Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020937 Chenopodium quinoa HOM05D000003 ORTHO05D011948 3.8e-210 734.6 364 100.0
AUR62014610 Chenopodium quinoa HOM05D000003 ORTHO05D011948 2.1e-83 313.5 303 53.8
AUR62017627 Chenopodium quinoa HOM05D000003 ORTHO05D011948 1.2e-75 287.7 401 43.4
AUR62005006 Chenopodium quinoa HOM05D000003 ORTHO05D011948 4.3e-73 279.3 275 52.7
AUR62031169 Chenopodium quinoa HOM05D000003 ORTHO05D011948 2.7e-67 260.0 208 62.5
AUR62033666 Chenopodium quinoa HOM05D000003 ORTHO05D011948 2.7e-43 180.3 152 57.9
EL10Ac7g16951 Beta vulgaris HOM05D000003 ORTHO05D000006 3.5e-38 163.3 139 54.0
AUR62020928 Chenopodium quinoa HOM05D000001 ORTHO05D011365 2.3e-37 160.6 147 56.5
AUR62010603 Chenopodium quinoa HOM05D000003 ORTHO05D011948 7.2e-36 155.6 187 50.8
AUR62026508 Chenopodium quinoa HOM05D000003 ORTHO05D011948 1.5e-33 147.9 111 64.0
EL10Ac8g19110 Beta vulgaris HOM05D000003 ORTHO05D000004 7.0e-31 139.0 126 49.2
AUR62024266 Chenopodium quinoa HOM05D000003 ORTHO05D000006 7.3e-28 129.0 226 38.5
AUR62034918 Chenopodium quinoa HOM05D000107 ORTHO05D000062 9.8e-25 118.6 80 70.0
AUR62018650 Chenopodium quinoa HOM05D000003 ORTHO05D011948 1.6e-22 111.3 195 31.3
AUR62035763 Chenopodium quinoa HOM05D000003 ORTHO05D000006 1.6e-22 111.3 78 70.5
AUR62036575 Chenopodium quinoa HOM05D000003 ORTHO05D011948 1.1e-20 105.1 65 73.8
AUR62042269 Chenopodium quinoa HOM05D000039 ORTHO05D000370 4.3e-20 103.2 212 30.7
AUR62021059 Chenopodium quinoa HOM05D000003 ORTHO05D020420 2.1e-19 100.9 66 72.7
Ah.03g146370 Amaranthus hybridus HOM05D000003 ORTHO05D000006 1.1e-15 88.6 117 35.0
AUR62027652 Chenopodium quinoa HOM05D000065 ORTHO05D000162 2.1e-14 84.3 135 36.3
AUR62034919 Chenopodium quinoa HOM05D000003 ORTHO05D011948 3.5e-14 83.6 122 41.0
Sopen11g025250 Solanum pennellii HOM05D005774 ORTHO05D006516 4.6e-14 83.2 124 31.5
COL.COLO4_10338 Corchorus olitorius HOM05D000003 ORTHO05D000006 7.8e-14 82.4 93 43.0
Hma1.2p1_1143F.1_g261190 Hydrangea macrophylla HOM05D000003 ORTHO05D011616 7.8e-14 82.4 94 39.4
PSO541G2151 Papaver somniferum HOM05D000003 ORTHO05D000004 5.1e-13 79.7 103 39.8
CANSAT01G1078 Cannabis sativa HOM05D000003 ORTHO05D000004 8.6e-13 79.0 167 32.3
PGR142G1125 Punica granatum HOM05D000003 ORTHO05D000006 4.3e-12 76.6 95 37.9
Solyc11g065520.1 Solanum lycopersicum HOM05D005774 ORTHO05D006516 4.3e-12 76.6 118 30.5
Ah.13g069330 Amaranthus hybridus HOM05D000003 ORTHO05D011948 5.6e-12 76.3 194 29.9
Duzib192G0668 Durio zibethinus HOM05D000003 ORTHO05D000006 5.6e-12 76.3 96 35.4
PSO782G4259 Papaver somniferum HOM05D000003 ORTHO05D000006 9.5e-12 75.5 114 34.2
QL02p088210 Quercus lobata HOM05D000003 ORTHO05D000004 9.5e-12 75.5 94 34.0
vmacro09610 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.2e-11 75.1 201 26.4
COL.COLO4_20496 Corchorus olitorius HOM05D012200 ORTHO05D011948 1.6e-11 74.7 98 36.7
PSO017G3046 Papaver somniferum HOM05D053590 ORTHO05D000006 2.1e-11 74.3 103 36.9
COL.COLO4_12291 Corchorus olitorius HOM05D000003 ORTHO05D000007 2.8e-11 73.9 192 26.6
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 6.2e-11 72.8 102 32.4
Duzib187G0609 Durio zibethinus HOM05D000003 ORTHO05D000004 8.1e-11 72.4 96 34.4
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 8.1e-11 72.4 130 30.0
COL.COLO4_37466 Corchorus olitorius HOM05D012200 ORTHO05D011948 1.4e-10 71.6 122 31.1
COL.COLO4_25350 Corchorus olitorius HOM05D012200 ORTHO05D044732 1.8e-10 71.2 86 38.4
PSO386G0019 Papaver somniferum HOM05D000003 ORTHO05D000006 1.8e-10 71.2 106 34.0
COL.COLO4_35111 Corchorus olitorius HOM05D012200 ORTHO05D011948 2.3e-10 70.9 96 32.3
QL01p027762 Quercus lobata HOM05D000003 ORTHO05D000006 3.1e-10 70.5 93 31.2
QL01p027824 Quercus lobata HOM05D000003 ORTHO05D000006 3.1e-10 70.5 93 31.2
Lj2g0011350 Lotus japonicus HOM05D000003 ORTHO05D000004 4.0e-10 70.1 207 27.5
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 4.0e-10 70.1 90 34.4
COL.COLO4_13796 Corchorus olitorius HOM05D000003 ORTHO05D000007 5.2e-10 69.7 94 34.0
Aqoxy3G02165 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.8e-10 69.3 94 33.0
EL10Ac3g06059 Beta vulgaris HOM05D000003 ORTHO05D000006 6.8e-10 69.3 54 55.6
Peaxi162Scf00331g01118 Petunia axillaris HOM05D005774 ORTHO05D006516 6.8e-10 69.3 166 28.9
QL04p091860 Quercus lobata HOM05D000003 ORTHO05D044761 8.9e-10 68.9 87 33.3
AUR62007795 Chenopodium quinoa HOM05D000003 ORTHO05D011948 1.2e-09 68.6 104 40.4
QL93p1865_0150 Quercus lobata HOM05D000003 ORTHO05D000007 1.2e-09 68.6 83 36.1
vmacro16232 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.2e-09 68.6 87 37.9
EL10Ac9g22892 Beta vulgaris HOM05D000003 ORTHO05D016000 1.5e-09 68.2 143 25.9
AUR62021622 Chenopodium quinoa HOM05D000030 ORTHO05D000009 2.0e-09 67.8 113 31.9
PGSC0003DMG400045189 Solanum tuberosum HOM05D000003 ORTHO05D000006 2.0e-09 67.8 112 32.1
PSO017G2214 Papaver somniferum HOM05D000003 ORTHO05D000004 2.6e-09 67.4 102 26.5
CSS0016144 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.4e-09 66.6 85 38.8
PSO170G5799 Papaver somniferum HOM05D000003 ORTHO05D018077 4.4e-09 66.6 94 31.9
PSO339G1644 Papaver somniferum HOM05D053590 ORTHO05D011948 5.8e-09 66.2 104 39.4
PSO541G2721 Papaver somniferum HOM05D000003 ORTHO05D000006 7.6e-09 65.9 90 36.7
PSO675G7799 Papaver somniferum HOM05D000003 ORTHO05D000006 7.6e-09 65.9 77 31.2
Peaxi162Scf00554g00098 Petunia axillaris HOM05D005774 ORTHO05D006516 9.9e-09 65.5 117 35.0
Aqoxy1G03403 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.3e-08 65.1 106 34.9
AUR62006499 Chenopodium quinoa HOM05D000911 ORTHO05D000890 1.3e-08 65.1 81 40.7
PSO782G5482 Papaver somniferum HOM05D000003 ORTHO05D000006 1.3e-08 65.1 90 32.2
Rhsim05G0162800 Rhododendron simsii HOM05D001637 ORTHO05D000006 1.3e-08 65.1 94 40.4
Thecc.03G303500 Theobroma cacao HOM05D008014 ORTHO05D009981 1.3e-08 65.1 221 23.5
CSS0047834 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.7e-08 64.7 85 37.6
PSO210G5611 Papaver somniferum HOM05D000003 ORTHO05D000006 2.2e-08 64.3 93 33.3
Atru.chr1.2428 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-08 63.9 107 31.8
FvH4_5g34261 Fragaria vesca HOM05D000003 ORTHO05D000006 2.9e-08 63.9 59 49.2
Aqoxy1G03091 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 4.9e-08 63.2 97 29.9
CANSAT35G1482 Cannabis sativa HOM05D000003 ORTHO05D000006 4.9e-08 63.2 94 38.3
Aqoxy2G01837 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 6.4e-08 62.8 85 32.9
EL10Ac6g14935 Beta vulgaris HOM05D002420 ORTHO05D002422 6.4e-08 62.8 58 51.7
CAN.G338.11 Capsicum annuum HOM05D012247 ORTHO05D006516 6.4e-08 62.8 97 29.9
PSO170G3662 Papaver somniferum HOM05D000003 ORTHO05D000006 6.4e-08 62.8 68 41.2
Rhsim01G0175200 Rhododendron simsii HOM05D000003 ORTHO05D000006 6.4e-08 62.8 96 36.5
TWI56G0972 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 6.4e-08 62.8 91 35.2
PSO063G3784 Papaver somniferum HOM05D000003 ORTHO05D000006 8.4e-08 62.4 102 27.5
PSO675G6789 Papaver somniferum HOM05D000003 ORTHO05D000006 8.4e-08 62.4 93 34.4
CANSAT56G2946 Cannabis sativa HOM05D000003 ORTHO05D000006 1.1e-07 62.0 93 33.3
Dinv43396 Davidia involucrata HOM05D017375 ORTHO05D006516 1.1e-07 62.0 93 35.5
FvH4_2g12222 Fragaria vesca HOM05D000003 ORTHO05D000006 1.1e-07 62.0 98 31.6
RcHm_v2.0_Chr1g0342451 Rosa chinensis HOM05D000003 ORTHO05D000006 1.1e-07 62.0 94 34.0
Atru.chr10.1301 Acer truncatum HOM05D000003 ORTHO05D000006 1.4e-07 61.6 91 33.0
Aqoxy6G00553 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.4e-07 61.6 95 32.6
COL.COLO4_16891 Corchorus olitorius HOM05D012200 ORTHO05D011948 1.4e-07 61.6 173 27.7
SEGI_00672 Sequoiadendron giganteum HOM05D000003 ORTHO05D011210 1.4e-07 61.6 168 27.4
SEGI_30676 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 1.4e-07 61.6 185 29.2
PSO675G2570 Papaver somniferum HOM05D000003 ORTHO05D000006 1.9e-07 61.2 75 32.0
QL04p048382 Quercus lobata HOM05D000003 ORTHO05D011840 1.9e-07 61.2 138 32.6
EL10Ac4g08982 Beta vulgaris HOM05D000003 ORTHO05D000004 2.4e-07 60.8 50 50.0
COL.COLO4_32163 Corchorus olitorius HOM05D012200 ORTHO05D011948 2.4e-07 60.8 93 30.1
PSO170G3085 Papaver somniferum HOM05D000003 ORTHO05D000004 2.4e-07 60.8 94 30.9
QL04p038160 Quercus lobata HOM05D000003 ORTHO05D000007 2.4e-07 60.8 95 29.5
Rhsim10G0112100 Rhododendron simsii HOM05D000003 ORTHO05D000006 2.4e-07 60.8 94 38.3
Rhsim11G0134900 Rhododendron simsii HOM05D003042 ORTHO05D003670 2.4e-07 60.8 73 35.6
EL10Ac1g00406 Beta vulgaris HOM05D000003 ORTHO05D000007 3.2e-07 60.5 82 42.7
FvH4_1g24181 Fragaria vesca HOM05D000003 ORTHO05D000004 3.2e-07 60.5 173 26.6
Peaxi162Scf00096g01714 Petunia axillaris HOM05D005774 ORTHO05D006516 3.2e-07 60.5 98 30.6
QL01p018515 Quercus lobata HOM05D000003 ORTHO05D011616 3.2e-07 60.5 78 35.9
CANSAT78G1176 Cannabis sativa HOM05D000003 ORTHO05D000004 4.1e-07 60.1 85 34.1
CSS0020179 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.4e-07 59.7 80 38.8
PSO384G3807 Papaver somniferum HOM05D000003 ORTHO05D000004 5.4e-07 59.7 54 51.9
PSO541G2751 Papaver somniferum HOM05D000003 ORTHO05D000006 5.4e-07 59.7 75 33.3
PSO731G0094 Papaver somniferum HOM05D000003 ORTHO05D000004 5.4e-07 59.7 55 47.3
QL10p006121 Quercus lobata HOM05D008014 ORTHO05D011616 5.4e-07 59.7 95 28.4
Rhsim02G0238600 Rhododendron simsii HOM05D000003 ORTHO05D000006 5.4e-07 59.7 96 34.4
Atru.chr4.30 Acer truncatum HOM05D000003 ORTHO05D000004 7.1e-07 59.3 90 32.2
CANSAT21G0975 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-07 59.3 77 33.8
PSO017G2373 Papaver somniferum HOM05D000003 ORTHO05D000006 7.1e-07 59.3 94 29.8
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 7.1e-07 59.3 94 36.2
TWI38G1591 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 7.1e-07 59.3 94 28.7
Atru.chr3.3329 Acer truncatum HOM05D000003 ORTHO05D002259 9.2e-07 58.9 177 24.3
Atru.chr9.494 Acer truncatum HOM05D000003 ORTHO05D000006 9.2e-07 58.9 97 32.0
Aa31LG6G15220 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.2e-07 58.9 97 30.9
CANSAT35G0293 Cannabis sativa HOM05D000003 ORTHO05D000004 9.2e-07 58.9 83 36.1
TWI80G0001 Tripterygium wilfordii HOM05D000003 ORTHO05D000006 9.2e-07 58.9 107 31.8
BcaC05g27684 Brassica carinata HOM05D000003 ORTHO05D000006 1.2e-06 58.5 72 31.9
CSS0039165 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.2e-06 58.5 85 34.1
CANSAT11G0918 Cannabis sativa HOM05D000003 ORTHO05D000006 1.2e-06 58.5 76 35.5
CANSAT21G0357 Cannabis sativa HOM05D000003 ORTHO05D000006 1.2e-06 58.5 76 34.2
Nn8g40801 Nelumbo nucifera HOM05D063320 ORTHO05D016000 1.2e-06 58.5 48 52.1
Atru.chr1.1302 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 58.2 91 30.8
Atru.chr1.956 Acer truncatum HOM05D000003 ORTHO05D000006 1.6e-06 58.2 91 30.8
Atru.chr3.1587 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 58.2 97 33.0
Aa31sc427G30 Aethionema arabicum HOM05D000003 ORTHO05D000006 1.6e-06 58.2 73 30.1
Aqoxy5G02461 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.6e-06 58.2 77 32.5
CANSAT01G1029 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-06 58.2 73 39.7
TAR295G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000006 1.6e-06 58.2 57 43.9
Aqoxy5G03121 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 2.1e-06 57.8 70 37.1
AUR62018806 Chenopodium quinoa HOM05D000003 ORTHO05D000006 2.1e-06 57.8 113 28.3
COL.COLO4_20914 Corchorus olitorius HOM05D000003 ORTHO05D156144 2.1e-06 57.8 74 29.7
QL09p014965 Quercus lobata HOM05D000003 ORTHO05D000007 2.1e-06 57.8 148 24.3
BolC7t42134H Brassica oleracea HOM05D000003 ORTHO05D000004 2.7e-06 57.4 50 58.0
CANSAT01G3039 Cannabis sativa HOM05D000003 ORTHO05D000006 2.7e-06 57.4 111 27.9
PSO782G4220 Papaver somniferum HOM05D000003 ORTHO05D000004 2.7e-06 57.4 95 29.5
QL10p050539 Quercus lobata HOM05D000003 ORTHO05D000006 2.7e-06 57.4 88 25.0
RcHm_v2.0_Chr1g0342601 Rosa chinensis HOM05D000003 ORTHO05D000006 2.7e-06 57.4 92 29.3
Atru.chr2.1277 Acer truncatum HOM05D000003 ORTHO05D000006 3.5e-06 57.0 92 29.3
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 3.5e-06 57.0 91 30.8
Aa31sc128G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.5e-06 57.0 107 29.0
Aqoxy4G00679 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.5e-06 57.0 105 28.6
CANSAT21G0988 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 57.0 83 33.7
CANSAT54G2709 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-06 57.0 101 26.7
CANSAT78G0079 Cannabis sativa HOM05D000003 ORTHO05D000006 3.5e-06 57.0 99 33.3
PSO063G3094 Papaver somniferum HOM05D000003 ORTHO05D000004 3.5e-06 57.0 54 50.0
PSO675G5748 Papaver somniferum HOM05D000003 ORTHO05D000004 3.5e-06 57.0 78 41.0
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 3.5e-06 57.0 63 42.9
SEGI_30948 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 3.5e-06 57.0 78 32.1
SGA_v2.0_scaffold245G44786 Striga asiatica HOM05D008014 ORTHO05D016193 3.5e-06 57.0 77 31.2
Atru.chr10.629 Acer truncatum HOM05D000003 ORTHO05D000004 4.6e-06 56.6 91 31.9
Aqoxy4G01745 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 4.6e-06 56.6 56 42.9
Aqoxy6G02581 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.6e-06 56.6 56 48.2
CANSAT78G0187 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-06 56.6 83 34.9
AUR62020011 Chenopodium quinoa HOM05D000003 ORTHO05D000006 4.6e-06 56.6 87 28.7
COL.COLO4_06427 Corchorus olitorius HOM05D000003 ORTHO05D000006 4.6e-06 56.6 87 27.6
QL05p048212 Quercus lobata HOM05D008014 ORTHO05D011616 4.6e-06 56.6 73 28.8
Rhsim09G0065000 Rhododendron simsii HOM05D000003 ORTHO05D000006 4.6e-06 56.6 93 35.5
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-06 56.2 88 28.4
Atru.chr8.827 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-06 56.2 59 44.1
Atru.chr9.1348 Acer truncatum HOM05D000003 ORTHO05D000006 6.0e-06 56.2 91 31.9
CSS0042649 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 6.0e-06 56.2 68 35.3
CANSAT11G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 6.0e-06 56.2 104 29.8
CANSAT21G2014 Cannabis sativa HOM05D000003 ORTHO05D000006 6.0e-06 56.2 76 31.6
CANSAT56G0694 Cannabis sativa HOM05D000003 ORTHO05D000006 6.0e-06 56.2 76 35.5
CAN.G505.26 Capsicum annuum HOM05D000012 ORTHO05D000804 6.0e-06 56.2 162 24.1
Atru.chr6.1886 Acer truncatum HOM05D000003 ORTHO05D000006 7.8e-06 55.8 93 36.6
Aa31sc808G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.8e-06 55.8 113 29.2
Aqoxy1G02664 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 7.8e-06 55.8 74 33.8
EL10Ac4g09496 Beta vulgaris HOM05D001363 ORTHO05D006255 7.8e-06 55.8 102 29.4
CSS0018071 Camellia sinensis var. sinensis HOM05D013965 ORTHO05D000006 7.8e-06 55.8 80 37.5
CSS0046951 Camellia sinensis var. sinensis HOM05D000284 ORTHO05D000805 7.8e-06 55.8 63 38.1
CANSAT56G0584 Cannabis sativa HOM05D000003 ORTHO05D000006 7.8e-06 55.8 89 32.6
CANSAT56G4406 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-06 55.8 76 38.2
CANSAT64G1387 Cannabis sativa HOM05D000003 ORTHO05D000006 7.8e-06 55.8 76 34.2
CiPaw.06G011600 Carya illinoinensis HOM05D000003 ORTHO05D000006 7.8e-06 55.8 92 34.8
AUR62033634 Chenopodium quinoa HOM05D000439 ORTHO05D006172 7.8e-06 55.8 70 40.0
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 7.8e-06 55.8 53 39.6
PSO832G4459 Papaver somniferum HOM05D000003 ORTHO05D000006 7.8e-06 55.8 84 33.3
Sed0009564 Sechium edule HOM05D000003 ORTHO05D000006 7.8e-06 55.8 88 35.2
TAR034G0005 Trochodendron aralioides HOM05D000003 ORTHO05D000004 7.8e-06 55.8 59 42.4


User provided reference genes

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