.4
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 7.0e-20 101.7 199 39.7
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.0e-19 100.1 103 62.1
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 1.0e-18 97.8 87 71.3
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 2.3e-18 96.7 197 38.6
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 5.0e-18 95.5 199 38.7
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 6.5e-18 95.1 202 38.1
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 2.5e-17 93.2 126 42.1
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 4.2e-17 92.4 203 39.4
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 1.2e-16 90.9 67 82.1
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.1e-16 90.1 210 36.7
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 2.8e-16 89.7 202 38.1
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 8.0e-16 88.2 100 59.0
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 1.4e-15 87.4 118 45.8
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 4.0e-15 85.9 190 37.9
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.7e-13 80.5 192 38.0
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 2.8e-13 79.7 87 60.9
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 7.0e-12 75.1 192 30.7
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 1.6e-11 73.9 216 35.2
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 3.5e-11 72.8 103 49.5
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 5.0e-10 68.9 207 33.3
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 1.1e-09 67.8 199 36.7
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 9.5e-09 64.7 189 34.9
BolC2t08091H Brassica oleracea HOM05D002831 ORTHO05D004341 8.9e-07 58.2 59 67.8
Nn1g01625 Nelumbo nucifera HOM05D002831 ORTHO05D004341 8.9e-07 58.2 42 85.7
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.6e-06 56.6 205 29.8
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 7.5e-06 55.1 181 31.5


User provided reference genes

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