Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 2.7e-115 418.7 212 100.0
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 4.3e-89 331.6 180 93.3
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 2.7e-83 312.4 210 78.1
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 3.6e-80 302.0 210 72.9
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 4.0e-79 298.5 210 72.4
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.8e-71 273.1 190 67.4
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 3.1e-71 272.3 189 69.8
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 5.3e-71 271.6 189 70.9
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 2.6e-70 269.2 189 68.8
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.7e-69 266.5 189 68.8
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 8.4e-69 264.2 191 68.1
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.1e-68 263.8 191 68.1
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 1.1e-68 263.8 189 68.8
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 1.9e-68 263.1 190 67.4
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 7.1e-68 261.2 189 67.2
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.2e-67 260.4 193 66.3
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.6e-67 260.0 195 66.2
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 2.1e-67 259.6 190 70.0
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 2.7e-67 259.2 189 66.1
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.7e-67 259.2 191 68.1
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.5e-67 258.8 189 66.1
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 6.0e-67 258.1 189 66.1
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.3e-66 256.9 193 66.3
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 1.3e-66 256.9 191 67.5
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.8e-66 256.5 189 65.6
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 8.7e-66 254.2 190 65.3
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 8.7e-66 254.2 190 65.3
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.1e-65 253.8 190 67.9
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.1e-65 253.8 190 66.8
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.1e-65 253.8 189 65.6
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.5e-65 253.4 190 64.7
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.5e-65 253.4 202 60.9
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 2.5e-65 252.7 193 63.7
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 3.3e-65 252.3 194 64.9
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 4.3e-65 251.9 190 66.8
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 5.7e-65 251.5 190 65.3
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 7.4e-65 251.1 192 65.6
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 7.4e-65 251.1 194 65.5
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 7.4e-65 251.1 188 64.4
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.3e-64 250.4 190 66.3
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.6e-64 250.0 199 61.8
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.6e-64 250.0 210 63.3
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.6e-64 250.0 191 65.4
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.7e-64 248.8 193 64.8
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 4.8e-64 248.4 189 64.0
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.2e-64 248.1 188 63.3
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 1.1e-63 247.3 189 63.5
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.1e-63 247.3 194 63.9
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.4e-63 246.1 189 65.1
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 4.1e-63 245.4 189 64.6
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.1e-63 245.4 189 65.6
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.1e-63 245.4 189 64.6
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 5.3e-63 245.0 190 62.6
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 6.9e-63 244.6 210 63.3
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 9.0e-63 244.2 188 63.3
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 9.0e-63 244.2 189 63.0
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 9.0e-63 244.2 190 63.7
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.2e-62 243.8 189 63.0
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 1.2e-62 243.8 189 64.6
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.0e-62 243.0 188 61.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 3.4e-62 242.3 190 62.1
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 4.5e-62 241.9 189 61.9
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 5.8e-62 241.5 189 64.6
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 5.8e-62 241.5 189 62.4
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 7.6e-62 241.1 189 61.9
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.7e-61 240.0 188 62.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.7e-61 240.0 188 62.2
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.2e-61 239.6 176 66.5
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 2.2e-61 239.6 188 63.3
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.1e-60 237.3 197 60.9
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.4e-60 236.9 190 61.6
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 2.1e-59 233.0 177 63.8
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 3.5e-59 232.3 197 59.9
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 3.5e-59 232.3 197 60.4
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.0e-58 230.7 190 60.5
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 1.0e-58 230.7 179 61.5
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.3e-58 230.3 189 60.8
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 3.9e-58 228.8 208 55.8
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 8.7e-58 227.6 207 57.5
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 8.7e-58 227.6 191 60.7
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.5e-57 226.1 187 59.9
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 2.5e-57 226.1 188 60.1
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 4.3e-57 225.3 193 59.6
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 5.7e-57 224.9 188 58.5
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 3.7e-56 222.2 188 59.0
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 6.3e-56 221.5 177 61.0
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 6.3e-56 221.5 188 59.0
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 6.3e-56 221.5 191 61.3
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 4.1e-55 218.8 188 61.2
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 9.0e-55 217.6 189 60.3
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.0e-54 216.5 155 66.5
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 4.5e-54 215.3 195 57.9
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.9e-52 209.9 291 44.3
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 7.2e-52 208.0 189 56.6
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 7.2e-52 208.0 191 58.6
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.2e-51 207.2 247 47.8
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 6.1e-51 204.9 189 55.0
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.8e-50 203.4 189 55.0
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.8e-50 203.4 189 54.0
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 8.8e-50 201.1 185 54.6
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 1.1e-49 200.7 183 56.3
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.7e-48 196.8 189 53.4
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 3.7e-48 195.7 189 53.4
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 4.8e-48 195.3 189 52.9
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 8.2e-48 194.5 189 52.9
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.4e-47 193.7 194 53.6
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.4e-47 193.0 190 55.3
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 5.3e-47 191.8 189 51.9
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.5e-46 190.3 189 54.5
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.5e-46 190.3 189 51.3
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 4.5e-46 188.7 190 52.1
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.0e-45 187.6 191 52.9
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 1.7e-45 186.8 182 54.4
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 2.9e-45 186.0 193 52.8
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.5e-45 184.9 179 55.3
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.4e-44 183.7 194 51.0
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.9e-44 183.3 189 51.3
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 5.5e-44 181.8 190 52.1
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 3.6e-43 179.1 189 52.9
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 7.9e-43 177.9 146 60.3
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.8e-42 176.8 153 60.8
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.8e-42 176.8 147 61.2
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 5.1e-42 175.3 184 51.6
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 6.7e-42 174.9 193 52.3
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.3e-41 172.6 191 51.3
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 5.7e-41 171.8 177 51.4
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.7e-37 160.2 119 62.2
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 1.7e-32 143.7 161 49.7
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.8e-32 142.9 180 48.3
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 3.7e-32 142.5 100 71.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.1e-31 141.0 145 46.2
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 4.1e-31 139.0 96 71.9
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 4.2e-28 129.0 111 56.8
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.2e-27 127.5 99 66.7
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 8.0e-27 124.8 124 51.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.0e-26 122.9 94 61.7
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 6.8e-26 121.7 85 62.4
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 7.5e-25 118.2 146 43.8
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 6.3e-24 115.2 135 51.1
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.2e-22 110.9 117 53.0
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 2.2e-21 106.7 157 40.8
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.5e-20 104.0 103 56.3
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.2e-20 102.8 95 54.7
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 9.4e-20 101.3 95 56.8
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 3.6e-19 99.4 91 58.2
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 6.8e-18 95.1 113 44.2
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.5e-17 94.0 115 45.2
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 2.0e-17 93.6 115 44.3
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 2.9e-13 79.7 119 38.7
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 6.6e-13 78.6 65 60.0
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 2.5e-12 76.6 57 73.7
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 4.3e-12 75.9 138 34.8
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 1.2e-11 74.3 65 58.5
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.8e-11 73.2 85 49.4
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 1.0e-10 71.2 45 68.9
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 9.8e-09 64.7 66 54.5


User provided reference genes

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