Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.6e-38 162.2 77 100.0
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.9e-31 138.7 110 67.3
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.3e-30 136.0 68 89.7
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.4e-29 131.7 68 88.2
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 5.5e-26 120.6 83 72.3
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 1.2e-25 119.4 67 82.1
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 4.6e-25 117.5 67 80.6
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 4.6e-25 117.5 67 80.6
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.0e-24 116.3 67 80.6
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.8e-24 115.5 67 79.1
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.8e-24 115.5 67 79.1
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 3.0e-24 114.8 67 79.1
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.9e-24 114.4 69 73.9
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.9e-24 114.4 67 76.1
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 8.7e-24 113.2 68 77.9
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 1.1e-23 112.8 68 76.5
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 1.5e-23 112.5 71 74.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.5e-23 112.5 67 77.6
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.5e-23 112.5 68 77.9
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.9e-23 112.1 68 76.5
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.9e-23 112.1 68 76.5
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 1.9e-23 112.1 67 74.6
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 2.5e-23 111.7 71 73.2
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.5e-23 111.7 68 76.5
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 4.3e-23 110.9 68 75.0
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 4.3e-23 110.9 68 76.5
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 4.3e-23 110.9 67 76.1
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 7.4e-23 110.2 67 76.1
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 7.4e-23 110.2 67 76.1
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 7.4e-23 110.2 67 76.1
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 7.4e-23 110.2 66 75.8
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.6e-22 109.0 65 75.4
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.6e-22 109.0 70 71.4
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.6e-22 109.0 71 71.8
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 2.1e-22 108.6 68 73.5
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 2.1e-22 108.6 66 75.8
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 2.1e-22 108.6 68 75.0
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.1e-22 108.6 63 74.6
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.8e-22 108.2 68 75.0
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.8e-22 108.2 68 75.0
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 2.8e-22 108.2 68 73.5
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 2.8e-22 108.2 69 72.5
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 2.8e-22 108.2 75 68.0
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 4.8e-22 107.5 68 75.0
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.8e-22 107.5 67 70.1
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 4.8e-22 107.5 66 74.2
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 4.8e-22 107.5 63 73.0
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 4.8e-22 107.5 63 73.0
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 4.8e-22 107.5 67 74.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 4.8e-22 107.5 68 72.1
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 6.3e-22 107.1 68 72.1
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 8.2e-22 106.7 66 74.2
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 8.2e-22 106.7 70 71.4
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 8.2e-22 106.7 70 71.4
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 8.2e-22 106.7 65 73.8
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 8.2e-22 106.7 68 73.5
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.1e-21 106.3 66 74.2
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.1e-21 106.3 68 76.5
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.1e-21 106.3 62 77.4
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.1e-21 106.3 62 77.4
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.1e-21 106.3 70 70.0
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.4e-21 105.9 68 70.6
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.4e-21 105.9 62 77.4
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.4e-21 105.9 62 77.4
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.4e-21 105.9 62 77.4
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.4e-21 105.9 61 78.7
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.4e-21 105.9 61 78.7
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.4e-21 105.9 68 72.1
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.8e-21 105.5 70 70.0
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 3.1e-21 104.8 76 67.1
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 3.1e-21 104.8 71 71.8
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 4.1e-21 104.4 59 78.0
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.1e-21 104.4 62 72.6
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 4.1e-21 104.4 62 74.2
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 5.3e-21 104.0 67 68.7
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 6.9e-21 103.6 63 74.6
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 9.0e-21 103.2 76 65.8
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 9.0e-21 103.2 68 67.6
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.2e-20 102.8 68 70.6
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.5e-20 102.4 61 75.4
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.0e-20 102.1 68 69.1
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 2.0e-20 102.1 68 69.1
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.0e-20 102.1 68 69.1
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 3.4e-20 101.3 77 64.9
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.4e-20 101.3 56 80.4
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 4.5e-20 100.9 73 65.8
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 5.9e-20 100.5 60 73.3
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 7.6e-20 100.1 60 73.3
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 1.3e-19 99.4 62 69.4
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.7e-19 99.0 68 66.2
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.7e-19 99.0 67 70.1
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.7e-19 99.0 59 72.9
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 2.2e-19 98.6 62 71.0
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.9e-19 98.2 66 71.2
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 3.8e-19 97.8 57 75.4
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 3.8e-19 97.8 57 75.4
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 5.0e-19 97.4 71 60.6
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 5.0e-19 97.4 73 63.0
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 5.0e-19 97.4 68 70.6
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 8.5e-19 96.7 67 67.2
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 8.5e-19 96.7 51 80.4
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 8.5e-19 96.7 50 84.0
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 8.5e-19 96.7 69 65.2
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 8.5e-19 96.7 68 67.6
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.1e-18 96.3 50 84.0
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.4e-18 95.9 68 67.6
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.9e-18 95.5 83 57.8
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.9e-18 95.5 67 68.7
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 4.2e-18 94.4 67 65.7
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 5.5e-18 94.0 64 68.8
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 5.5e-18 94.0 64 68.8
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 5.5e-18 94.0 71 64.8
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 5.5e-18 94.0 71 64.8
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 5.5e-18 94.0 70 62.9
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 7.2e-18 93.6 66 68.2
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 7.2e-18 93.6 51 82.4
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 9.3e-18 93.2 70 61.4
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 9.3e-18 93.2 67 67.2
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 1.2e-17 92.8 67 65.7
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.6e-17 92.4 67 65.7
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.1e-17 92.0 64 67.2
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 2.7e-17 91.7 58 77.6
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 3.6e-17 91.3 63 68.3
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 3.6e-17 91.3 68 64.7
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 6.1e-17 90.5 97 49.5
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.0e-16 89.7 45 86.7
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.0e-16 89.7 81 58.0
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.0e-16 88.2 68 63.2
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 3.0e-16 88.2 64 64.1
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 6.7e-16 87.0 71 62.0
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 1.1e-15 86.3 59 61.0
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.1e-15 86.3 67 64.2
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.9e-15 85.5 67 61.2
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 4.3e-15 84.3 73 58.9
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 7.4e-15 83.6 60 58.3
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.3e-14 82.8 68 63.2
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.6e-14 82.4 56 67.9
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 3.7e-14 81.3 68 61.8
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 6.9e-13 77.0 55 63.6
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 6.9e-13 77.0 38 81.6
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 9.1e-13 76.6 66 56.1
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 9.1e-13 76.6 68 60.3
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.2e-12 76.3 68 58.8
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 3.4e-12 74.7 57 59.6
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 4.5e-12 74.3 65 53.8
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 5.9e-12 73.9 42 76.2
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 2.9e-11 71.6 80 47.5
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 6.5e-11 70.5 36 80.6
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 8.5e-11 70.1 35 82.9
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 1.1e-10 69.7 51 52.9
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 1.4e-10 69.3 81 46.9
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 4.2e-10 67.8 51 66.7
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 3.6e-09 64.7 61 47.5
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 2.3e-08 62.0 45 68.9
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 3.9e-08 61.2 46 58.7
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 4.4e-07 57.8 55 52.7


User provided reference genes

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