Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020550 Chenopodium quinoa HOM05D002065 ORTHO05D002050 7.2e-127 457.2 224 100.0
AUR62015650 Chenopodium quinoa HOM05D002065 ORTHO05D002050 1.8e-109 399.4 219 90.4
AUR62020551 Chenopodium quinoa HOM05D002065 ORTHO05D002050 2.5e-47 193.0 199 55.8
EL10Ac4g07956 Beta vulgaris HOM05D002065 ORTHO05D002050 5.4e-42 175.3 225 48.9
EL10Ac4g07957 Beta vulgaris HOM05D002065 ORTHO05D002050 9.0e-37 157.9 219 44.7
AUR62015651 Chenopodium quinoa HOM05D002065 ORTHO05D002050 3.5e-33 146.0 215 45.6
AUR62015648 Chenopodium quinoa HOM05D002065 ORTHO05D023830 8.1e-30 134.8 175 46.9
EL10Ac4g07955 Beta vulgaris HOM05D002065 ORTHO05D002050 3.1e-29 132.9 190 42.1
AUR62015649 Chenopodium quinoa HOM05D002065 ORTHO05D002050 9.6e-23 111.3 182 38.5
AUR62015652 Chenopodium quinoa HOM05D002065 ORTHO05D002050 1.3e-22 110.9 203 38.4
AUR62020549 Chenopodium quinoa HOM05D002065 ORTHO05D002050 3.7e-22 109.4 203 37.4
AUR62020552 Chenopodium quinoa HOM05D002065 ORTHO05D002050 1.5e-20 104.0 166 42.2
Actinidia35318 Actinidia chinensis HOM05D000018 ORTHO05D001766 2.6e-20 103.2 167 38.3
Dinv40711 Davidia involucrata HOM05D002065 ORTHO05D001766 1.7e-19 100.5 181 37.6
TAR629G2752 Trochodendron aralioides HOM05D002065 ORTHO05D002050 2.2e-19 100.1 219 33.3
Haze_09616 Corylus avellana HOM05D002065 ORTHO05D002050 2.9e-19 99.8 219 36.1
Cfa020412 Carpinus fangiana HOM05D002065 ORTHO05D002050 1.4e-18 97.4 207 36.7
Manes.03G123200 Manihot esculenta HOM05D002065 ORTHO05D002050 3.2e-18 96.3 210 33.8
DCAR_022527 Daucus carota HOM05D002065 ORTHO05D002050 5.5e-18 95.5 179 38.0
DCAR_022526 Daucus carota HOM05D002065 ORTHO05D002050 7.2e-18 95.1 151 39.1
Cc05_g13270 Coffea canephora HOM05D002065 ORTHO05D002050 1.0e-16 91.3 159 39.6
PSO017G0621 Papaver somniferum HOM05D002065 ORTHO05D002050 1.0e-16 91.3 211 32.7
Aqoxy4G02007 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 1.3e-16 90.9 208 34.1
Migut.M01810 Erythranthe guttata HOM05D002065 ORTHO05D002050 1.8e-16 90.5 150 36.7
Dinv22303 Davidia involucrata HOM05D002065 ORTHO05D002050 3.0e-16 89.7 175 34.9
Hma1.2p1_1869F.1_g306060 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 3.9e-16 89.4 166 34.9
Manes.15G076400 Manihot esculenta HOM05D002065 ORTHO05D002050 3.9e-16 89.4 210 31.9
PSO170G3882 Papaver somniferum HOM05D002065 ORTHO05D002050 3.9e-16 89.4 175 33.7
Lj8P166T75 Lonicera japonica HOM05D002065 ORTHO05D002050 5.1e-16 89.0 176 34.1
TWI38G0302 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 1.1e-15 87.8 174 32.2
Actinidia09932 Actinidia chinensis HOM05D002065 ORTHO05D002050 1.5e-15 87.4 166 36.7
MBI18_g44238_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 1.9e-15 87.0 202 33.7
ClCG05G014750 Citrullus lanatus HOM05D002065 ORTHO05D002050 4.3e-15 85.9 181 32.6
TWI39G0180 Tripterygium wilfordii HOM05D002065 ORTHO05D002050 4.3e-15 85.9 167 32.9
Hma1.2p1_1869F.1_g306050 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 1.6e-14 84.0 145 35.2
Lsat_1_v5_gn_5_5781 Lactuca sativa HOM05D002065 ORTHO05D002050 1.6e-14 84.0 122 38.5
SGA_v2.0_scaffold27G11640 Striga asiatica HOM05D002065 ORTHO05D002050 1.6e-14 84.0 181 33.7
MBI18_g44237_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 2.2e-14 83.6 177 33.9
RhsimUnG0253100 Rhododendron simsii HOM05D002065 ORTHO05D002050 2.2e-14 83.6 161 36.0
Cpa.g.c26548.3 Carica papaya HOM05D002065 ORTHO05D002050 2.8e-14 83.2 171 35.1
MD11G1225800 Malus domestica HOM05D002065 ORTHO05D002050 2.8e-14 83.2 214 29.9
TAR626G1743 Trochodendron aralioides HOM05D002065 ORTHO05D002050 2.8e-14 83.2 183 31.1
FAN16G0462 Fragaria x ananassa HOM05D002065 ORTHO05D002050 4.8e-14 82.4 184 32.1
MELO3C018104.2 Cucumis melo HOM05D002065 ORTHO05D002050 1.1e-13 81.3 140 33.6
Hma1.2p1_1564F.1_g290830 Hydrangea macrophylla HOM05D002065 ORTHO05D002050 1.1e-13 81.3 155 34.8
FvH4_3g21890 Fragaria vesca HOM05D002065 ORTHO05D002050 1.4e-13 80.9 150 34.7
FAN11G3928 Fragaria x ananassa HOM05D002065 ORTHO05D002050 1.4e-13 80.9 150 34.7
Lsat_1_v5_gn_3_120800 Lactuca sativa HOM05D002065 ORTHO05D002050 1.4e-13 80.9 152 32.2
MBI18_g44236_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 1.8e-13 80.5 186 33.3
Sc01g0007380 Simmondsia chinensis HOM05D002065 ORTHO05D002050 1.8e-13 80.5 162 34.6
MSTRG.14416 Avicennia marina HOM05D002065 ORTHO05D002050 2.4e-13 80.1 153 35.9
FAN21G3193 Fragaria x ananassa HOM05D002065 ORTHO05D002050 2.4e-13 80.1 184 31.5
MBI18_g41997_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 2.4e-13 80.1 147 36.7
PSO732G0449 Papaver somniferum HOM05D002065 ORTHO05D002050 2.4e-13 80.1 138 37.7
TAR626G0982 Trochodendron aralioides HOM05D002065 ORTHO05D002050 2.4e-13 80.1 180 31.7
Sed0026241 Sechium edule HOM05D002065 ORTHO05D002050 4.1e-13 79.3 142 34.5
Oeu007631.2 Olea europaea HOM05D002065 ORTHO05D002050 5.3e-13 79.0 185 30.8
CsaV3_3G023120 Cucumis sativus L. HOM05D002065 ORTHO05D002050 6.9e-13 78.6 184 32.6
Oeu042915.1 Olea europaea HOM05D002065 ORTHO05D002050 6.9e-13 78.6 134 36.6
DCAR_022525 Daucus carota HOM05D002065 ORTHO05D002050 9.0e-13 78.2 211 29.9
Lj8C77T5 Lonicera japonica HOM05D002065 ORTHO05D002050 1.2e-12 77.8 150 34.0
Cfa020411 Carpinus fangiana HOM05D002065 ORTHO05D002050 1.5e-12 77.4 170 31.8
PSO541G2674 Papaver somniferum HOM05D002065 ORTHO05D002050 1.5e-12 77.4 172 32.0
PSO017G7112 Papaver somniferum HOM05D002065 ORTHO05D002050 4.5e-12 75.9 144 33.3
PSO675G5185 Papaver somniferum HOM05D002065 ORTHO05D002050 4.5e-12 75.9 138 34.8
MD03G1210900 Malus domestica HOM05D002065 ORTHO05D002050 5.9e-12 75.5 180 32.2
PSO541G3516 Papaver somniferum HOM05D002065 ORTHO05D002050 5.9e-12 75.5 177 33.9
Sed0007986 Sechium edule HOM05D002065 ORTHO05D002050 5.9e-12 75.5 142 34.5
Haze_09617 Corylus avellana HOM05D002065 ORTHO05D002050 7.7e-12 75.1 188 32.4
Oeu062613.1 Olea europaea HOM05D002065 ORTHO05D002050 7.7e-12 75.1 162 30.9
QL08p013247 Quercus lobata HOM05D002065 ORTHO05D002050 7.7e-12 75.1 207 31.9
SalBow8G3023 Salvia bowleyana HOM05D002065 ORTHO05D002050 7.7e-12 75.1 183 32.2
PSO210G3167 Papaver somniferum HOM05D002065 ORTHO05D002050 1.0e-11 74.7 175 32.0
Oeu007632.1 Olea europaea HOM05D002065 ORTHO05D002050 1.3e-11 74.3 219 28.8
PSO063G4351 Papaver somniferum HOM05D002065 ORTHO05D002050 1.7e-11 73.9 174 32.8
RcHm_v2.0_Chr5g0037701 Rosa chinensis HOM05D002065 ORTHO05D002050 2.2e-11 73.6 211 28.9
Aa31LG8G7410 Aethionema arabicum HOM05D002065 ORTHO05D002050 2.9e-11 73.2 151 33.1
MD03G1211100 Malus domestica HOM05D002065 ORTHO05D002050 2.9e-11 73.2 180 32.8
THA.LOC104817885 Tarenaya hassleriana HOM05D002065 ORTHO05D002050 3.8e-11 72.8 175 32.0
PSO675G1570 Papaver somniferum HOM05D002065 ORTHO05D002050 5.0e-11 72.4 147 34.7
MD03G1211000 Malus domestica HOM05D002065 ORTHO05D002050 8.5e-11 71.6 180 32.2
PSO675G4979 Papaver somniferum HOM05D002065 ORTHO05D002050 8.5e-11 71.6 152 32.2
Prupe.4G204400 Prunus persica HOM05D002065 ORTHO05D002050 1.1e-10 71.2 171 33.3
Sabra16G0283800 Salix brachista HOM05D002065 ORTHO05D002050 1.1e-10 71.2 171 31.0
CiPaw.11G184300 Carya illinoinensis HOM05D002065 ORTHO05D002050 2.5e-10 70.1 135 34.1
Ciclev10009510m.g Citrus clementina HOM05D002065 ORTHO05D002050 3.2e-10 69.7 191 31.9
PSO675G9369 Papaver somniferum HOM05D002065 ORTHO05D002050 4.2e-10 69.3 153 32.7
Aa31LG8G7400 Aethionema arabicum HOM05D002065 ORTHO05D002050 5.5e-10 68.9 176 31.8
Lj8C77T4 Lonicera japonica HOM05D002065 ORTHO05D002050 5.5e-10 68.9 169 32.0
Potri.011G133900 Populus trichocarpa HOM05D002065 ORTHO05D002050 7.2e-10 68.6 173 31.8
Eucgr.F00981 Eucalyptus grandis HOM05D002065 ORTHO05D002050 9.4e-10 68.2 167 30.5
Glyma.12G214100 Glycine max HOM05D002065 ORTHO05D002050 9.4e-10 68.2 147 29.3
Lsat_1_v5_gn_3_1981 Lactuca sativa HOM05D002065 ORTHO05D002050 9.4e-10 68.2 186 25.3
Nn1g07007 Nelumbo nucifera HOM05D002065 ORTHO05D002050 9.4e-10 68.2 173 32.9
PSO541G3356 Papaver somniferum HOM05D002065 ORTHO05D002050 9.4e-10 68.2 147 34.0
A01p34210 Brassica napus HOM05D002065 ORTHO05D002050 1.2e-09 67.8 207 30.4
BraA01t03521Z Brassica rapa HOM05D002065 ORTHO05D002050 1.2e-09 67.8 207 30.4
BcaC09g49003 Brassica carinata HOM05D002065 ORTHO05D002050 1.6e-09 67.4 208 30.8
Potri.001G418000 Populus trichocarpa HOM05D002065 ORTHO05D002050 1.6e-09 67.4 221 30.3
BolC1t04321H Brassica oleracea HOM05D002065 ORTHO05D002050 2.1e-09 67.0 207 30.4
Thhalv10021500m.g Eutrema salsugineum HOM05D002065 ORTHO05D002050 2.1e-09 67.0 206 29.1
DCAR_020516 Daucus carota HOM05D002065 ORTHO05D002050 2.7e-09 66.6 184 28.8
MBI02_g10994_MAGBIO Magnolia biondii HOM05D002065 ORTHO05D002050 3.6e-09 66.2 165 29.1
Medtr2g082990 Medicago truncatula HOM05D002065 ORTHO05D002050 3.6e-09 66.2 186 28.0
CARHR096380 Cardamine hirsuta HOM05D002065 ORTHO05D002050 4.6e-09 65.9 183 30.1
Lalb_Chr14g0366161 Lupinus albus HOM05D002065 ORTHO05D002050 7.9e-09 65.1 145 30.3
PSO541G5395 Papaver somniferum HOM05D002065 ORTHO05D002050 7.9e-09 65.1 190 28.9
PSO500G0109 Papaver somniferum HOM05D002065 ORTHO05D002050 1.0e-08 64.7 167 33.5
CANSAT64G1415 Cannabis sativa HOM05D002065 ORTHO05D002050 1.4e-08 64.3 168 30.4
Glyma.13G287500 Glycine max HOM05D002065 ORTHO05D002050 1.4e-08 64.3 151 30.5
BcaB04g20643 Brassica carinata HOM05D002065 ORTHO05D002050 2.3e-08 63.5 210 29.0
BcaC01g03546 Brassica carinata HOM05D002065 ORTHO05D002050 2.3e-08 63.5 207 28.5
C03p51220 Brassica napus HOM05D002065 ORTHO05D002050 2.3e-08 63.5 207 28.5
BolC3t17412H Brassica oleracea HOM05D002065 ORTHO05D002050 2.3e-08 63.5 207 28.5
Ca_01751_v3 Cicer arietinum L. HOM05D002065 ORTHO05D002050 2.3e-08 63.5 144 34.0
Lsat_1_v5_gn_9_1400 Lactuca sativa HOM05D042186 ORTHO05D036432 2.3e-08 63.5 162 30.9
Atru.chr2.3214 Acer truncatum HOM05D002065 ORTHO05D002050 3.9e-08 62.8 172 29.7
Sp3g18610 Schrenkiella parvula HOM05D002065 ORTHO05D002050 3.9e-08 62.8 209 29.7
DCAR_008384 Daucus carota HOM05D002065 ORTHO05D002050 5.1e-08 62.4 138 33.3
PSO675G4486 Papaver somniferum HOM05D002065 ORTHO05D002050 5.1e-08 62.4 189 31.2
AT3G20600 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 6.7e-08 62.0 150 30.7
CARHR096390 Cardamine hirsuta HOM05D002065 ORTHO05D002050 6.7e-08 62.0 178 29.2
BcaB04g19117 Brassica carinata HOM05D002065 ORTHO05D002050 8.8e-08 61.6 175 29.7
BcaB06g26126 Brassica carinata HOM05D002065 ORTHO05D002050 8.8e-08 61.6 213 27.2
Lj3g0020040 Lotus japonicus HOM05D002065 ORTHO05D002050 8.8e-08 61.6 173 25.4
Carub.0003s2057 Capsella rubella HOM05D002065 ORTHO05D002050 1.1e-07 61.2 145 31.7
Medtr4g081200 Medicago truncatula HOM05D002065 ORTHO05D002050 1.1e-07 61.2 140 31.4
Sp3g18650 Schrenkiella parvula HOM05D002065 ORTHO05D002050 1.1e-07 61.2 183 27.3
TPR.G25922 Trifolium pratense HOM05D002065 ORTHO05D002050 1.1e-07 61.2 111 36.0
Aqoxy4G00180 Aquilegia oxysepala HOM05D002065 ORTHO05D002050 1.5e-07 60.8 190 28.9
A03p41840 Brassica napus HOM05D002065 ORTHO05D002050 1.5e-07 60.8 207 29.0
BraA05t21707Z Brassica rapa HOM05D002065 ORTHO05D002050 1.5e-07 60.8 213 27.2
Oeu025507.1 Olea europaea HOM05D002065 ORTHO05D002050 1.5e-07 60.8 131 31.3
A05p28250 Brassica napus HOM05D001038 ORTHO05D019929 2.0e-07 60.5 200 28.0
BraA03t13337Z Brassica rapa HOM05D002065 ORTHO05D002050 2.0e-07 60.5 207 28.0
CiPaw.11G184100 Carya illinoinensis HOM05D002065 ORTHO05D002050 2.0e-07 60.5 162 32.1
DCAR_008386 Daucus carota HOM05D002065 ORTHO05D002050 2.0e-07 60.5 114 32.5
DCAR_008380 Daucus carota HOM05D002065 ORTHO05D002050 2.6e-07 60.1 171 32.2
PGR083G2635 Punica granatum HOM05D002065 ORTHO05D002050 2.6e-07 60.1 155 30.3
AL3G34450 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 4.4e-07 59.3 157 29.3
AT3G20590 Arabidopsis thaliana HOM05D002065 ORTHO05D002050 4.4e-07 59.3 145 29.7
DCAR_008383 Daucus carota HOM05D002065 ORTHO05D002050 5.7e-07 58.9 181 30.4
Peaxi162Scf01086g00113 Petunia axillaris HOM05D002065 ORTHO05D002050 5.7e-07 58.9 91 33.0
Carub.0003s2058 Capsella rubella HOM05D002065 ORTHO05D002050 9.7e-07 58.2 199 26.6
Lsat_1_v5_gn_3_1961 Lactuca sativa HOM05D059448 ORTHO05D035029 9.7e-07 58.2 154 27.9
Sabra11G0120300 Salix brachista HOM05D002065 ORTHO05D002050 9.7e-07 58.2 117 32.5
C01p43600 Brassica napus HOM05D002065 ORTHO05D002050 1.3e-06 57.8 146 32.9
AL3G34460 Arabidopsis lyrata HOM05D002065 ORTHO05D002050 2.2e-06 57.0 150 29.3
Nn1g03650 Nelumbo nucifera HOM05D002065 ORTHO05D002050 2.2e-06 57.0 181 28.2
Psat7g161480 Pisum sativum HOM05D002065 ORTHO05D002050 2.2e-06 57.0 139 28.8
Thecc.07G052100 Theobroma cacao HOM05D002065 ORTHO05D002050 2.2e-06 57.0 171 29.8
Duzib170G0757 Durio zibethinus HOM05D002065 ORTHO05D002050 3.7e-06 56.2 220 27.3
PSO675G4715 Papaver somniferum HOM05D002065 ORTHO05D002050 3.7e-06 56.2 181 25.4
DCAR_008381 Daucus carota HOM05D002065 ORTHO05D002050 6.3e-06 55.5 114 34.2
PSO675G3057 Papaver somniferum HOM05D002065 ORTHO05D002050 6.3e-06 55.5 124 36.3


User provided reference genes

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