Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1548.5 785 100.0
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1509.6 785 97.1
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1232.6 788 79.8
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 0.0e+00 1091.3 789 72.1
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 2.4e-262 909.1 784 59.8
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 2.0e-261 906.0 779 58.4
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 1.5e-259 899.8 789 60.3
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 8.9e-257 890.6 783 57.3
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 7.5e-256 887.5 784 58.3
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 2.9e-255 885.6 783 57.2
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 7.8e-253 877.5 782 58.3
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 9.5e-251 870.5 785 56.9
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 1.6e-250 869.8 785 57.5
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 2.1e-250 869.4 786 57.4
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 8.1e-250 867.5 784 56.8
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 3.1e-249 865.5 788 57.0
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 3.1e-249 865.5 784 57.0
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 6.8e-249 864.4 782 57.4
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 2.9e-247 859.0 786 56.1
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 4.1e-246 855.1 788 56.0
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 1.6e-245 853.2 783 55.9
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 6.0e-245 851.3 788 57.0
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 1.7e-244 849.7 785 56.1
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 3.9e-244 848.6 788 57.2
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 6.6e-244 847.8 783 56.1
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 6.6e-244 847.8 784 56.4
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 8.6e-244 847.4 783 56.4
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 1.1e-243 847.0 744 58.9
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 7.3e-243 844.3 784 57.7
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 9.5e-243 844.0 784 55.7
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 3.6e-242 842.0 783 56.2
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 1.4e-241 840.1 784 55.7
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 2.0e-240 836.3 784 55.5
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 9.9e-240 833.9 783 56.1
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 1.7e-239 833.2 784 56.0
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 3.8e-239 832.0 795 56.7
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 1.4e-238 830.1 784 54.7
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 1.0e-236 823.9 784 54.8
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 2.5e-235 819.3 784 54.5
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 5.6e-235 818.1 787 54.1
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 9.6e-235 817.4 784 54.1
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 1.1e-233 813.9 787 54.0
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 5.2e-233 811.6 787 53.1
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 6.9e-233 811.2 784 54.3
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 6.9e-233 811.2 783 54.9
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 1.2e-232 810.4 788 53.9
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 3.4e-232 808.9 783 53.9
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 1.3e-231 807.0 782 55.0
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 1.7e-231 806.6 686 59.6
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 4.9e-231 805.1 782 54.7
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 3.2e-230 802.4 794 53.3
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 4.2e-230 802.0 789 53.7
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 9.3e-230 800.8 786 53.7
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 1.7e-228 796.6 792 53.4
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.5e-227 793.5 789 52.5
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 4.3e-227 792.0 779 54.8
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 4.3e-227 792.0 786 53.3
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 4.3e-227 792.0 786 53.2
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 5.6e-227 791.6 785 52.5
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 9.6e-227 790.8 785 53.0
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 1.3e-226 790.4 786 52.3
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 1.6e-226 790.0 787 52.6
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 2.1e-226 789.6 784 54.5
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 6.2e-226 788.1 791 52.8
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 8.1e-226 787.7 785 52.0
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 8.1e-226 787.7 786 53.3
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.4e-225 786.9 782 52.9
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 1.8e-225 786.6 783 54.4
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 9.0e-225 784.3 786 52.9
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 1.2e-224 783.9 785 52.0
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 3.4e-224 782.3 787 53.9
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 7.6e-224 781.2 788 52.4
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 9.9e-224 780.8 791 53.2
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 9.9e-224 780.8 784 52.4
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 2.9e-223 779.2 785 52.1
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 3.8e-223 778.9 783 51.6
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 6.4e-223 778.1 785 52.4
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 1.9e-222 776.5 790 52.9
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 3.2e-222 775.8 790 52.3
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 1.3e-220 770.4 794 53.4
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 2.3e-220 769.6 789 52.9
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 3.0e-220 769.2 786 52.0
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 6.7e-220 768.1 787 52.4
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 6.7e-220 768.1 789 51.6
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 6.7e-220 768.1 790 51.9
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 8.7e-220 767.7 792 52.9
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 5.6e-219 765.0 785 51.8
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 1.3e-218 763.8 785 51.8
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 1.6e-218 763.5 787 52.0
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 6.2e-218 761.5 784 52.0
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 1.1e-217 760.8 785 51.6
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 1.8e-217 760.0 790 52.0
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 5.3e-217 758.4 790 52.0
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 1.2e-216 757.3 790 51.8
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 3.4e-216 755.7 784 51.1
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 3.8e-215 752.3 783 53.3
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 6.0e-213 745.0 789 50.6
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 2.1e-210 736.5 810 49.6
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 4.8e-210 735.3 823 49.8
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 9.0e-209 731.1 783 51.6
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 2.0e-208 729.9 570 65.6
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 5.8e-208 728.4 785 50.7
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 1.7e-207 726.9 760 50.9
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.7e-207 726.9 782 50.6
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 2.3e-204 716.5 765 51.0
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 3.7e-202 709.1 766 49.6
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 4.2e-198 695.7 786 50.4
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 4.6e-197 692.2 789 47.0
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 8.7e-196 688.0 542 64.4
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 1.3e-183 647.5 800 45.0
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 4.8e-178 629.0 796 44.7
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 9.4e-174 614.8 791 44.1
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 2.0e-171 607.1 622 51.1
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 3.3e-171 606.3 565 54.3
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 6.3e-170 602.1 777 43.8
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 1.7e-167 594.0 820 42.7
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 1.9e-166 590.5 799 43.1
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 5.2e-164 582.4 650 50.3
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 3.4e-163 579.7 607 51.9
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 1.4e-161 574.3 862 40.4
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 5.4e-137 492.7 695 40.9
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 5.2e-132 476.1 895 34.7
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 9.5e-126 455.3 861 35.1
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 9.5e-126 455.3 927 34.2
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.3e-77 295.4 229 62.0
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 1.4e-71 275.4 890 27.1
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 8.8e-71 272.7 317 47.3
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 3.1e-60 237.7 712 27.5
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 1.2e-46 192.6 310 35.2
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 2.2e-45 188.3 292 39.4
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.0e-42 179.5 223 48.0
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.3e-37 162.5 213 43.7
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 5.6e-33 147.1 231 40.3
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 5.6e-33 147.1 231 40.3
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 5.6e-33 147.1 179 48.6
Rhsim07G0149200 Rhododendron simsii HOM05D003993 ORTHO05D005336 1.7e-29 135.6 106 61.3
AUR62015641 Chenopodium quinoa HOM05D001729 ORTHO05D001155 2.1e-24 118.6 65 96.9
arahy.Tifrunner.gnm1.ann1.8I3UM6 Arachis hypogaea HOM05D003993 ORTHO05D005336 8.3e-21 106.7 106 51.9
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.9e-20 105.5 75 72.0
BolC5t33071H Brassica oleracea HOM05D000001 ORTHO05D000003 7.8e-19 100.1 176 35.2
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 1.0e-18 99.8 133 44.4
Gorai.001G142700 Gossypium raimondii HOM05D003993 ORTHO05D014907 6.6e-18 97.1 182 36.3
Gohir.D01G097266 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.1e-17 96.3 71 66.2
Gohir.A05G172101 Gossypium hirsutum HOM05D003993 ORTHO05D014907 5.6e-17 94.0 182 35.7
Gohir.A05G278766 Gossypium hirsutum HOM05D003993 ORTHO05D014907 5.6e-17 94.0 182 35.7
Gohir.A10G041333 Gossypium hirsutum HOM05D003993 ORTHO05D014907 9.5e-17 93.2 71 64.8
Gorai.002G111900 Gossypium raimondii HOM05D003993 ORTHO05D014907 1.2e-16 92.8 182 35.2
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 4.7e-16 90.9 70 64.3
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 1.8e-15 89.0 138 38.4
BcaC05g28290 Brassica carinata HOM05D003993 ORTHO05D005336 3.1e-15 88.2 186 30.1
arahy.Tifrunner.gnm1.ann1.BQ4HID Arachis hypogaea HOM05D003993 ORTHO05D005336 1.2e-14 86.3 87 48.3
Gohir.A10G071633 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.1e-12 79.7 58 65.5
arahy.Tifrunner.gnm1.ann1.N54FIB Arachis hypogaea HOM05D003993 ORTHO05D014907 1.4e-12 79.3 110 39.1
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 5.4e-12 77.4 110 39.1
arahy.Tifrunner.gnm1.ann1.5R4HUS Arachis hypogaea HOM05D003993 ORTHO05D014907 7.1e-12 77.0 58 65.5
arahy.Tifrunner.gnm1.ann1.GX0MR1 Arachis hypogaea HOM05D003993 ORTHO05D014907 2.1e-11 75.5 53 69.8
arahy.Tifrunner.gnm1.ann1.SWME7Z Arachis hypogaea HOM05D003993 ORTHO05D014907 2.7e-11 75.1 61 63.9
Rhsim07G0135200 Rhododendron simsii HOM05D000810 ORTHO05D001064 7.8e-11 73.6 65 58.5
TPR.G25926 Trifolium pratense HOM05D001139 ORTHO05D000936 2.3e-10 72.0 52 63.5
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 8.1e-08 63.5 166 30.7
arahy.Tifrunner.gnm1.ann1.U93GY2 Arachis hypogaea HOM05D003993 ORTHO05D014907 4.0e-07 61.2 220 28.2
C05p43480 Brassica napus HOM05D000001 ORTHO05D000003 3.4e-06 58.2 60 38.3


User provided reference genes

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