Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020397 Chenopodium quinoa HOM05D004357 ORTHO05D005064 9.0e-71 270.4 163 100.0
AUR62015823 Chenopodium quinoa HOM05D004357 ORTHO05D005064 7.9e-67 257.3 163 93.3
AUR62015821 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.0e-58 230.3 144 93.1
AUR62020398 Chenopodium quinoa HOM05D004357 ORTHO05D005064 1.7e-48 196.4 163 68.7
AUR62020395 Chenopodium quinoa HOM05D004357 ORTHO05D005064 3.4e-41 172.2 163 71.8
Ah.06g182580 Amaranthus hybridus HOM05D004357 ORTHO05D005064 8.0e-35 151.0 168 66.7
AUR62015824 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.4e-33 145.2 137 54.0
AUR62020394 Chenopodium quinoa HOM05D004357 ORTHO05D005064 4.8e-32 141.7 135 54.8
Sc07g0002830 Simmondsia chinensis HOM05D004357 ORTHO05D005064 3.9e-21 105.5 163 56.4
Sc16g0005860 Simmondsia chinensis HOM05D004357 ORTHO05D005064 8.6e-21 104.4 168 56.0
CiPaw.12G131900 Carya illinoinensis HOM05D004357 ORTHO05D005064 4.7e-19 98.6 168 56.5
Ciclev10010614m.g Citrus clementina HOM05D004357 ORTHO05D005064 4.0e-18 95.5 81 58.0
QL08p009100 Quercus lobata HOM05D004357 ORTHO05D005064 5.2e-18 95.1 169 52.7
DCAR_022585 Daucus carota HOM05D004357 ORTHO05D005064 6.8e-18 94.7 147 58.5
DCAR_016717 Daucus carota HOM05D004357 ORTHO05D005064 2.0e-17 93.2 165 53.3
Manes.15G068600 Manihot esculenta HOM05D004357 ORTHO05D005064 5.8e-17 91.7 126 41.3
HanXRQChr11g0334081 Helianthus annuus HOM05D004357 ORTHO05D005064 7.5e-17 91.3 107 70.1
CANSAT11G1041 Cannabis sativa HOM05D004357 ORTHO05D005064 9.8e-17 90.9 133 41.4
MD11G1213000 Malus domestica HOM05D004357 ORTHO05D005064 2.9e-16 89.4 166 54.8
Potri.001G356600 Populus trichocarpa HOM05D004357 ORTHO05D005064 2.9e-16 89.4 134 36.6
Glyma.18G092400 Glycine max HOM05D004357 ORTHO05D005064 3.7e-16 89.0 121 41.3
Lsat_1_v5_gn_2_77680 Lactuca sativa HOM05D004357 ORTHO05D005064 3.7e-16 89.0 162 54.3
Solyc06g073220.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 4.9e-16 88.6 161 50.3
HanXRQChr17g0546371 Helianthus annuus HOM05D004357 ORTHO05D005064 8.3e-16 87.8 164 52.4
Sopen06g029590 Solanum pennellii HOM05D007023 ORTHO05D008684 1.1e-15 87.4 121 42.1
FAN16G2316 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.4e-15 87.0 162 51.2
FAN21G0700 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.4e-15 87.0 162 51.9
FAN25G0038 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.4e-15 87.0 162 51.9
Sabra16G0234300 Salix brachista HOM05D004357 ORTHO05D005064 1.4e-15 87.0 132 37.9
Sabra16G0234600 Salix brachista HOM05D004357 ORTHO05D005064 1.4e-15 87.0 132 37.9
Actinidia35360 Actinidia chinensis HOM05D004357 ORTHO05D005064 1.9e-15 86.7 122 40.2
Dinv40782 Davidia involucrata HOM05D001348 ORTHO05D008393 1.9e-15 86.7 132 40.9
FAN25G2170 Fragaria x ananassa HOM05D004357 ORTHO05D005064 1.9e-15 86.7 162 51.9
Lsat_1_v5_gn_7_114360 Lactuca sativa HOM05D004357 ORTHO05D005064 1.9e-15 86.7 158 50.6
MD03G1197000 Malus domestica HOM05D004357 ORTHO05D005064 2.4e-15 86.3 81 56.8
Potri.011G080800 Populus trichocarpa HOM05D004357 ORTHO05D005064 3.2e-15 85.9 128 35.9
Eucgr.F00736 Eucalyptus grandis HOM05D004357 ORTHO05D005064 4.1e-15 85.5 126 38.9
Glyma.08G320000 Glycine max HOM05D004357 ORTHO05D005064 4.1e-15 85.5 128 40.6
Lsat_1_v5_gn_3_15001 Lactuca sativa HOM05D004357 ORTHO05D005064 4.1e-15 85.5 159 48.4
Lsat_1_v5_gn_9_92180 Lactuca sativa HOM05D004357 ORTHO05D005064 5.4e-15 85.1 109 66.1
Phvul.006G047200 Phaseolus vulgaris HOM05D004357 ORTHO05D005064 5.4e-15 85.1 125 40.8
RcHm_v2.0_Chr5g0040831 Rosa chinensis HOM05D004357 ORTHO05D005064 7.0e-15 84.7 164 51.2
ECA236G1539 Erigeron canadensis HOM05D004357 ORTHO05D005064 9.2e-15 84.3 108 68.5
FvH4_3g23190 Fragaria vesca HOM05D004357 ORTHO05D005064 9.2e-15 84.3 163 51.5
FAN11G2993 Fragaria x ananassa HOM05D004357 ORTHO05D005064 9.2e-15 84.3 163 51.5
HanXRQChr13g0408531 Helianthus annuus HOM05D004357 ORTHO05D005064 1.2e-14 84.0 108 61.1
Lsat_1_v5_gn_7_114381 Lactuca sativa HOM05D004357 ORTHO05D005064 1.2e-14 84.0 164 53.0
Nitab4.5_0012195g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.2e-14 84.0 107 60.7
Prupe.4G218300 Prunus persica HOM05D004357 ORTHO05D005064 1.2e-14 84.0 127 36.2
TWI39G1080 Tripterygium wilfordii HOM05D004357 ORTHO05D005064 1.2e-14 84.0 127 40.9
Lj8C171T1 Lonicera japonica HOM05D004357 ORTHO05D005064 1.6e-14 83.6 119 40.3
TPR.G14428 Trifolium pratense HOM05D004357 ORTHO05D005064 1.6e-14 83.6 126 41.3
Manes.03G133800 Manihot esculenta HOM05D004357 ORTHO05D005064 2.0e-14 83.2 132 40.2
VMungo0540G0503 Vigna mungo HOM05D004357 ORTHO05D005064 2.0e-14 83.2 126 38.1
Nitab4.5_0004983g0010 Nicotiana tabacum HOM05D004357 ORTHO05D005064 2.7e-14 82.8 149 48.3
TAR629G2714 Trochodendron aralioides HOM05D004357 ORTHO05D005064 2.7e-14 82.8 124 41.1
ECA236G2715 Erigeron canadensis HOM05D004357 ORTHO05D005064 4.6e-14 82.0 107 67.3
HanXRQChr03g0076711 Helianthus annuus HOM05D004357 ORTHO05D005064 6.0e-14 81.6 109 66.1
Duzib213G0508 Durio zibethinus HOM05D004357 ORTHO05D005064 1.0e-13 80.9 120 40.8
Nitab4.5_0002598g0090 Nicotiana tabacum HOM05D004357 ORTHO05D005064 1.0e-13 80.9 121 58.7
Ca_03254_v3 Cicer arietinum L. HOM05D004357 ORTHO05D005064 1.3e-13 80.5 124 41.1
SalBow1G5576 Salvia bowleyana HOM05D004357 ORTHO05D005064 1.3e-13 80.5 109 42.2
EL10Ac4g07764 Beta vulgaris HOM05D004357 ORTHO05D005064 1.7e-13 80.1 83 54.2
Cpa.g.sc12.272 Carica papaya HOM05D004357 ORTHO05D005064 1.7e-13 80.1 88 47.7
PGSC0003DMG402027015 Solanum tuberosum HOM05D004357 ORTHO05D005064 3.9e-13 79.0 137 51.1
CsaV3_3G004660 Cucumis sativus L. HOM05D004357 ORTHO05D005064 5.0e-13 78.6 131 35.9
Duzib170G0654 Durio zibethinus HOM05D004357 ORTHO05D005064 5.0e-13 78.6 127 38.6
Lj6g0011908 Lotus japonicus HOM05D004357 ORTHO05D005064 5.0e-13 78.6 129 39.5
Oeu039200.1 Olea europaea HOM05D004357 ORTHO05D005064 5.0e-13 78.6 107 57.9
AT1G50720 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 6.6e-13 78.2 73 49.3
C02p16430 Brassica napus HOM05D002089 ORTHO05D005064 6.6e-13 78.2 73 54.8
BolC2t07743H Brassica oleracea HOM05D002089 ORTHO05D005064 6.6e-13 78.2 73 54.8
Medtr4g044463 Medicago truncatula HOM05D004357 ORTHO05D005064 6.6e-13 78.2 126 40.5
Psat5g173760 Pisum sativum HOM05D004357 ORTHO05D005064 6.6e-13 78.2 128 38.3
BcaC03g14266 Brassica carinata HOM05D004357 ORTHO05D005064 8.6e-13 77.8 73 54.8
PGSC0003DMG400007032 Solanum tuberosum HOM05D004357 ORTHO05D005064 8.6e-13 77.8 127 57.5
Atru.chr2.3491 Acer truncatum HOM05D004357 ORTHO05D005064 1.9e-12 76.6 78 51.3
CAN.G112.17 Capsicum annuum HOM05D004357 ORTHO05D005064 1.9e-12 76.6 127 55.9
Gohir.A01G082600 Gossypium hirsutum HOM05D004357 ORTHO05D005064 1.9e-12 76.6 120 39.2
Oeu028003.1 Olea europaea HOM05D004357 ORTHO05D005064 3.3e-12 75.9 110 60.9
Gorai.002G091500 Gossypium raimondii HOM05D004357 ORTHO05D005064 5.6e-12 75.1 120 39.2
Carub.0008s1540 Capsella rubella HOM05D004357 ORTHO05D005064 7.3e-12 74.7 73 53.4
Thhalv10014856m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 9.5e-12 74.3 73 53.4
Lj6g0017870 Lotus japonicus HOM05D004357 ORTHO05D005064 9.5e-12 74.3 129 37.2
Thecc.07G032000 Theobroma cacao HOM05D004357 ORTHO05D005064 9.5e-12 74.3 132 37.1
A02p09880 Brassica napus HOM05D002089 ORTHO05D002848 1.2e-11 73.9 73 53.4
CARHR234490 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.2e-11 73.9 121 35.5
ClCG10G005000 Citrullus lanatus HOM05D004357 ORTHO05D005064 1.2e-11 73.9 125 37.6
Sp7g24830 Schrenkiella parvula HOM05D004357 ORTHO05D005064 1.2e-11 73.9 70 48.6
Solyc05g050730.1 Solanum lycopersicum HOM05D004357 ORTHO05D005064 1.2e-11 73.9 119 58.0
SGA_v2.0_scaffold12G06084 Striga asiatica HOM05D004357 ORTHO05D005064 1.2e-11 73.9 160 44.4
Aqoxy1G03059 Aquilegia oxysepala HOM05D004357 ORTHO05D005064 1.6e-11 73.6 170 48.8
BcaC01g06348 Brassica carinata HOM05D004357 ORTHO05D005064 1.6e-11 73.6 173 47.4
EL10Ac4g07762 Beta vulgaris HOM05D004357 ORTHO05D005064 2.1e-11 73.2 95 50.5
BolC3t14083H Brassica oleracea HOM05D004357 ORTHO05D005064 2.1e-11 73.2 169 50.3
Carub.0007s1397 Capsella rubella HOM05D004357 ORTHO05D005064 2.1e-11 73.2 124 37.9
Thhalv10027097m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 2.1e-11 73.2 73 46.6
Gohir.D01G069200 Gossypium hirsutum HOM05D004357 ORTHO05D005064 2.1e-11 73.2 121 37.2
BcaB05g22181 Brassica carinata HOM05D004357 ORTHO05D005064 3.6e-11 72.4 84 47.6
BraA02t06052Z Brassica rapa HOM05D002089 ORTHO05D002848 3.6e-11 72.4 73 52.1
BraA06t23496Z Brassica rapa HOM05D004357 ORTHO05D005064 3.6e-11 72.4 68 48.5
C09p45880 Brassica napus HOM05D004357 ORTHO05D005064 4.7e-11 72.0 73 50.7
MELO3C014164.2 Cucumis melo HOM05D004357 ORTHO05D005064 4.7e-11 72.0 169 44.4
BcaC08g43251 Brassica carinata HOM05D004357 ORTHO05D005064 6.2e-11 71.6 68 48.5
A06p02900 Brassica napus HOM05D004357 ORTHO05D005064 6.2e-11 71.6 68 48.5
C01p23050 Brassica napus HOM05D004357 ORTHO05D005064 6.2e-11 71.6 70 48.6
C06p05970 Brassica napus HOM05D004357 ORTHO05D005064 6.2e-11 71.6 68 48.5
BolC1t02239H Brassica oleracea HOM05D004357 ORTHO05D005064 6.2e-11 71.6 70 48.6
BolC6t35710H Brassica oleracea HOM05D004357 ORTHO05D005064 6.2e-11 71.6 68 48.5
Sp6g17040 Schrenkiella parvula HOM05D004357 ORTHO05D005064 6.2e-11 71.6 73 50.7
Migut.K00212 Erythranthe guttata HOM05D004357 ORTHO05D005064 8.0e-11 71.2 121 35.5
Sopen05g029140 Solanum pennellii HOM05D004357 ORTHO05D005064 8.0e-11 71.2 162 46.9
AL8G30610 Arabidopsis lyrata HOM05D004357 ORTHO05D005064 1.1e-10 70.9 73 52.1
BcaB08g35875 Brassica carinata HOM05D004357 ORTHO05D005064 1.1e-10 70.9 125 39.2
Carub.0001s3975 Capsella rubella HOM05D004357 ORTHO05D005064 1.1e-10 70.9 69 47.8
PGR083G1129 Punica granatum HOM05D004357 ORTHO05D005064 1.1e-10 70.9 126 36.5
CARHR268450 Cardamine hirsuta HOM05D004357 ORTHO05D005064 1.4e-10 70.5 88 46.6
Cc05_g14030 Coffea canephora HOM05D004357 ORTHO05D005064 2.3e-10 69.7 117 36.8
COL.COLO4_09694 Corchorus olitorius HOM05D004357 ORTHO05D005064 2.3e-10 69.7 75 48.0
BcaC04g20269 Brassica carinata HOM05D004357 ORTHO05D005064 3.1e-10 69.3 73 49.3
A10p12380 Brassica napus HOM05D004357 ORTHO05D005064 3.1e-10 69.3 73 49.3
BolC9t57436H Brassica oleracea HOM05D004357 ORTHO05D005064 3.1e-10 69.3 73 49.3
BraA10t43333Z Brassica rapa HOM05D004357 ORTHO05D005064 3.1e-10 69.3 73 49.3
AT5G55110 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 4.0e-10 68.9 73 52.1
Haze_09713 Corylus avellana HOM05D004357 ORTHO05D005064 4.0e-10 68.9 169 50.9
BraA01t01764Z Brassica rapa HOM05D004357 ORTHO05D005064 5.2e-10 68.6 114 35.1
CARHR040820 Cardamine hirsuta HOM05D004357 ORTHO05D005064 5.2e-10 68.6 122 32.8
A03p14230 Brassica napus HOM05D004357 ORTHO05D005064 6.8e-10 68.2 107 56.1
PSO541G4299 Papaver somniferum HOM05D004357 ORTHO05D005064 6.8e-10 68.2 87 44.8
Sed0014123 Sechium edule HOM05D004357 ORTHO05D005064 6.8e-10 68.2 165 47.9
Nn1g03453 Nelumbo nucifera HOM05D004357 ORTHO05D005064 8.9e-10 67.8 107 59.8
BcaB07g33511 Brassica carinata HOM05D004357 ORTHO05D005064 1.2e-09 67.4 68 47.1
BcaNung03559 Brassica carinata HOM05D004357 ORTHO05D005064 1.2e-09 67.4 70 44.3
THA.LOC104811623 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 1.2e-09 67.4 65 49.2
PSO541G1695 Papaver somniferum HOM05D004357 ORTHO05D005064 1.5e-09 67.0 84 44.0
THA.LOC104798766 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 2.6e-09 66.2 73 42.5
PSO135G0247 Papaver somniferum HOM05D004357 ORTHO05D005064 3.4e-09 65.9 122 38.5
Nitab4.5_0011467g0070 Nicotiana tabacum HOM05D004357 ORTHO05D005064 4.4e-09 65.5 163 45.4
A01p18090 Brassica napus HOM05D004357 ORTHO05D005064 5.8e-09 65.1 55 50.9
Aa31LG3G11030 Aethionema arabicum HOM05D004357 ORTHO05D005064 7.5e-09 64.7 89 40.4
THA.LOC104817674 Tarenaya hassleriana HOM05D004357 ORTHO05D005064 9.8e-09 64.3 118 37.3
BcaC01g06347 Brassica carinata HOM05D004357 ORTHO05D005064 1.3e-08 63.9 70 47.1
BraA03t10721Z Brassica rapa HOM05D000020 ORTHO05D002694 2.2e-08 63.2 67 43.3
Peaxi162Scf00126g00115 Petunia axillaris HOM05D004357 ORTHO05D005064 2.2e-08 63.2 109 35.8
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 3.7e-08 62.4 75 45.3
Thhalv10012189m.g Eutrema salsugineum HOM05D004357 ORTHO05D005064 1.9e-07 60.1 125 31.2
AT4G26880 Arabidopsis thaliana HOM05D004357 ORTHO05D005064 2.4e-07 59.7 127 33.9
BcaB01g04366 Brassica carinata HOM05D004357 ORTHO05D005064 7.1e-07 58.2 68 45.6
arahy.Tifrunner.gnm1.ann1.N0IC2B Arachis hypogaea HOM05D004357 ORTHO05D005064 9.2e-07 57.8 106 41.5
A03p14260 Brassica napus HOM05D004357 ORTHO05D005064 1.6e-06 57.0 69 40.6
BraA03t10723Z Brassica rapa HOM05D004357 ORTHO05D005064 1.6e-06 57.0 69 40.6
Peaxi162Scf01626g00015 Petunia axillaris HOM05D004357 ORTHO05D005064 1.6e-06 57.0 92 35.9


User provided reference genes

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