Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.5e-192 674.9 355 100.0
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.8e-149 532.3 285 95.4
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 4.9e-130 468.4 350 72.6
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 2.4e-92 343.2 346 55.2
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 5.9e-83 312.0 351 52.1
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.8e-77 292.4 338 49.1
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 4.8e-77 292.4 349 49.6
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 8.3e-77 291.6 351 48.4
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.1e-76 289.7 356 50.3
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 5.9e-75 285.4 360 47.2
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.0e-74 284.6 360 47.2
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.3e-74 284.3 348 47.1
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 8.5e-74 281.6 349 47.0
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.5e-73 280.8 345 49.9
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.2e-73 279.3 348 46.6
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 7.2e-73 278.5 345 49.3
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.7e-72 276.6 351 47.0
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 2.3e-71 273.5 349 47.6
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 3.0e-71 273.1 349 47.0
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 8.8e-71 271.6 306 52.6
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-70 271.2 346 46.2
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 1.5e-70 270.8 349 45.8
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.5e-70 270.8 353 47.0
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 4.4e-70 269.2 348 48.0
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 5.7e-70 268.9 346 47.4
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 5.7e-70 268.9 351 46.4
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.5e-70 268.5 346 47.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.7e-69 267.3 353 46.7
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.2e-69 266.9 353 46.5
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 3.7e-69 266.2 350 46.0
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 6.3e-69 265.4 353 46.2
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.3e-69 265.0 346 47.7
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.1e-68 264.6 350 45.4
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.2e-67 261.2 347 46.4
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 1.6e-67 260.8 348 46.0
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.6e-67 260.8 348 45.1
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 1.6e-67 260.8 348 46.0
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 2.7e-67 260.0 356 45.5
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.5e-67 259.6 351 45.3
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 4.5e-67 259.2 347 45.2
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 5.9e-67 258.8 333 45.6
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 7.7e-67 258.5 348 47.4
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-66 257.7 346 46.8
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 6.6e-66 255.4 363 42.7
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 6.6e-66 255.4 309 47.2
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 8.6e-66 255.0 347 45.5
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 1.1e-65 254.6 349 44.4
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 1.5e-65 254.2 350 43.7
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 2.5e-65 253.4 305 49.2
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 7.2e-65 251.9 350 45.1
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 2.8e-64 250.0 347 44.4
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.6e-64 249.6 348 45.4
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 3.6e-64 249.6 322 46.0
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 4.7e-64 249.2 349 46.4
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.4e-63 247.7 351 44.2
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.0e-63 246.5 348 46.0
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 1.5e-62 244.2 348 42.2
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 5.7e-62 242.3 350 42.9
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 7.5e-62 241.9 346 43.9
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 7.5e-62 241.9 346 44.2
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.2e-61 240.4 333 42.9
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.7e-61 239.6 394 41.4
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 4.1e-60 236.1 344 39.2
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 7.0e-60 235.3 355 43.1
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.2e-59 234.6 308 44.5
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 3.5e-59 233.0 344 40.1
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 4.5e-59 232.6 358 42.5
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 7.8e-59 231.9 348 44.8
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.0e-58 231.5 345 41.2
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 3.9e-58 229.6 358 42.2
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.0e-58 229.2 348 44.5
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 8.6e-58 228.4 347 42.1
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 8.6e-58 228.4 347 42.4
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 8.6e-58 228.4 348 39.4
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 1.1e-57 228.0 344 39.5
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 3.3e-57 226.5 344 39.8
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 4.3e-57 226.1 344 39.2
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 4.3e-57 226.1 344 39.2
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.5e-57 224.9 351 41.6
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 1.2e-56 224.6 353 40.2
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.6e-56 224.2 353 40.8
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 2.1e-56 223.8 349 41.5
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.7e-56 222.6 351 41.3
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 4.7e-56 222.6 355 41.7
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 6.1e-56 222.2 328 41.5
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 6.1e-56 222.2 351 38.5
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 8.0e-56 221.9 354 39.0
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 8.0e-56 221.9 350 40.6
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.0e-55 221.5 345 39.4
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.0e-55 221.5 346 40.2
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.0e-55 221.5 345 39.4
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.0e-55 221.5 344 39.0
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.4e-55 221.1 346 39.9
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-55 221.1 346 39.9
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.4e-55 221.1 348 41.7
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.8e-55 220.7 349 41.5
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 2.3e-55 220.3 349 41.5
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 5.2e-55 219.2 344 38.4
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.2e-54 218.0 304 45.4
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 1.5e-54 217.6 344 39.0
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-54 217.6 345 39.1
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 1.5e-54 217.6 345 39.1
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.5e-54 217.6 344 38.4
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 2.0e-54 217.2 305 42.3
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 2.0e-54 217.2 344 40.4
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.4e-54 216.5 351 40.7
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 7.5e-54 215.3 344 39.0
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 9.8e-54 214.9 350 36.3
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.3e-53 214.5 348 43.4
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.2e-53 213.8 369 39.8
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 4.9e-53 212.6 344 39.0
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 4.9e-53 212.6 349 39.0
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.9e-52 210.7 353 41.1
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 4.1e-52 209.5 356 41.0
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 2.7e-51 206.8 316 39.9
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 3.5e-51 206.5 347 38.6
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 3.5e-51 206.5 305 43.0
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 6.0e-51 205.7 340 41.2
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.3e-50 204.5 308 42.9
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.1e-49 201.4 344 37.2
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 1.5e-49 201.1 345 38.0
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 9.5e-49 198.4 290 40.7
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 2.8e-48 196.8 344 36.9
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 4.7e-48 196.1 307 39.4
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.4e-47 194.5 327 40.1
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 3.1e-47 193.4 151 67.5
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.2e-47 192.6 263 44.5
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.4e-44 182.6 271 43.9
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.5e-41 174.5 354 36.4
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.6e-40 171.0 283 38.9
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.9e-37 160.2 358 34.4
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 2.7e-35 153.7 202 45.5
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 1.7e-34 151.0 309 34.0
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 2.1e-19 100.9 365 30.1
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 3.0e-18 97.1 109 52.3
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.3e-17 92.4 125 41.6
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 1.3e-16 91.7 112 50.0
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 2.8e-16 90.5 90 51.1
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 8.1e-16 89.0 332 28.6
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 5.3e-15 86.3 143 38.5
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.5e-14 83.2 133 39.1
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.9e-13 80.5 128 39.1
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 1.1e-12 78.6 361 25.2
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.2e-11 75.1 351 27.9
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.0e-10 70.5 341 26.4
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 8.7e-10 68.9 245 27.8
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 9.6e-09 65.5 116 39.7
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 1.6e-08 64.7 71 47.9
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 2.8e-08 63.9 71 47.9
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 6.2e-08 62.8 75 44.0
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 2.0e-06 57.8 61 45.9
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 3.4e-06 57.0 61 45.9


User provided reference genes

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