Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 2.5e-245 851.7 429 100.0
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 9.2e-232 806.6 464 88.8
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 4.6e-199 698.0 465 78.1
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.5e-170 601.7 378 80.2
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 1.1e-168 597.0 448 70.3
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 1.7e-153 546.6 419 68.5
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.5e-144 516.9 466 60.5
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 1.5e-144 516.9 465 60.6
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 1.6e-143 513.5 460 61.1
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 2.8e-143 512.7 462 60.2
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 3.6e-143 512.3 464 59.7
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 6.1e-143 511.5 462 60.6
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 6.8e-142 508.1 466 60.1
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 5.7e-141 505.0 457 58.9
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 5.7e-141 505.0 464 58.8
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 4.9e-140 501.9 463 59.2
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 6.3e-140 501.5 461 59.4
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 1.1e-139 500.7 461 59.7
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 3.1e-139 499.2 460 59.1
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 4.1e-139 498.8 463 58.3
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 4.1e-139 498.8 465 58.9
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 7.0e-139 498.0 470 58.7
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 3.5e-138 495.7 464 58.8
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 3.5e-138 495.7 465 59.1
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 3.5e-138 495.7 467 57.6
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.3e-137 493.0 464 58.0
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 1.1e-136 490.7 464 58.0
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 1.9e-136 490.0 463 59.4
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 2.1e-135 486.5 462 57.6
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 3.6e-135 485.7 462 56.1
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 3.6e-135 485.7 451 59.4
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 3.6e-135 485.7 463 58.5
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 4.7e-135 485.3 463 58.1
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.0e-134 484.2 459 59.5
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 1.4e-134 483.8 463 58.1
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 2.3e-134 483.0 449 58.8
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 2.3e-134 483.0 467 58.5
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 3.1e-134 482.6 463 58.1
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 2.0e-133 479.9 444 58.3
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 2.6e-133 479.6 462 57.8
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 5.8e-133 478.4 465 57.0
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 3.7e-132 475.7 473 54.8
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 3.7e-132 475.7 465 57.0
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 6.4e-132 474.9 471 58.0
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 1.1e-131 474.2 464 55.6
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.4e-131 473.8 472 57.0
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 2.4e-131 473.0 507 52.9
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 3.2e-131 472.6 456 57.9
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 5.4e-131 471.9 464 57.5
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 5.4e-131 471.9 462 57.1
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.3e-129 467.2 462 55.8
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 1.3e-129 467.2 449 57.0
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.7e-129 466.8 447 58.6
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 2.3e-129 466.5 462 55.8
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 6.6e-129 464.9 447 58.4
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.5e-128 463.8 458 57.4
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.9e-128 463.4 447 58.2
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.9e-128 463.4 458 57.4
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.6e-128 461.8 447 57.9
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.2e-127 460.7 450 55.6
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 1.2e-127 460.7 462 53.5
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.2e-127 460.7 448 55.4
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 2.8e-127 459.5 464 55.6
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 3.6e-127 459.1 464 55.6
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 8.0e-127 458.0 465 56.1
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 6.8e-126 454.9 437 56.8
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 1.5e-125 453.8 464 55.2
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.0e-125 453.4 466 56.0
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 2.6e-125 453.0 461 54.4
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 1.7e-124 450.3 440 55.7
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 2.2e-124 449.9 465 54.8
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 6.4e-124 448.4 465 55.5
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.9e-123 446.8 461 55.1
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 3.2e-123 446.0 465 55.3
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 7.0e-123 444.9 464 54.7
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 9.2e-123 444.5 440 55.2
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 1.2e-122 444.1 449 55.7
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 1.2e-122 444.1 462 53.0
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 1.6e-122 443.7 473 54.1
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 1.6e-122 443.7 464 55.2
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 2.1e-122 443.4 470 54.7
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 2.7e-122 443.0 467 54.6
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 3.5e-122 442.6 466 54.5
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 1.3e-121 440.7 463 54.0
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.7e-121 440.3 465 54.4
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 6.6e-121 438.3 451 55.2
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.9e-120 436.8 463 54.2
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.9e-120 436.8 463 54.2
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 9.5e-120 434.5 463 54.0
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 1.2e-119 434.1 463 54.0
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 1.2e-119 434.1 442 55.0
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 8.1e-119 431.4 462 53.7
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 4.0e-118 429.1 462 51.9
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 5.8e-117 425.2 463 53.1
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 3.7e-116 422.5 375 57.6
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 1.1e-112 411.0 459 50.8
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 1.8e-110 403.7 457 51.2
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 3.1e-110 402.9 448 51.3
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.6e-109 399.8 444 50.2
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 9.9e-109 397.9 462 49.8
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 2.4e-107 393.3 365 58.9
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 5.6e-104 382.1 460 51.1
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 4.8e-103 379.0 277 70.4
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 6.9e-102 375.2 289 67.8
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.0e-101 373.6 456 47.1
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 9.9e-101 371.3 472 49.2
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 3.2e-99 366.3 290 64.8
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.1e-90 337.0 383 50.7
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 5.6e-88 328.9 423 46.1
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 6.9e-70 268.9 244 58.6
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 2.9e-68 263.5 213 63.4
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 2.5e-64 250.4 292 48.6
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 4.8e-63 246.1 464 39.2
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 2.6e-61 240.4 448 41.3
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 2.9e-60 236.9 298 45.6
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 3.7e-55 219.9 475 33.7
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 2.2e-52 210.7 321 41.4
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 2.0e-45 187.6 488 29.9
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.2e-42 178.3 154 63.0
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 2.8e-39 167.2 150 54.0
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 3.7e-39 166.8 259 40.9
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 1.6e-34 151.4 194 38.7
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.4e-33 148.3 244 41.0
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 6.8e-25 119.4 175 42.9
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 6.3e-23 112.8 80 65.0
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.1e-18 97.8 80 58.8
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 3.7e-15 87.0 53 81.1
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 8.3e-07 59.3 48 60.4


User provided reference genes

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