Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 0.0e+00 1892.1 1042 100.0
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 0.0e+00 1651.3 1050 87.9
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 2.2e-242 843.2 1074 49.9
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.9e-198 697.2 1108 43.9
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.5e-137 494.2 1126 35.8
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.8e-88 331.3 1096 31.4
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 7.5e-70 270.0 1136 28.5
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.1e-63 249.6 1131 26.6
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.4e-63 248.4 1095 27.2
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.9e-60 238.8 1135 27.0
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.2e-59 236.1 1213 26.9
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.7e-59 235.0 1161 26.3
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 6.0e-59 233.8 1130 26.5
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.9e-57 228.8 1154 26.5
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 7.3e-57 226.9 1218 25.9
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 3.6e-56 224.6 1107 27.0
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 8.1e-56 223.4 1082 28.0
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.8e-55 222.2 1159 25.6
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 6.9e-55 220.3 1219 25.4
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 6.9e-55 220.3 1100 26.9
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 1.5e-54 219.2 987 29.5
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 1.5e-54 219.2 1150 26.3
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 3.4e-54 218.0 1165 26.4
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 3.4e-54 218.0 1235 26.8
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.9e-52 212.2 1120 28.8
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 3.5e-51 208.0 1160 25.8
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 4.6e-51 207.6 1237 25.5
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 6.0e-51 207.2 1119 26.5
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 6.0e-51 207.2 1173 25.7
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.0e-50 206.5 1114 26.8
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.7e-50 203.4 1234 25.0
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 3.3e-49 201.4 1159 25.9
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.1e-47 196.4 1109 26.0
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.8e-47 195.7 1090 26.4
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.5e-46 192.6 1086 25.9
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.6e-46 191.8 1074 26.8
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.8e-46 190.7 1143 26.6
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 7.6e-46 190.3 1120 25.9
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.2e-45 188.7 1140 26.3
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 4.6e-43 181.0 331 39.6
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 7.9e-43 180.3 1104 24.6
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 7.9e-43 180.3 1097 29.4
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 1.0e-42 179.9 1055 26.2
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.3e-42 178.7 1081 25.6
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.1e-41 176.4 1140 27.1
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 7.4e-41 173.7 1133 24.8
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.6e-41 173.3 1068 24.3
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.6e-40 172.6 1288 24.3
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 2.1e-40 172.2 1126 24.6
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 2.8e-40 171.8 1090 25.1
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 4.8e-40 171.0 1082 25.4
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 6.2e-40 170.6 396 34.6
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 1.8e-39 169.1 1060 25.1
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 9.0e-39 166.8 387 35.9
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.0e-38 165.6 1333 23.9
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 5.8e-38 164.1 1145 24.7
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.5e-36 157.5 1091 24.9
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.0e-34 153.3 1198 24.0
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.0e-34 153.3 1060 23.4
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 2.3e-34 152.1 276 42.0
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 5.1e-34 151.0 1132 23.0
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.7e-34 150.6 282 38.7
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.5e-33 149.4 1072 23.5
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 9.6e-33 146.7 1152 23.4
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.6e-32 146.0 1103 24.1
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 8.2e-32 143.7 1126 23.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.8e-31 142.5 1068 23.0
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 5.3e-31 141.0 307 36.2
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.0e-31 140.2 247 36.8
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.0e-31 140.2 1075 23.7
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.2e-30 139.8 254 37.0
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.5e-30 139.4 1139 24.1
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 2.6e-30 138.7 1151 23.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 3.4e-30 138.3 1105 25.1
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 1.3e-29 136.3 469 29.6
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-29 136.0 238 38.7
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.7e-29 136.0 1139 24.0
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.9e-29 134.4 246 35.8
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 8.4e-29 133.7 250 38.4
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.4e-29 133.7 235 38.7
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-28 132.9 225 38.2
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.8e-26 125.9 226 38.1
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 2.3e-26 125.6 289 35.6
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.3e-26 125.6 351 33.3
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 8.7e-26 123.6 153 47.7
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.6e-24 119.4 253 37.2
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 4.1e-23 114.8 939 23.4
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 4.1e-23 114.8 332 32.8
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 6.9e-23 114.0 369 29.8
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 2.6e-22 112.1 119 47.9
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.0e-21 110.2 117 48.7
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 2.9e-21 108.6 154 42.9
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.9e-21 108.6 325 31.4
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.0e-21 107.8 194 41.2
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 6.5e-21 107.5 257 33.5
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.1e-20 106.7 154 42.9
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.4e-20 106.3 459 28.8
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 7.2e-20 104.0 127 46.5
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 9.4e-20 103.6 247 32.8
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 9.4e-20 103.6 346 28.0
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 9.4e-20 103.6 259 32.4
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 2.1e-19 102.4 1217 22.9
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.7e-19 102.1 409 26.4
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 6.1e-19 100.9 293 32.1
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 5.1e-18 97.8 104 49.0
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.1e-17 96.7 1083 22.4
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 2.0e-17 95.9 324 30.9
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 2.5e-17 95.5 1095 23.5
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.5e-17 95.5 315 29.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 5.7e-17 94.4 145 40.7
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 5.7e-17 94.4 130 45.4
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 9.7e-17 93.6 236 30.5
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.7e-16 92.8 129 43.4
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 3.7e-16 91.7 120 42.5
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 3.7e-16 91.7 228 31.1
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 8.2e-16 90.5 127 40.9
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 8.2e-16 90.5 80 55.0
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.1e-15 90.1 331 27.5
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.4e-15 89.7 264 31.4
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.4e-15 89.7 264 31.4
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 2.4e-15 89.0 228 30.3
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 4.1e-15 88.2 127 38.6
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 4.1e-15 88.2 154 37.0
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 5.3e-15 87.8 227 34.4
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 9.1e-15 87.0 1085 21.8
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 9.1e-15 87.0 458 26.2
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 9.1e-15 87.0 228 30.7
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 1.2e-14 86.7 193 33.7
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 2.0e-14 85.9 127 37.8
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 5.9e-14 84.3 204 31.9
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 9.4e-12 77.0 1076 21.8
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 1.2e-11 76.6 70 52.9
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 1.6e-11 76.3 96 42.7
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 3.6e-11 75.1 117 37.6
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 6.7e-10 70.9 132 36.4
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.5e-09 69.7 196 30.1
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 3.3e-09 68.6 270 27.8
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 5.7e-09 67.8 489 24.9
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 7.4e-09 67.4 62 41.9
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 1.3e-08 66.6 57 52.6
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 1.4e-07 63.2 89 40.4
Os09g0502100 Oryza sativa ssp. japonica HOM05D020277 ORTHO05D023046 3.1e-07 62.0 120 35.8
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 4.5e-06 58.2 69 37.7


User provided reference genes

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