Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 3.8e-134 481.5 241 100.0
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 6.7e-131 470.7 244 97.5
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 6.6e-110 401.0 245 80.8
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 9.2e-96 354.0 202 83.7
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 1.5e-82 310.1 211 74.4
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 3.7e-81 305.4 166 86.1
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 4.3e-77 292.0 242 64.9
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 7.3e-77 291.2 231 63.2
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 1.2e-76 290.4 217 67.7
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.6e-76 290.0 226 64.6
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 4.7e-76 288.5 242 62.4
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 6.2e-76 288.1 238 64.3
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.4e-75 286.2 238 63.0
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 5.2e-75 285.0 236 61.4
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 8.9e-75 284.3 200 72.0
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 8.9e-75 284.3 200 72.0
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 2.6e-74 282.7 204 68.1
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 2.6e-74 282.7 204 66.2
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 4.4e-74 282.0 204 66.7
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 4.4e-74 282.0 223 63.7
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 9.9e-74 280.8 204 67.6
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 9.9e-74 280.8 203 69.0
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.7e-73 280.0 203 69.0
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 4.9e-73 278.5 237 59.1
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 8.4e-73 277.7 229 61.1
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 1.4e-72 276.9 200 69.5
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 2.4e-72 276.2 227 64.3
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 4.2e-72 275.4 214 66.4
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 7.1e-72 274.6 214 66.4
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 9.3e-72 274.2 207 64.3
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.7e-71 272.7 210 63.3
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 4.6e-71 271.9 200 68.0
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 4.6e-71 271.9 206 64.6
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 6.0e-71 271.6 237 58.2
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 1.0e-70 270.8 239 58.6
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 1.3e-70 270.4 225 59.6
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 1.3e-70 270.4 206 61.7
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 1.3e-70 270.4 203 64.5
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.7e-70 270.0 236 58.1
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.7e-70 270.0 236 58.1
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 1.7e-70 270.0 237 57.8
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 3.0e-70 269.2 240 57.1
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 3.9e-70 268.9 214 62.6
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 8.7e-70 267.7 213 65.3
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 1.1e-69 267.3 200 67.5
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 1.1e-69 267.3 198 64.1
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 3.3e-69 265.8 232 59.5
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 4.3e-69 265.4 199 62.8
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 5.6e-69 265.0 200 66.0
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 7.3e-69 264.6 228 56.6
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.3e-68 263.8 218 61.9
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 4.8e-68 261.9 196 62.8
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 4.8e-68 261.9 200 64.0
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 4.8e-68 261.9 201 64.2
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.8e-68 261.9 201 64.2
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 8.1e-68 261.2 201 64.2
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.1e-67 260.8 201 63.7
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.1e-67 260.8 201 63.7
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 1.4e-67 260.4 199 65.3
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 9.0e-67 257.7 218 57.3
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 1.2e-66 257.3 223 61.0
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 2.0e-66 256.5 239 54.8
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 3.4e-66 255.8 200 63.5
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 4.4e-66 255.4 212 59.0
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 4.4e-66 255.4 239 56.9
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 4.4e-66 255.4 239 56.9
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 5.8e-66 255.0 200 61.5
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 7.6e-66 254.6 212 58.5
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 7.6e-66 254.6 212 58.5
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 7.6e-66 254.6 212 58.5
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 9.9e-66 254.2 212 58.5
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 3.8e-65 252.3 212 57.5
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 3.8e-65 252.3 212 57.5
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 3.8e-65 252.3 200 64.5
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 6.4e-65 251.5 205 58.5
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 8.4e-65 251.1 207 57.5
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 1.4e-64 250.4 207 57.5
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.4e-64 250.4 237 56.5
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 1.9e-64 250.0 207 57.5
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 2.4e-64 249.6 212 57.1
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 2.4e-64 249.6 207 57.0
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 2.4e-64 249.6 212 57.1
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 2.4e-64 249.6 212 57.1
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 4.2e-64 248.8 212 57.1
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 4.2e-64 248.8 223 59.2
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 7.1e-64 248.1 201 62.7
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 9.3e-64 247.7 205 58.0
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 9.3e-64 247.7 203 58.1
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 4.6e-63 245.4 238 55.5
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 1.7e-62 243.4 203 59.6
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 2.3e-62 243.0 239 54.4
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 3.4e-58 229.2 172 68.0
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 1.3e-57 227.3 192 60.9
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 1.3e-52 210.7 199 56.3
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 1.3e-52 210.7 199 56.3
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 6.9e-51 204.9 170 58.8
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 8.4e-49 198.0 235 49.4
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 1.1e-48 197.6 224 50.0
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 4.2e-48 195.7 173 60.7
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 5.5e-48 195.3 173 60.7
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 3.9e-46 189.1 151 61.6
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 2.1e-44 183.3 217 45.2
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 1.4e-43 180.6 146 61.6
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 7.6e-42 174.9 150 60.0
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 6.5e-41 171.8 139 60.4
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 2.7e-39 166.4 133 65.4
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 4.3e-37 159.1 101 72.3
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 2.5e-32 143.3 114 62.3
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 2.1e-31 140.2 115 58.3
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 1.8e-30 137.1 100 67.0
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 2.6e-29 133.3 218 36.7
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 1.4e-24 117.5 89 64.0
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 2.5e-24 116.7 108 53.7
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 2.2e-17 93.6 118 46.6
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 2.2e-17 93.6 118 46.6
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 2.2e-17 93.6 118 46.6
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 2.2e-17 93.6 118 46.6
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 2.2e-17 93.6 118 46.6
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 9.4e-16 88.2 141 39.0
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 1.6e-15 87.4 71 56.3
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 3.3e-13 79.7 51 72.5
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 4.4e-13 79.3 51 72.5
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 4.4e-13 79.3 51 72.5
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 7.5e-13 78.6 52 71.2
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 9.7e-13 78.2 55 65.5
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 1.3e-12 77.8 51 70.6
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 8.5e-09 65.1 93 43.0
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.3e-06 57.0 48 56.2
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 3.0e-06 56.6 48 56.2
HanXRQChr05g0139891 Helianthus annuus HOM05D001733 ORTHO05D001882 3.0e-06 56.6 54 51.9
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 5.2e-06 55.8 48 52.1
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 8.8e-06 55.1 72 41.7


User provided reference genes

Program Settings