Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 5.5e-117 424.5 239 100.0
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.1e-53 214.2 235 52.3
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 5.1e-46 188.7 240 48.8
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 6.7e-30 135.2 237 40.1
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 6.7e-30 135.2 234 38.0
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 3.3e-29 132.9 242 36.8
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 9.6e-29 131.3 237 37.1
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.3e-28 131.0 238 37.4
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.3e-28 131.0 238 37.4
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.6e-28 130.6 236 37.7
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 6.2e-28 128.6 236 37.3
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 6.2e-28 128.6 238 37.8
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 8.1e-28 128.3 236 37.7
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.8e-27 127.1 236 36.9
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 9.0e-27 124.8 238 35.7
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.2e-26 124.4 237 36.3
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.2e-26 124.4 237 36.3
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.2e-26 124.4 235 37.4
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.5e-26 124.0 234 36.3
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.0e-26 123.6 237 37.6
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 5.8e-26 122.1 237 38.8
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 7.6e-26 121.7 138 44.9
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.6e-26 121.7 236 36.4
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 7.6e-26 121.7 236 36.9
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 1.3e-25 120.9 192 41.1
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 1.7e-25 120.6 237 34.2
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.7e-25 120.6 131 48.9
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 2.9e-25 119.8 239 36.8
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.9e-25 119.8 235 36.6
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 3.8e-25 119.4 234 35.9
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 3.8e-25 119.4 144 46.5
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 4.9e-25 119.0 213 38.5
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 6.4e-25 118.6 242 37.2
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 8.4e-25 118.2 137 45.3
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-24 117.9 137 44.5
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 3.2e-24 116.3 138 54.3
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.2e-24 115.9 240 36.7
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 5.5e-24 115.5 143 45.5
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 7.1e-24 115.2 234 36.8
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 9.3e-24 114.8 226 35.4
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 9.3e-24 114.8 136 47.1
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 9.3e-24 114.8 241 34.4
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 9.3e-24 114.8 143 45.5
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 9.3e-24 114.8 237 35.9
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-23 114.4 244 34.8
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.2e-23 114.4 240 35.4
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 1.6e-23 114.0 235 34.9
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.1e-23 113.6 237 36.3
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 3.5e-23 112.8 241 37.3
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 4.6e-23 112.5 241 37.3
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 7.9e-23 111.7 131 45.0
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.0e-22 111.3 131 54.2
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.0e-22 111.3 237 37.1
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 3.9e-22 109.4 244 33.2
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 6.7e-22 108.6 134 41.0
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 6.7e-22 108.6 146 43.8
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 1.1e-21 107.8 121 46.3
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.1e-21 107.8 146 42.5
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.9e-21 107.1 240 35.0
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.5e-21 106.7 121 45.5
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 3.3e-21 106.3 126 42.9
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 3.3e-21 106.3 128 45.3
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 4.3e-21 105.9 239 32.6
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 4.3e-21 105.9 143 44.1
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 5.6e-21 105.5 133 43.6
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 6.2e-20 102.1 199 36.2
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 8.2e-20 101.7 148 41.9
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.4e-19 100.9 121 46.3
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.8e-19 100.5 93 52.7
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 2.4e-19 100.1 131 43.5
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 3.1e-19 99.8 164 37.8
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 3.1e-19 99.8 146 40.4
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 5.3e-19 99.0 137 41.6
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 5.3e-19 99.0 125 42.4
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 9.0e-19 98.2 145 42.1
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.2e-18 97.8 86 53.5
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.2e-18 97.8 123 44.7
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 2.0e-18 97.1 234 32.9
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.6e-18 96.7 120 41.7
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.4e-18 96.3 81 54.3
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 5.8e-18 95.5 85 52.9
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 1.0e-17 94.7 240 33.8
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.2e-17 93.6 240 34.6
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.1e-16 91.3 261 33.3
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.1e-16 91.3 261 33.3
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.1e-16 91.3 242 30.6
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.4e-16 90.9 121 43.8
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.4e-16 90.9 88 51.1
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 3.2e-16 89.7 140 40.7
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 3.2e-16 89.7 116 42.2
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.2e-16 89.4 240 32.1
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 7.1e-16 88.6 141 41.8
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 7.1e-16 88.6 243 31.7
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 7.1e-16 88.6 184 35.9
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 1.2e-15 87.8 130 40.8
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 2.7e-15 86.7 125 41.6
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 3.5e-15 86.3 233 31.3
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 4.6e-15 85.9 84 51.2
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 4.6e-15 85.9 84 51.2
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 4.6e-15 85.9 142 38.7
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 6.0e-15 85.5 84 50.0
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 6.0e-15 85.5 84 50.0
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 6.0e-15 85.5 84 50.0
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 6.0e-15 85.5 122 38.5
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 6.0e-15 85.5 142 39.4
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 7.9e-15 85.1 240 31.7
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.9e-15 85.1 117 44.4
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.0e-14 84.7 142 40.1
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.8e-14 84.0 124 39.5
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.8e-14 84.0 85 49.4
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.3e-14 83.6 234 30.3
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.3e-14 83.6 87 47.1
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.3e-14 83.6 87 47.1
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.3e-14 83.6 87 47.1
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.0e-14 83.2 85 48.2
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 5.1e-14 82.4 130 40.8
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.7e-14 82.0 85 48.2
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 8.7e-14 81.6 124 38.7
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-13 81.3 87 46.0
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.1e-13 81.3 85 47.1
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.1e-13 81.3 91 45.1
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 5.7e-13 79.0 147 36.7
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 7.4e-13 78.6 136 39.0
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 7.4e-13 78.6 121 41.3
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 9.7e-13 78.2 135 38.5
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.3e-12 77.8 138 37.7
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 2.8e-12 76.6 122 40.2
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 3.7e-12 76.3 145 37.9
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 3.7e-12 76.3 126 38.1
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 4.8e-12 75.9 143 38.5
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 4.8e-12 75.9 143 37.1
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 4.8e-12 75.9 143 37.1
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.8e-12 75.9 226 28.8
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 6.3e-12 75.5 141 36.2
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 8.2e-12 75.1 143 35.7
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 8.2e-12 75.1 143 35.7
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-11 74.7 130 36.9
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.1e-11 74.7 130 36.9
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 3.1e-11 73.2 143 35.7
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 3.1e-11 73.2 143 35.7
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 4.1e-11 72.8 134 36.6
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 5.3e-11 72.4 123 39.8
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 2.0e-10 70.5 135 34.8
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 2.0e-10 70.5 134 35.8
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.0e-10 70.5 143 35.7
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.0e-09 68.2 133 37.6
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.7e-09 67.4 243 28.4
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 5.0e-09 65.9 135 34.8
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 5.0e-09 65.9 135 34.8
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.1e-08 64.7 237 28.3
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 2.1e-07 60.5 87 41.4
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.6e-07 59.7 133 36.8
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 7.9e-07 58.5 154 32.5
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.8e-06 57.4 92 33.7
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 5.1e-06 55.8 84 39.3


User provided reference genes

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