Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.3e-133 478.4 243 100.0
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 7.5e-130 467.2 243 97.5
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 5.4e-104 381.3 219 85.4
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 2.5e-101 372.5 243 78.6
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 1.6e-95 353.2 221 81.0
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.7e-89 333.2 244 71.7
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 3.8e-89 332.0 244 71.7
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 3.2e-88 328.9 244 70.9
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 3.2e-88 328.9 244 70.9
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 1.3e-86 323.6 243 68.3
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 2.3e-86 322.8 244 69.3
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 3.3e-85 318.9 244 66.4
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 4.3e-85 318.5 244 68.4
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 5.6e-85 318.2 244 67.2
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 8.1e-84 314.3 245 69.0
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 1.8e-83 313.2 243 68.3
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 3.1e-83 312.4 244 66.0
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 4.0e-83 312.0 245 69.0
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 4.0e-83 312.0 244 68.4
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 5.3e-83 311.6 245 66.9
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 6.9e-83 311.2 244 67.2
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 6.9e-83 311.2 245 67.8
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 2.0e-82 309.7 243 67.9
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.6e-82 309.3 224 69.6
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 2.6e-82 309.3 243 66.7
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 7.6e-82 307.8 244 67.6
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 7.6e-82 307.8 244 66.8
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.3e-81 307.0 244 65.2
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.3e-81 307.0 243 65.8
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.3e-81 307.0 247 65.2
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 1.7e-81 306.6 245 64.5
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 2.9e-81 305.8 245 66.9
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 2.9e-81 305.8 245 66.9
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 3.8e-81 305.4 245 65.3
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.8e-81 305.4 245 65.3
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 3.8e-81 305.4 245 65.3
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 8.4e-81 304.3 247 67.2
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 8.4e-81 304.3 243 67.1
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 8.4e-81 304.3 245 66.1
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 1.1e-80 303.9 245 66.5
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.4e-80 303.5 243 67.1
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 4.2e-80 302.0 243 68.3
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 7.1e-80 301.2 244 66.4
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 9.3e-80 300.8 254 63.8
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 9.3e-80 300.8 243 65.0
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.2e-79 300.4 198 74.7
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.2e-79 300.4 246 64.6
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 1.2e-79 300.4 242 64.9
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.6e-79 300.1 197 74.6
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 2.1e-79 299.7 243 65.4
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.1e-79 299.7 245 64.5
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 3.5e-79 298.9 245 63.7
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.5e-79 298.9 246 64.2
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.6e-79 298.5 193 75.1
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 6.0e-79 298.1 245 65.3
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 7.9e-79 297.7 251 62.9
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.9e-79 297.7 248 64.1
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 7.9e-79 297.7 189 77.2
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 3.0e-78 295.8 199 73.4
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 3.9e-78 295.4 199 72.4
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 6.7e-78 294.7 243 64.2
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 6.7e-78 294.7 246 63.8
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 8.7e-78 294.3 193 73.6
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.5e-77 293.5 189 75.1
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.5e-77 293.5 199 73.4
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 2.5e-77 292.7 184 77.7
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 2.5e-77 292.7 255 62.4
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 3.3e-77 292.4 245 63.7
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 4.3e-77 292.0 255 62.7
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 4.3e-77 292.0 200 72.5
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 5.6e-77 291.6 255 62.0
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 9.6e-77 290.8 228 64.9
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 1.6e-76 290.0 246 64.6
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 2.1e-76 289.7 246 63.8
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 3.7e-76 288.9 247 63.2
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 1.4e-75 287.0 197 71.1
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 2.4e-75 286.2 233 64.4
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 4.0e-75 285.4 196 71.4
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 5.3e-75 285.0 243 64.2
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 6.9e-75 284.6 250 61.2
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 1.5e-74 283.5 244 62.3
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 1.3e-73 280.4 246 61.8
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 2.2e-73 279.6 247 60.7
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 2.9e-73 279.3 255 60.8
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 2.9e-73 279.3 239 64.0
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 3.8e-73 278.9 254 61.0
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 8.4e-73 277.7 254 60.2
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 1.1e-72 277.3 247 59.9
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 9.3e-72 274.2 243 60.1
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.6e-71 273.5 247 61.1
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.6e-71 273.5 247 61.1
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 2.1e-71 273.1 247 60.7
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 3.5e-71 272.3 251 61.0
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 3.5e-71 272.3 221 63.3
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 3.5e-71 272.3 231 61.5
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 1.0e-70 270.8 254 60.2
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 1.0e-70 270.8 249 61.4
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 1.8e-70 270.0 251 59.4
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 1.8e-70 270.0 255 58.8
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 2.3e-70 269.6 175 74.9
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.0e-70 269.2 246 59.3
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 3.9e-70 268.9 255 60.4
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 7.4e-69 264.6 232 58.6
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 9.7e-69 264.2 243 59.7
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 3.7e-68 262.3 192 68.8
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 6.3e-68 261.5 205 63.4
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 1.1e-67 260.8 167 76.6
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 5.3e-67 258.5 218 63.3
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.2e-66 257.3 188 64.9
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 5.9e-66 255.0 253 56.5
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.1e-64 250.8 249 54.6
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.2e-63 247.3 242 55.4
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 6.7e-62 241.5 218 56.9
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 2.5e-61 239.6 204 62.3
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 7.4e-61 238.0 235 53.6
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 1.2e-55 220.7 120 86.7
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 6.5e-49 198.4 121 77.7
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 6.1e-47 191.8 121 76.0
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 4.4e-45 185.7 186 54.8
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.3e-44 184.1 187 52.4
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.3e-44 184.1 165 58.8
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 1.8e-43 180.3 111 73.0
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.0e-42 176.8 197 43.1
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 2.9e-41 172.9 162 51.2
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 1.5e-40 170.6 204 45.1
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 3.7e-36 156.0 154 47.4
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 6.3e-36 155.2 173 48.6
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 1.7e-25 120.6 176 35.8
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 1.6e-23 114.0 68 77.9
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 3.9e-17 92.8 117 48.7
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 2.1e-15 87.0 152 28.3
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 2.6e-13 80.1 123 40.7
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 1.7e-12 77.4 137 33.6
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 8.6e-09 65.1 103 41.7
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 2.3e-06 57.0 67 55.2


User provided reference genes

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