Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 8.4e-224 780.0 388 100.0
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.3e-168 596.7 367 85.0
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 8.0e-126 454.5 472 55.5
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 9.5e-119 431.0 341 65.7
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 2.3e-96 356.7 457 47.3
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 6.6e-96 355.1 433 46.0
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 2.1e-94 350.1 444 46.6
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 1.8e-93 347.1 433 46.9
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 6.9e-93 345.1 382 49.7
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.5e-92 344.0 430 45.6
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 5.8e-92 342.0 438 45.7
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 5.8e-92 342.0 365 51.8
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.9e-92 341.3 435 45.5
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 2.2e-91 340.1 442 45.5
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.9e-91 339.7 431 44.3
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 3.8e-91 339.3 431 44.3
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 8.4e-91 338.2 436 45.4
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 1.1e-90 337.8 282 59.2
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 1.9e-90 337.0 416 45.7
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 2.4e-90 336.7 443 44.2
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 9.3e-90 334.7 369 48.2
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 1.2e-89 334.3 368 50.0
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 2.1e-89 333.6 437 44.9
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 7.9e-89 331.6 437 44.6
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 7.9e-89 331.6 436 45.0
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.3e-88 330.9 372 49.2
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.1e-87 327.8 434 43.3
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.1e-87 327.8 372 49.2
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.1e-87 327.8 431 44.5
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 1.5e-87 327.4 278 57.6
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 2.5e-87 326.6 435 43.4
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.5e-87 326.6 451 43.9
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 2.8e-86 323.2 433 43.9
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 3.7e-86 322.8 392 45.7
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 4.8e-86 322.4 433 42.7
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 6.2e-86 322.0 441 42.9
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 8.1e-86 321.6 434 43.3
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 8.1e-86 321.6 422 44.3
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 1.8e-85 320.5 434 42.6
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 2.4e-85 320.1 440 41.1
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.1e-85 319.7 385 46.2
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 5.3e-85 318.9 381 48.0
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.3e-83 314.3 447 43.4
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.7e-83 313.9 424 42.2
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 2.9e-83 313.2 446 40.8
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.9e-83 313.2 448 41.7
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 2.9e-83 313.2 276 53.6
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 2.9e-83 313.2 438 42.5
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 8.4e-83 311.6 448 42.0
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 8.4e-83 311.6 356 48.6
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.9e-82 310.5 425 42.6
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 2.5e-82 310.1 447 42.5
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 2.5e-82 310.1 413 43.1
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 3.2e-82 309.7 431 42.0
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 9.3e-82 308.1 280 55.0
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 1.6e-81 307.4 279 54.5
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 2.7e-81 306.6 436 42.0
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 4.6e-81 305.8 417 42.2
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 6.0e-81 305.4 444 41.9
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.0e-80 304.7 440 41.1
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 1.0e-80 304.7 281 54.1
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 1.8e-80 303.9 434 41.0
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.8e-80 303.9 329 48.3
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 2.5e-79 300.1 440 40.5
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 3.3e-79 299.7 442 41.0
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 2.1e-78 297.0 474 39.7
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 6.2e-78 295.4 304 50.3
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 1.4e-77 294.3 282 52.1
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 1.8e-77 293.9 452 40.9
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 2.4e-77 293.5 447 40.5
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 9.0e-77 291.6 371 44.5
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.3e-75 287.7 438 40.4
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 8.4e-75 285.0 478 37.9
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.4e-74 284.3 435 39.1
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.9e-74 283.9 435 39.1
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 2.5e-74 283.5 441 40.4
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 3.2e-74 283.1 436 39.9
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 1.0e-72 278.1 435 39.5
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 5.1e-72 275.8 422 39.8
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 6.7e-72 275.4 430 41.4
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 1.9e-71 273.9 452 36.5
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 4.3e-71 272.7 362 43.6
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 4.3e-71 272.7 362 43.6
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 4.3e-71 272.7 437 40.5
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 9.7e-71 271.6 271 50.9
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.6e-70 270.8 418 40.7
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.8e-70 270.0 375 40.5
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.4e-69 266.9 326 44.8
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 3.1e-69 266.5 336 47.0
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 3.1e-69 266.5 279 47.7
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 3.1e-69 266.5 295 47.1
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 9.0e-69 265.0 449 37.2
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 1.3e-67 261.2 423 40.9
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 2.2e-67 260.4 336 46.4
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 2.2e-67 260.4 336 46.4
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 1.6e-65 254.2 453 36.6
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 2.7e-65 253.4 426 39.7
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.7e-65 253.4 445 37.1
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 4.3e-63 246.1 415 38.3
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 9.7e-63 245.0 445 35.1
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.3e-62 244.6 460 35.0
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 6.3e-62 242.3 308 41.6
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 1.1e-61 241.5 397 40.6
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 4.1e-61 239.6 295 47.1
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 9.1e-61 238.4 308 41.9
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 1.2e-60 238.0 344 41.0
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 1.2e-60 238.0 375 40.5
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 2.6e-60 236.9 338 39.3
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 3.4e-60 236.5 439 36.4
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.8e-56 224.2 326 40.5
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 4.4e-55 219.5 407 36.1
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 5.7e-55 219.2 354 39.8
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 1.7e-54 217.6 219 52.5
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 2.0e-52 210.7 319 39.8
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.9e-51 206.8 196 54.6
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 1.4e-48 198.0 220 48.2
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.1e-47 194.9 273 38.5
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 5.3e-45 186.0 154 57.8
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 7.7e-44 182.2 346 33.2
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.2e-41 174.9 283 37.1
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 6.1e-41 172.6 316 34.8
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 8.3e-38 162.2 315 31.4
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 3.5e-36 156.8 300 36.3
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 5.7e-31 139.4 200 40.0
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 7.0e-29 132.5 249 35.7
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 5.9e-28 129.4 311 30.5
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 2.9e-27 127.1 122 50.8
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 4.1e-21 106.7 90 56.7
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 1.7e-14 84.7 94 46.8
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 3.2e-13 80.5 66 50.0
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 3.0e-11 73.9 110 34.5
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 1.1e-10 72.0 67 50.7


User provided reference genes

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