Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 4.2e-116 421.4 216 100.0
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 2.8e-112 408.7 216 97.2
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.9e-101 372.1 220 85.0
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.3e-77 293.5 233 68.7
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 1.3e-77 293.5 233 68.7
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 2.3e-74 282.7 217 67.3
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 4.0e-74 282.0 214 67.8
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 1.2e-73 280.4 221 65.2
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 7.5e-73 277.7 228 63.6
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 9.8e-73 277.3 221 64.3
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 1.3e-72 276.9 219 65.3
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 1.7e-72 276.6 185 72.4
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.7e-72 276.6 214 64.5
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 4.9e-72 275.0 225 63.1
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 6.4e-72 274.6 211 65.9
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 6.4e-72 274.6 216 64.8
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 6.4e-72 274.6 217 65.0
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 1.1e-71 273.9 183 72.1
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.1e-71 273.9 221 64.3
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 2.4e-71 272.7 185 71.4
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.4e-71 272.7 221 64.3
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.4e-71 272.7 219 64.8
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.2e-71 272.3 221 63.8
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.2e-71 272.3 221 63.8
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 5.4e-71 271.6 213 65.3
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 9.2e-71 270.8 221 61.5
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.0e-70 269.6 219 63.9
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 2.0e-70 269.6 219 63.9
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 2.7e-70 269.2 215 63.3
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 3.5e-70 268.9 177 72.9
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 3.5e-70 268.9 180 71.7
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 4.6e-70 268.5 185 73.0
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 5.9e-70 268.1 187 69.0
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 7.8e-70 267.7 189 68.3
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 1.0e-69 267.3 187 67.4
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 1.3e-69 266.9 187 67.9
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.3e-69 266.9 218 63.8
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 3.9e-69 265.4 222 62.2
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 3.9e-69 265.4 187 67.9
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 5.0e-69 265.0 183 68.9
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 6.6e-69 264.6 211 70.6
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 6.6e-69 264.6 221 62.9
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 6.6e-69 264.6 227 62.6
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 8.6e-69 264.2 185 69.7
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 8.6e-69 264.2 220 64.5
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.1e-68 263.8 217 60.4
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 1.1e-68 263.8 223 61.0
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.1e-68 263.8 209 62.7
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.5e-68 263.5 229 61.1
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.5e-68 263.5 185 68.6
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 1.9e-68 263.1 185 71.4
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 2.5e-68 262.7 210 63.3
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 2.5e-68 262.7 217 62.2
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 2.5e-68 262.7 171 74.3
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 3.3e-68 262.3 183 69.4
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 5.6e-68 261.5 185 68.1
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 5.6e-68 261.5 206 63.1
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 7.3e-68 261.2 218 63.3
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.2e-67 260.4 185 67.6
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 3.6e-67 258.8 185 67.0
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 3.6e-67 258.8 225 59.1
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 3.6e-67 258.8 174 71.3
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 8.0e-67 257.7 186 66.7
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.4e-66 256.9 181 69.6
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 2.3e-66 256.1 221 60.2
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 5.2e-66 255.0 177 72.3
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 6.8e-66 254.6 186 66.7
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.5e-65 253.4 186 66.7
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 5.8e-65 251.5 215 60.5
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 9.8e-65 250.8 175 69.7
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 9.8e-65 250.8 217 60.8
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 2.9e-64 249.2 187 64.2
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 2.9e-64 249.2 177 66.1
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.4e-63 246.1 200 61.5
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 3.2e-63 245.7 183 63.4
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 5.4e-63 245.0 207 60.9
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 9.2e-63 244.2 204 58.8
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.0e-62 243.0 200 60.0
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.5e-62 242.3 221 58.8
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 3.5e-62 242.3 176 64.8
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 3.0e-61 239.2 193 63.2
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 3.0e-61 239.2 193 63.2
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 6.6e-61 238.0 203 59.6
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 8.6e-61 237.7 201 59.7
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 1.9e-60 236.5 204 59.3
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.9e-60 236.5 193 62.7
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.9e-60 236.5 193 62.7
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.9e-60 236.5 193 62.7
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 2.5e-60 236.1 198 60.6
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 3.3e-60 235.7 201 59.2
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 3.3e-60 235.7 199 59.8
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 5.6e-60 235.0 207 58.5
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 5.6e-60 235.0 205 58.5
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 5.6e-60 235.0 187 60.4
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 5.6e-60 235.0 180 63.3
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 1.4e-58 230.3 217 54.8
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.4e-57 225.7 190 61.6
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 7.5e-57 224.6 192 62.5
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.9e-56 222.6 190 61.1
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 3.7e-56 222.2 204 57.4
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 6.4e-56 221.5 189 58.7
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.1e-55 220.7 186 61.3
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.9e-55 219.9 151 70.9
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 7.1e-55 218.0 156 65.4
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.2e-54 217.2 207 57.0
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 2.1e-54 216.5 174 62.6
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 2.7e-54 216.1 198 55.6
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 3.5e-54 215.7 171 60.2
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.3e-53 213.0 174 58.6
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.0e-53 212.6 156 65.4
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.0e-53 212.6 156 65.4
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 3.0e-53 212.6 156 65.4
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.1e-53 211.8 197 55.8
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 2.5e-52 209.5 202 55.0
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 4.3e-52 208.8 154 64.9
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 8.1e-51 204.5 200 55.5
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.4e-50 203.8 154 63.0
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.8e-50 203.4 202 54.5
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 6.8e-50 201.4 155 60.0
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 3.4e-49 199.1 206 52.4
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 5.8e-49 198.4 155 59.4
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 5.8e-49 198.4 156 60.9
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 3.8e-48 195.7 155 59.4
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 6.4e-48 194.9 149 63.8
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 9.2e-47 191.0 145 61.4
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.6e-46 190.3 198 51.0
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 3.5e-46 189.1 136 66.9
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 6.0e-46 188.3 176 54.5
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.0e-45 186.0 170 54.7
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 1.9e-44 183.3 183 51.4
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 3.3e-44 182.6 182 51.1
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 7.3e-44 181.4 143 65.7
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.6e-43 180.3 125 70.4
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 2.1e-43 179.9 177 51.4
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.1e-43 179.9 117 75.2
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.5e-41 173.7 186 51.1
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.5e-41 173.7 186 51.1
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 6.0e-38 161.8 136 56.6
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 2.1e-35 153.3 157 49.0
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.8e-35 152.9 106 69.8
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 8.1e-35 151.4 106 68.9
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 2.4e-34 149.8 201 43.3
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 3.4e-33 146.0 200 42.5
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 5.8e-33 145.2 196 43.4
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 1.4e-31 140.6 108 64.8
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 3.8e-24 115.9 87 64.4
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 2.4e-23 113.2 187 39.0
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 1.5e-17 94.0 202 31.2
AUR62026036 Chenopodium quinoa HOM05D003650 ORTHO05D004213 4.1e-10 69.3 51 70.6
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 5.3e-10 68.9 49 65.3
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 5.3e-10 68.9 49 65.3
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.9e-08 63.2 44 61.4


User provided reference genes

Program Settings