Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020760 Chenopodium quinoa HOM05D006791 ORTHO05D008221 7.9e-126 453.8 223 100.0
AUR62027952 Chenopodium quinoa HOM05D006791 ORTHO05D008221 1.3e-83 313.5 181 86.2
EL10Ac2g03590 Beta vulgaris HOM05D006791 ORTHO05D008221 2.3e-69 266.2 199 69.3
GSVIVG01016310001 Vitis vinifera HOM05D006791 ORTHO05D008221 1.4e-66 256.9 213 61.0
arahy.Tifrunner.gnm1.ann1.86UM3X Arachis hypogaea HOM05D006791 ORTHO05D008221 1.2e-65 253.8 183 68.3
ClCG09G020610 Citrullus lanatus HOM05D006791 ORTHO05D008221 1.3e-64 250.4 179 66.5
CiPaw.01G274700 Carya illinoinensis HOM05D006791 ORTHO05D008221 5.0e-64 248.4 201 60.2
Sc20g0001960 Simmondsia chinensis HOM05D006791 ORTHO05D008221 5.0e-64 248.4 212 60.4
MBI14_g40667_MAGBIO Magnolia biondii HOM05D006791 ORTHO05D008221 6.6e-64 248.1 192 63.5
CsaV3_5G025780 Cucumis sativus L. HOM05D006791 ORTHO05D008221 8.6e-64 247.7 179 66.5
Medtr1g095580 Medicago truncatula HOM05D006791 ORTHO05D008221 2.5e-63 246.1 182 65.4
Glyma.20G178400 Glycine max HOM05D006791 ORTHO05D008221 3.3e-63 245.7 185 66.5
MELO3C002896.2 Cucumis melo HOM05D006791 ORTHO05D008221 9.5e-63 244.2 178 66.3
Lalb_Chr06g0162211 Lupinus albus HOM05D006791 ORTHO05D008221 9.5e-63 244.2 181 65.7
PGR142G3028 Punica granatum HOM05D006791 ORTHO05D008221 1.2e-62 243.8 184 64.7
PSO339G2849 Papaver somniferum HOM05D006791 ORTHO05D008221 1.6e-62 243.4 185 62.7
TPR.G1805 Trifolium pratense HOM05D006791 ORTHO05D008221 1.6e-62 243.4 183 65.6
Phvul.007G093000 Phaseolus vulgaris HOM05D006791 ORTHO05D008221 2.1e-62 243.0 181 66.9
Psat6g185200 Pisum sativum HOM05D006791 ORTHO05D008221 2.1e-62 243.0 183 65.0
CSS0037701 Camellia sinensis var. sinensis HOM05D006791 ORTHO05D008221 3.6e-62 242.3 181 65.2
SalBow3G2210 Salvia bowleyana HOM05D006791 ORTHO05D008221 3.6e-62 242.3 181 64.6
SGA_v2.0_scaffold341G49357 Striga asiatica HOM05D006791 ORTHO05D008221 3.6e-62 242.3 213 58.7
CSS0049359 Camellia sinensis var. sinensis HOM05D006791 ORTHO05D008221 6.2e-62 241.5 181 65.2
Sed0012525 Sechium edule HOM05D006791 ORTHO05D008221 6.2e-62 241.5 186 61.3
Actinidia03042 Actinidia chinensis HOM05D006791 ORTHO05D008221 8.0e-62 241.1 209 58.9
Cpa.g.sc466.9 Carica papaya HOM05D006791 ORTHO05D008221 1.0e-61 240.7 180 65.6
Lj5g0025337 Lotus japonicus HOM05D006791 ORTHO05D008221 1.4e-61 240.4 181 63.5
Sp5g10000 Schrenkiella parvula HOM05D006791 ORTHO05D008221 1.4e-61 240.4 180 66.1
Ca_10581_v3 Cicer arietinum L. HOM05D006791 ORTHO05D008221 1.8e-61 240.0 183 63.4
Dinv31358 Davidia involucrata HOM05D006791 ORTHO05D008221 1.8e-61 240.0 209 58.9
THA.LOC104802594 Tarenaya hassleriana HOM05D006791 ORTHO05D008221 2.3e-61 239.6 179 67.0
QL08p056563 Quercus lobata HOM05D006791 ORTHO05D008221 3.1e-61 239.2 185 64.3
Potri.008G042000 Populus trichocarpa HOM05D006791 ORTHO05D008221 4.0e-61 238.8 183 63.9
Oeu033855.1 Olea europaea HOM05D006791 ORTHO05D008221 5.2e-61 238.4 182 63.7
Haze_16919 Corylus avellana HOM05D006791 ORTHO05D008221 8.9e-61 237.7 175 65.7
PSO384G4004 Papaver somniferum HOM05D006791 ORTHO05D008221 8.9e-61 237.7 185 61.6
Carub.0005s1862 Capsella rubella HOM05D006791 ORTHO05D008221 1.2e-60 237.3 180 65.6
Nitab4.5_0000233g0130 Nicotiana tabacum HOM05D006791 ORTHO05D008221 1.2e-60 237.3 182 63.2
Nn2g10715 Nelumbo nucifera HOM05D006791 ORTHO05D008221 2.0e-60 236.5 216 56.5
FAN03G2469 Fragaria x ananassa HOM05D006791 ORTHO05D008221 2.6e-60 236.1 180 66.1
Manes.07G103500 Manihot esculenta HOM05D006791 ORTHO05D008221 2.6e-60 236.1 212 57.1
BraA03t13977Z Brassica rapa HOM05D006791 ORTHO05D008221 3.4e-60 235.7 199 57.8
RcHm_v2.0_Chr1g0363851 Rosa chinensis HOM05D006791 ORTHO05D008221 3.4e-60 235.7 180 65.6
Thecc.10G070300 Theobroma cacao HOM05D006791 ORTHO05D008221 3.4e-60 235.7 188 63.3
VMungo0720G1069 Vigna mungo HOM05D006791 ORTHO05D008221 4.4e-60 235.3 215 57.7
FvH4_7g19860 Fragaria vesca HOM05D006791 ORTHO05D008221 5.8e-60 235.0 180 65.6
FAN06G1214 Fragaria x ananassa HOM05D006791 ORTHO05D008221 5.8e-60 235.0 180 65.6
Sabra08G0028900 Salix brachista HOM05D006791 ORTHO05D008221 5.8e-60 235.0 183 62.3
BolC7t45202H Brassica oleracea HOM05D006791 ORTHO05D008221 7.5e-60 234.6 199 57.8
CAN.G131.1 Capsicum annuum HOM05D006791 ORTHO05D008221 7.5e-60 234.6 182 62.6
AL5G32850 Arabidopsis lyrata HOM05D006791 ORTHO05D008221 9.8e-60 234.2 181 64.1
Duzib106G0039 Durio zibethinus HOM05D006791 ORTHO05D008221 1.3e-59 233.8 183 63.9
TAR633G1431 Trochodendron aralioides HOM05D006791 ORTHO05D008221 1.3e-59 233.8 183 62.3
Migut.F01766 Erythranthe guttata HOM05D006791 ORTHO05D008221 1.7e-59 233.4 181 65.2
Thhalv10010446m.g Eutrema salsugineum HOM05D006791 ORTHO05D008221 1.7e-59 233.4 182 65.4
Ah.10g032870 Amaranthus hybridus HOM05D006791 ORTHO05D008221 2.9e-59 232.6 157 69.4
CANSAT56G4374 Cannabis sativa HOM05D006791 ORTHO05D008221 3.7e-59 232.3 182 63.7
Gorai.010G204900 Gossypium raimondii HOM05D006791 ORTHO05D008221 3.7e-59 232.3 179 65.9
AT3G52260 Arabidopsis thaliana HOM05D006791 ORTHO05D008221 4.9e-59 231.9 181 63.5
Gohir.D06G176900 Gossypium hirsutum HOM05D006791 ORTHO05D008221 4.9e-59 231.9 179 65.4
MD07G1176900 Malus domestica HOM05D006791 ORTHO05D008221 4.9e-59 231.9 180 63.9
HanXRQChr08g0219631 Helianthus annuus HOM05D006791 ORTHO05D008221 1.1e-58 230.7 209 56.9
Gohir.A06G178100 Gossypium hirsutum HOM05D006791 ORTHO05D008221 1.4e-58 230.3 180 65.0
DCAR_019128 Daucus carota HOM05D006791 ORTHO05D008221 1.9e-58 229.9 187 62.0
Solyc02g062520.3 Solanum lycopersicum HOM05D006791 ORTHO05D008221 2.4e-58 229.6 182 60.4
A03p48770 Brassica napus HOM05D006791 ORTHO05D008221 3.2e-58 229.2 217 54.4
ECA233G0118 Erigeron canadensis HOM05D000058 ORTHO05D008221 3.2e-58 229.2 185 62.2
Aa31LG10G7360 Aethionema arabicum HOM05D006791 ORTHO05D008221 2.0e-57 226.5 198 58.6
MSTRG.371 Avicennia marina HOM05D006791 ORTHO05D008221 2.0e-57 226.5 179 60.9
Aqoxy7G02243 Aquilegia oxysepala HOM05D006791 ORTHO05D008221 3.5e-57 225.7 181 60.2
Nitab4.5_0004081g0030 Nicotiana tabacum HOM05D006791 ORTHO05D008221 4.6e-57 225.3 208 56.2
Sopen02g013520 Solanum pennellii HOM05D006791 ORTHO05D008221 6.0e-57 224.9 182 59.3
Cc02_g11450 Coffea canephora HOM05D006791 ORTHO05D008221 1.3e-56 223.8 217 53.5
Eucgr.G02814 Eucalyptus grandis HOM05D006791 ORTHO05D008221 5.0e-56 221.9 183 60.7
Lsat_1_v5_gn_8_20021 Lactuca sativa HOM05D006791 ORTHO05D008221 1.1e-55 220.7 185 63.2
CDE09G0276 Ceratophyllum demersum HOM05D006791 ORTHO05D008221 3.3e-55 219.2 186 57.5
C07p46860 Brassica napus HOM05D006791 ORTHO05D008221 8.1e-54 214.5 250 48.4
unitig_747.g21478 Utricularia gibba HOM05D006791 ORTHO05D008221 3.4e-52 209.1 192 57.3
arahy.Tifrunner.gnm1.ann1.7LH3TR Arachis hypogaea HOM05D002197 ORTHO05D008221 4.4e-52 208.8 132 77.3
Hund22514 Selenicereus undatus HOM05D006791 ORTHO05D008221 5.8e-52 208.4 147 66.0
Prupe.2G215700 Prunus persica HOM05D006791 ORTHO05D008221 1.3e-51 207.2 221 51.1
Zm00001eb013230 Zea mays HOM05D006791 ORTHO05D008221 1.3e-51 207.2 192 57.3
Lj8A97G46 Lonicera japonica HOM05D006791 ORTHO05D008221 2.2e-51 206.5 136 72.1
ATR0759G009 Amborella trichopoda HOM05D006791 ORTHO05D008221 3.7e-51 205.7 190 52.6
Peaxi162Scf00108g00912 Petunia axillaris HOM05D006791 ORTHO05D008221 1.0e-48 197.6 176 56.2
FAN01G2861 Fragaria x ananassa HOM05D002197 ORTHO05D008221 7.3e-47 191.4 170 57.6
TWI15G0354 Tripterygium wilfordii HOM05D006791 ORTHO05D008221 7.3e-47 191.4 152 61.2
Pp3c20_1270 Physcomitrium patens HOM05D006791 ORTHO05D008221 2.1e-46 189.9 194 52.1
Mapoly0002s0246 Marchantia polymorpha HOM05D006791 ORTHO05D008221 9.2e-42 174.5 188 47.3
AagrBONN_evm.TU.Sc2ySwM_344.689 Anthoceros agrestis HOM05D006791 ORTHO05D008221 2.1e-41 173.3 139 63.3
SMO347G0025 Selaginella moellendorffii HOM05D006791 ORTHO05D008221 3.5e-41 172.6 160 51.9
Atru.chr12.724 Acer truncatum HOM05D006791 ORTHO05D008221 4.6e-41 172.2 212 47.2
Ciclev10033672m.g Citrus clementina HOM05D006791 ORTHO05D008221 3.9e-40 169.1 142 62.7
RcHm_v2.0_Chr5g0046841 Rosa chinensis HOM05D006791 ORTHO05D008221 1.5e-39 167.2 134 61.9
Os03g0288500 Oryza sativa ssp. japonica HOM05D006791 ORTHO05D008221 1.2e-38 164.1 119 66.4
FAN10G1968 Fragaria x ananassa HOM05D006791 ORTHO05D008221 4.9e-35 152.1 140 57.1
SEGI_28811 Sequoiadendron giganteum HOM05D006791 ORTHO05D008221 5.4e-34 148.7 136 55.9
COL.COLO4_23714 Corchorus olitorius HOM05D006791 ORTHO05D008221 1.0e-32 144.4 179 49.7
HPP92_001044 Vanilla planifolia HOM05D006791 ORTHO05D008221 1.1e-29 134.4 103 65.0
RcHm_v2.0_Chr2g0110391 Rosa chinensis HOM05D006791 ORTHO05D008221 9.9e-28 127.9 134 52.2
CDE09G1017 Ceratophyllum demersum HOM05D006791 ORTHO05D008221 1.1e-26 124.4 93 61.3
CARHR162020 Cardamine hirsuta HOM05D006791 ORTHO05D008221 4.2e-26 122.5 103 61.2
Cre16.g689100 Chlamydomonas reinhardtii HOM05D006791 ORTHO05D008221 3.9e-24 115.9 231 32.0
RcHm_v2.0_Chr2g0104231 Rosa chinensis HOM05D006791 ORTHO05D008221 4.0e-21 105.9 80 68.8
FAN10G1147 Fragaria x ananassa HOM05D006791 ORTHO05D008221 3.8e-11 72.8 71 52.1
Zm00001eb333930 Zea mays HOM05D006791 ORTHO05D008221 6.5e-11 72.0 61 62.3
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 9.3e-10 68.2 139 28.1
Zm00001eb364040 Zea mays HOM05D006791 ORTHO05D008221 9.3e-10 68.2 61 60.7
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 8.7e-08 61.6 135 31.9
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 3.3e-07 59.7 128 28.9
C02p20570 Brassica napus HOM05D005705 ORTHO05D007152 4.3e-07 59.3 150 31.3
AagrBONN_evm.TU.Sc2ySwM_117.3893 Anthoceros agrestis HOM05D006791 ORTHO05D008221 1.6e-06 57.4 67 46.3
BcaC03g14622 Brassica carinata HOM05D005705 ORTHO05D007152 1.6e-06 57.4 149 30.2
Sp6g13350 Schrenkiella parvula HOM05D005705 ORTHO05D007152 8.2e-06 55.1 128 31.2


User provided reference genes

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