Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 0.0e+00 1161.4 596 100.0
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 0.0e+00 1098.6 596 94.6
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 1.7e-276 955.7 592 80.2
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 6.1e-242 840.9 591 74.3
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 5.8e-232 807.7 579 68.7
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.7e-215 751.9 565 66.0
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 6.6e-204 714.5 613 60.7
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 1.1e-201 707.2 610 60.3
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 3.4e-200 702.2 577 61.4
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 2.4e-198 696.0 584 61.6
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.6e-197 693.3 574 59.9
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 3.5e-197 692.2 606 59.9
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 6.0e-197 691.4 576 62.8
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 2.3e-196 689.5 619 58.3
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 2.3e-196 689.5 593 60.4
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 2.3e-196 689.5 626 59.3
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 3.9e-196 688.7 593 60.0
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 3.9e-196 688.7 611 60.1
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 1.9e-195 686.4 624 59.3
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 2.5e-195 686.0 604 60.3
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-195 685.6 576 62.0
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 4.3e-195 685.3 611 59.1
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 1.3e-194 683.7 565 61.9
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.6e-194 683.3 576 61.8
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 2.8e-194 682.6 563 62.7
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 2.4e-193 679.5 563 62.5
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 3.4e-192 675.6 583 60.0
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 9.9e-192 674.1 576 61.5
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 7.1e-190 667.9 578 60.7
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 4.6e-189 665.2 606 60.1
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 1.0e-188 664.1 565 61.4
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 3.0e-188 662.5 579 58.7
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 6.7e-188 661.4 574 58.7
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 6.7e-188 661.4 559 60.3
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 8.7e-188 661.0 568 60.6
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 1.1e-187 660.6 591 58.0
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 1.9e-187 659.8 569 60.1
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 1.9e-187 659.8 618 57.6
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 2.5e-187 659.4 568 60.4
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 2.5e-187 659.4 564 60.1
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.3e-187 659.1 594 59.3
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 4.3e-187 658.7 576 60.1
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 4.3e-187 658.7 568 59.9
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 4.3e-187 658.7 606 56.4
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 5.6e-187 658.3 568 59.9
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 5.6e-187 658.3 574 60.3
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.3e-186 657.1 599 56.6
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 3.7e-186 655.6 572 60.3
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 1.1e-185 654.1 616 57.1
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 5.3e-185 651.7 560 59.6
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 6.9e-185 651.4 567 59.8
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.9e-185 651.4 566 61.0
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 9.0e-185 651.0 574 59.4
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 2.0e-184 649.8 574 57.8
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 5.8e-184 648.3 599 56.9
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 9.9e-184 647.5 587 58.6
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 1.9e-182 643.3 574 59.9
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 5.5e-182 641.7 495 66.3
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 5.5e-182 641.7 558 59.1
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 9.3e-182 641.0 560 60.2
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 1.2e-181 640.6 586 57.3
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 1.2e-181 640.6 569 59.1
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 2.1e-181 639.8 564 58.7
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 3.5e-181 639.0 581 57.8
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 4.6e-181 638.6 579 57.7
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.0e-180 637.5 615 55.1
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 3.0e-180 636.0 591 58.4
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.5e-179 633.6 561 59.7
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 4.3e-179 632.1 582 56.7
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 1.6e-178 630.2 497 63.2
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 9.0e-177 624.4 573 58.6
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 3.4e-176 622.5 570 58.1
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 2.9e-175 619.4 543 58.9
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 5.5e-174 615.1 629 53.7
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 7.1e-174 614.8 492 61.6
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.1e-173 613.2 478 64.4
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 6.0e-173 611.7 495 61.0
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 2.3e-172 609.8 607 54.2
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.9e-171 606.7 604 52.6
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 9.7e-171 604.4 572 54.9
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-166 590.9 594 55.4
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 4.2e-166 589.0 510 58.6
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 2.5e-163 579.7 493 61.5
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 7.4e-163 578.2 572 53.5
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 3.1e-161 572.8 504 59.3
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 4.2e-158 562.4 608 52.6
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.4e-156 557.4 467 61.5
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 9.7e-155 551.2 513 56.9
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 5.9e-152 542.0 581 51.6
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 2.7e-149 533.1 459 55.1
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 3.6e-149 532.7 564 50.4
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 2.3e-148 530.0 451 60.1
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 6.7e-148 528.5 474 53.8
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.1e-145 521.2 489 55.6
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 2.4e-145 520.0 426 61.5
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 2.2e-143 513.5 403 62.5
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 3.8e-127 459.5 584 44.3
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 7.2e-126 455.3 349 64.2
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 2.3e-124 450.3 491 47.3
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 7.0e-121 438.7 584 44.3
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 4.5e-120 436.0 583 42.7
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 1.9e-113 414.1 336 60.4
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 7.8e-112 408.7 373 57.6
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 2.9e-106 390.2 487 48.7
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 1.9e-97 360.9 397 45.8
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 6.0e-96 355.9 496 40.9
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 4.9e-90 336.3 292 59.2
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 3.0e-87 327.0 303 58.4
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 9.6e-70 268.9 334 42.2
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 5.8e-67 259.6 209 59.3
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 1.5e-62 245.0 393 36.9
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 2.4e-60 237.7 183 59.0
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 2.0e-59 234.6 208 58.2
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-58 231.9 168 66.1
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-58 231.5 163 67.5
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-58 231.5 163 67.5
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.7e-58 231.5 163 67.5
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 7.1e-57 226.1 155 62.6
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 9.7e-54 215.7 218 51.8
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.3e-53 215.3 196 54.6
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 5.9e-51 206.5 196 55.1
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 8.5e-50 202.6 225 53.8
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.9e-41 174.9 169 53.3
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 2.7e-40 171.0 521 29.2
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 1.3e-34 152.1 142 52.1
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 2.5e-33 147.9 220 40.5
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 2.1e-32 144.8 363 29.5
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 2.8e-29 134.4 215 35.8
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 2.0e-27 128.3 89 66.3
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 2.6e-27 127.9 132 56.8
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 3.5e-27 127.5 136 45.6
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.7e-27 126.3 168 44.0
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.7e-27 126.3 168 44.0
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.7e-27 126.3 168 44.0
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.7e-27 126.3 168 44.0
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.7e-27 126.3 168 44.0
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.7e-27 126.3 168 44.0
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-26 125.9 163 44.8
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-26 125.9 163 44.8
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-26 125.9 163 44.8
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-26 125.9 163 44.8
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-26 125.9 163 44.8
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-26 125.9 163 44.8
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.0e-26 125.9 163 44.8
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 4.7e-24 117.1 134 50.7
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 8.3e-21 106.3 172 37.2
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 7.0e-20 103.2 91 62.6
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 3.5e-19 100.9 75 76.0
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 2.9e-18 97.8 106 42.5
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-13 82.4 141 33.3
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 3.1e-12 77.8 167 32.3
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 3.1e-12 77.8 45 71.1
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 7.0e-12 76.6 98 37.8
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 7.2e-09 66.6 76 44.7
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 1.2e-08 65.9 101 37.6
MBI04_g15062_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 2.0e-06 58.5 146 30.8


User provided reference genes

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