Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 8.4e-243 844.0 695 100.0
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 8.9e-184 647.9 462 89.8
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.6e-84 318.2 494 54.9
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 9.5e-69 265.8 211 71.1
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.3e-62 244.6 382 49.2
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.8e-51 208.4 237 54.9
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.8e-51 208.4 237 54.9
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 5.8e-50 203.4 208 57.7
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 3.8e-49 200.7 187 61.0
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.4e-48 198.0 203 57.6
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 2.1e-47 194.9 205 59.0
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 2.7e-47 194.5 209 56.0
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 4.6e-47 193.7 162 65.4
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.8e-47 193.0 219 55.7
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.7e-46 191.8 215 54.0
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 3.0e-46 191.0 189 57.7
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 3.9e-46 190.7 173 61.3
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 2.5e-45 188.0 215 55.3
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 4.3e-45 187.2 211 57.3
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.2e-44 185.7 208 53.8
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.6e-44 185.3 209 56.0
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.6e-44 185.3 208 56.2
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.1e-44 184.9 208 56.2
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.1e-44 184.9 147 67.3
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.8e-44 184.5 201 53.7
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.8e-44 184.5 207 57.0
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.8e-44 184.5 204 53.4
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 6.2e-44 183.3 208 55.3
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.2e-44 183.3 208 55.3
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 8.1e-44 183.0 211 54.0
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.1e-44 183.0 208 55.8
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.1e-43 182.6 211 54.5
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.8e-43 181.8 206 51.5
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.8e-43 181.8 206 51.5
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.1e-43 181.0 210 54.8
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 3.1e-43 181.0 212 50.5
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.1e-43 181.0 200 57.5
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 4.0e-43 180.6 204 51.0
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 4.0e-43 180.6 212 53.3
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.0e-43 180.6 212 53.8
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 5.2e-43 180.3 216 51.4
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 6.9e-43 179.9 218 52.3
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 6.9e-43 179.9 202 52.0
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 6.9e-43 179.9 202 55.0
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 8.9e-43 179.5 203 52.2
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 1.2e-42 179.1 204 55.4
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.5e-42 178.7 210 51.4
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 1.5e-42 178.7 206 55.3
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 2.0e-42 178.3 208 51.9
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.0e-42 178.3 169 58.0
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 2.0e-42 178.3 190 52.1
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 3.4e-42 177.6 205 54.1
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 4.4e-42 177.2 212 51.4
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 5.8e-42 176.8 179 59.8
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 7.6e-42 176.4 174 59.8
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 9.9e-42 176.0 201 54.2
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.3e-41 175.6 173 58.4
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.7e-41 175.3 213 51.6
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.7e-41 175.3 204 52.5
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.7e-41 175.3 206 50.0
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 2.2e-41 174.9 210 50.5
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.2e-41 174.9 218 51.4
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.8e-41 174.1 185 58.4
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 8.4e-41 172.9 211 49.3
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 3.2e-40 171.0 205 52.2
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 4.2e-40 170.6 206 52.4
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 5.4e-40 170.2 148 63.5
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 7.1e-40 169.9 334 47.0
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 7.1e-40 169.9 317 40.4
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.2e-39 169.1 150 64.7
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.2e-39 169.1 208 51.0
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.1e-39 168.3 330 40.0
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.7e-39 167.9 149 63.8
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.7e-39 167.9 149 63.1
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.5e-39 167.5 149 62.4
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 6.0e-39 166.8 206 50.0
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 1.0e-38 166.0 147 63.9
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.0e-38 166.0 222 50.0
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.3e-38 164.9 224 48.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 5.1e-38 163.7 194 53.6
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 5.1e-38 163.7 149 62.4
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 6.6e-38 163.3 185 54.6
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 2.5e-37 161.4 148 62.2
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 3.3e-37 161.0 210 49.0
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 5.6e-37 160.2 200 49.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.3e-37 159.8 121 71.1
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 2.8e-36 157.9 205 46.3
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.4e-35 155.6 195 49.2
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.4e-35 154.8 210 46.2
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.4e-35 154.8 149 60.4
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 2.4e-35 154.8 120 66.7
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.1e-35 154.5 149 59.7
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 6.9e-35 153.3 116 68.1
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 9.0e-35 152.9 134 59.7
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.2e-34 152.5 416 41.3
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.5e-34 152.1 149 55.7
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 2.0e-34 151.8 116 70.7
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 3.4e-34 151.0 167 52.7
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 9.9e-34 149.4 103 73.8
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.7e-33 148.7 399 33.8
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 2.9e-33 147.9 213 45.1
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.9e-33 147.9 376 36.4
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 2.9e-33 147.9 103 72.8
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 3.8e-33 147.5 103 72.8
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 6.4e-33 146.7 129 61.2
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.1e-32 146.0 142 64.1
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.9e-32 145.2 167 49.7
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 4.2e-32 144.1 173 49.1
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 9.3e-32 142.9 106 68.9
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 9.3e-32 142.9 121 62.0
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 6.0e-31 140.2 121 62.8
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.0e-30 139.4 170 49.4
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 1.1e-29 136.0 183 49.2
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.5e-29 135.6 215 44.2
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 5.6e-29 133.7 91 71.4
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.8e-28 131.3 146 54.8
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 2.6e-26 124.8 197 43.7
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 9.9e-26 122.9 153 49.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 9.9e-26 122.9 153 49.0
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.9e-25 121.3 129 57.4
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 3.8e-25 120.9 96 65.6
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 6.4e-25 120.2 90 68.9
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 3.2e-24 117.9 221 40.7
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 7.1e-24 116.7 110 52.7
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 2.7e-23 114.8 81 69.1
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.5e-23 114.4 122 54.1
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 6.0e-23 113.6 155 51.6
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.8e-22 112.1 164 49.4
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.5e-21 109.0 99 62.6
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.3e-21 107.8 102 54.9
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.1e-20 105.1 166 42.8
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 2.8e-20 104.8 123 52.8
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.7e-20 104.4 105 58.1
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.8e-20 104.0 149 44.3
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 6.2e-20 103.6 109 52.3
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 6.2e-20 103.6 112 50.9
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 8.2e-20 103.2 105 58.1
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 8.2e-20 103.2 170 44.1
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 2.4e-19 101.7 111 50.5
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 3.1e-19 101.3 107 52.3
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 9.0e-19 99.8 108 50.9
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.5e-18 99.0 104 51.9
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 2.6e-18 98.2 108 50.0
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.5e-18 97.4 147 46.3
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 7.6e-18 96.7 104 52.9
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 8.4e-17 93.2 104 52.9
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 1.1e-16 92.8 183 39.9
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.3e-16 89.7 99 53.5
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.2e-15 89.4 106 47.2
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 2.7e-15 88.2 116 51.7
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.3e-14 85.1 105 43.8
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.9e-13 82.0 114 47.4
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 2.1e-12 78.6 177 32.8
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.8e-12 78.2 100 43.0
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 6.3e-12 77.0 50 80.0
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 2.6e-10 71.6 118 44.1
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.6e-10 71.6 69 62.3
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.4e-10 71.2 138 39.1
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 5.9e-10 70.5 84 54.8
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.3e-09 69.3 53 60.4
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 5.0e-09 67.4 67 47.8
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.2e-08 64.3 68 51.5


User provided reference genes

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