Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.4e-139 498.8 247 100.0
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.3e-132 476.5 248 95.6
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 6.9e-115 417.5 250 83.2
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 6.5e-113 411.0 246 82.1
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.5e-104 382.5 247 76.5
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 2.6e-98 362.5 247 72.5
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 8.5e-97 357.5 247 73.7
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 1.1e-96 357.1 247 71.7
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 1.5e-96 356.7 247 72.5
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 1.5e-96 356.7 247 71.7
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 3.2e-96 355.5 248 71.4
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 4.2e-96 355.1 247 71.7
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 4.2e-96 355.1 247 71.7
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 1.2e-95 353.6 247 72.1
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.1e-95 352.8 248 69.8
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 2.1e-95 352.8 247 71.7
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 2.7e-95 352.4 247 70.9
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 4.7e-95 351.7 251 71.3
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 6.1e-95 351.3 247 70.4
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 8.0e-95 350.9 248 71.0
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 8.0e-95 350.9 246 70.3
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.0e-94 349.0 251 70.1
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 3.0e-94 349.0 247 70.0
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 3.0e-94 349.0 253 70.4
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 4.0e-94 348.6 247 70.4
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 4.0e-94 348.6 247 70.0
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 5.2e-94 348.2 247 70.0
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 6.8e-94 347.8 247 70.9
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 1.2e-93 347.1 252 69.8
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.6e-93 345.9 247 69.6
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 5.7e-93 344.7 247 68.8
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 5.7e-93 344.7 248 69.8
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 5.7e-93 344.7 248 69.8
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 7.5e-93 344.4 249 70.7
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 1.3e-92 343.6 247 68.8
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 2.2e-92 342.8 249 69.9
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 4.8e-92 341.7 247 68.4
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 6.3e-92 341.3 220 75.0
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 8.3e-92 340.9 247 68.8
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.1e-91 340.5 244 70.1
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 1.1e-91 340.5 247 68.0
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 1.4e-91 340.1 247 70.0
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 1.4e-91 340.1 247 69.6
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 1.8e-91 339.7 248 69.0
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 1.8e-91 339.7 248 69.0
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.4e-91 339.3 247 67.6
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 2.4e-91 339.3 247 68.8
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 3.1e-91 339.0 248 68.5
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.1e-91 339.0 248 68.5
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 5.4e-91 338.2 251 66.9
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 9.1e-91 337.4 248 67.7
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 9.1e-91 337.4 248 67.3
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 9.1e-91 337.4 247 66.4
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 1.2e-90 337.0 247 68.0
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 1.6e-90 336.7 248 66.9
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.6e-90 336.7 247 68.4
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.6e-90 336.7 247 68.4
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 2.0e-90 336.3 248 67.3
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 2.0e-90 336.3 248 67.3
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 2.0e-90 336.3 248 67.3
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.0e-90 336.3 251 66.5
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 5.9e-90 334.7 247 66.0
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 5.9e-90 334.7 249 67.9
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 7.7e-90 334.3 247 66.8
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.0e-89 334.0 247 66.4
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 2.2e-89 332.8 229 71.6
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 5.0e-89 331.6 247 67.2
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 8.5e-89 330.9 238 68.1
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 1.9e-88 329.7 247 65.6
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 3.2e-88 328.9 248 67.7
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 3.2e-88 328.9 253 65.2
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 2.7e-87 325.9 247 67.6
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.6e-87 325.5 248 66.1
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 8.0e-87 324.3 247 66.4
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 1.8e-86 323.2 247 67.2
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 5.2e-86 321.6 247 66.8
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 4.4e-85 318.5 248 66.5
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 9.1e-83 310.8 254 62.6
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 1.6e-82 310.1 257 60.7
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 1.7e-81 306.6 244 63.1
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 5.0e-81 305.1 247 63.6
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 7.2e-80 301.2 251 61.8
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 1.6e-79 300.1 220 67.3
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 2.1e-79 299.7 247 64.0
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 2.8e-79 299.3 247 63.2
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 6.1e-79 298.1 219 65.8
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 4.0e-78 295.4 217 64.1
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.2e-77 293.9 224 64.3
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 1.3e-76 290.4 220 64.1
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 3.7e-76 288.9 220 63.6
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 4.9e-76 288.5 221 63.3
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 6.3e-76 288.1 249 61.8
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 3.2e-75 285.8 220 63.6
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 4.1e-75 285.4 220 63.2
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.2e-74 283.9 217 64.1
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 4.6e-74 282.0 220 63.2
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 1.1e-72 277.3 238 60.1
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 8.0e-71 271.2 217 60.4
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 5.8e-69 265.0 253 59.3
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 4.9e-68 261.9 218 56.4
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.9e-68 261.9 217 58.5
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 3.2e-67 259.2 217 56.2
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 3.2e-67 259.2 217 56.2
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.2e-67 259.2 219 56.6
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 1.6e-66 256.9 200 62.5
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.0e-66 256.5 217 56.7
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.7e-66 256.1 217 55.8
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 7.8e-66 254.6 217 55.8
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 3.9e-65 252.3 217 54.4
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 6.6e-65 251.5 219 54.8
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 6.6e-65 251.5 219 54.8
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 5.6e-64 248.4 217 54.4
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 6.2e-63 245.0 221 52.5
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 5.2e-62 241.9 192 62.0
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 1.2e-61 240.7 220 52.7
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 4.4e-61 238.8 220 51.8
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 5.8e-61 238.4 220 52.7
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 9.8e-61 237.7 222 51.8
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-60 237.3 220 51.8
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.7e-60 236.9 219 52.5
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 2.9e-60 236.1 215 57.2
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 2.9e-60 236.1 220 51.8
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 6.4e-60 235.0 219 52.1
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.4e-60 235.0 219 52.1
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.9e-59 233.4 216 54.2
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 2.4e-59 233.0 215 54.4
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 9.2e-59 231.1 219 56.6
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.2e-58 230.7 199 59.8
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 1.0e-57 227.6 217 52.5
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.8e-55 219.5 219 52.1
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 1.4e-54 217.2 197 55.3
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.8e-54 216.9 138 75.4
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 8.9e-54 214.5 183 55.2
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 1.5e-53 213.8 218 49.5
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 4.6e-50 202.2 218 49.5
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 6.0e-50 201.8 218 49.5
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 4.3e-48 195.7 130 73.1
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 2.1e-47 193.4 154 60.4
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.4e-46 189.9 185 55.1
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 4.4e-45 185.7 169 52.1
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 4.9e-44 182.2 145 64.8
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 1.6e-42 177.2 123 65.9
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 1.3e-41 174.1 222 44.1
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 2.3e-41 173.3 231 45.5
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 6.2e-39 165.2 360 33.9
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 8.4e-36 154.8 202 47.0
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 7.1e-35 151.8 130 63.1
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 3.0e-33 146.4 185 47.6
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 3.9e-33 146.0 120 55.0
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 2.1e-31 140.2 213 39.4
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 1.1e-30 137.9 248 36.3
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.7e-28 130.6 106 58.5
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.1e-23 111.7 113 46.0
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 3.1e-22 109.8 90 63.3
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 1.0e-20 104.8 137 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 1.3e-20 104.4 178 38.8
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 8.4e-20 101.7 69 75.4
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-17 92.4 65 69.2
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.9e-16 90.5 95 53.7
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 8.2e-15 85.1 169 32.5
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 1.5e-13 80.9 153 35.9
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.5e-13 80.9 59 64.4
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 5.9e-13 79.0 66 57.6
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 6.5e-12 75.5 83 44.6
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 1.6e-10 70.9 61 60.7
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 3.5e-10 69.7 66 53.0
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 5.1e-09 65.9 67 50.7
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 5.7e-08 62.4 75 46.7
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 3.7e-07 59.7 51 62.7


User provided reference genes

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