Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019868 Chenopodium quinoa HOM05D002255 ORTHO05D002288 3.1e-96 355.1 183 100.0
AUR62010866 Chenopodium quinoa HOM05D002255 ORTHO05D002288 6.1e-76 287.7 161 93.2
EL10Ac5g12942 Beta vulgaris HOM05D002255 ORTHO05D002288 3.9e-70 268.5 179 78.8
Ah.12g052770 Amaranthus hybridus HOM05D002255 ORTHO05D002288 1.6e-63 246.5 161 80.1
AUR62022502 Chenopodium quinoa HOM05D002255 ORTHO05D002288 7.8e-39 164.5 100 85.0
Sc01g0010380 Simmondsia chinensis HOM05D002255 ORTHO05D002288 4.6e-31 138.7 190 46.8
Nn3g18976 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.1e-29 134.0 176 40.9
Nn1g00261 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.6e-28 130.2 176 42.6
Actinidia22177 Actinidia chinensis HOM05D002255 ORTHO05D002288 2.8e-28 129.4 169 44.4
QL02p029860 Quercus lobata HOM05D002255 ORTHO05D002288 9.0e-27 124.4 187 39.6
Manes.02G008000 Manihot esculenta HOM05D002255 ORTHO05D002288 1.5e-26 123.6 175 42.9
CANSAT21G1974 Cannabis sativa HOM05D002255 ORTHO05D002288 2.0e-26 123.2 183 39.9
Sabra01G0065200 Salix brachista HOM05D002255 ORTHO05D002288 2.6e-26 122.9 187 40.6
Prupe.5G123000 Prunus persica HOM05D002255 ORTHO05D002288 3.4e-26 122.5 175 44.6
Duzib205G1099 Durio zibethinus HOM05D002255 ORTHO05D002288 4.5e-26 122.1 181 40.3
Ciclev10023315m.g Citrus clementina HOM05D002255 ORTHO05D002288 7.6e-26 121.3 182 40.7
Eucgr.E00885 Eucalyptus grandis HOM05D002255 ORTHO05D002288 7.6e-26 121.3 183 40.4
Lj4g0026828 Lotus japonicus HOM05D002255 ORTHO05D002288 7.6e-26 121.3 175 42.3
Peaxi162Scf00102g01853 Petunia axillaris HOM05D002255 ORTHO05D002288 7.6e-26 121.3 152 43.4
COL.COLO4_10731 Corchorus olitorius HOM05D002255 ORTHO05D002288 9.9e-26 120.9 181 42.0
Hma1.2p1_0359F.1_g135100 Hydrangea macrophylla HOM05D002255 ORTHO05D002288 9.9e-26 120.9 175 43.4
CSS0015495 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 1.7e-25 120.2 159 41.5
Cfa011979 Carpinus fangiana HOM05D002255 ORTHO05D002288 1.7e-25 120.2 179 41.3
CSS0048832 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 2.9e-25 119.4 168 41.7
Potri.001G089000 Populus trichocarpa HOM05D002255 ORTHO05D002288 2.9e-25 119.4 187 39.6
RcHm_v2.0_Chr7g0194121 Rosa chinensis HOM05D002255 ORTHO05D002288 2.9e-25 119.4 178 41.6
Thecc.03G301000 Theobroma cacao HOM05D002255 ORTHO05D002288 2.9e-25 119.4 182 39.6
FAN18G0680 Fragaria x ananassa HOM05D002255 ORTHO05D002288 1.1e-24 117.5 156 44.2
TPR.G3449 Trifolium pratense HOM05D002255 ORTHO05D002288 1.4e-24 117.1 175 39.4
Gohir.A09G189700 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.9e-24 116.7 185 36.8
Phvul.002G300100 Phaseolus vulgaris HOM05D002255 ORTHO05D002288 1.9e-24 116.7 168 39.9
Gorai.006G206900 Gossypium raimondii HOM05D002255 ORTHO05D002288 2.4e-24 116.3 199 35.7
Gohir.D09G184400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 5.5e-24 115.2 199 35.7
Atru.chr9.1928 Acer truncatum HOM05D002255 ORTHO05D002288 9.3e-24 114.4 197 37.6
Lj2P163T54 Lonicera japonica HOM05D002255 ORTHO05D002288 9.3e-24 114.4 147 44.2
Lalb_Chr05g0224011 Lupinus albus HOM05D002255 ORTHO05D002288 1.2e-23 114.0 165 41.2
Cpa.g.sc634.4 Carica papaya HOM05D002255 ORTHO05D002288 2.1e-23 113.2 163 38.0
Medtr8g099655 Medicago truncatula HOM05D002255 ORTHO05D002288 2.7e-23 112.8 198 37.9
VMungo0251G1524 Vigna mungo HOM05D002255 ORTHO05D002288 2.7e-23 112.8 171 38.6
Gohir.D03G084400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 3.5e-23 112.5 161 41.0
Gorai.003G078200 Gossypium raimondii HOM05D002255 ORTHO05D002288 3.5e-23 112.5 161 41.0
CiPaw.11G118700 Carya illinoinensis HOM05D002255 ORTHO05D002288 4.6e-23 112.1 171 39.2
FvH4_5g04950 Fragaria vesca HOM05D002255 ORTHO05D002288 4.6e-23 112.1 175 38.9
FAN13G3015 Fragaria x ananassa HOM05D002255 ORTHO05D002288 4.6e-23 112.1 175 38.9
Psat7g024880 Pisum sativum HOM05D002255 ORTHO05D002288 4.6e-23 112.1 176 39.8
Glyma.08G024400 Glycine max HOM05D002255 ORTHO05D002288 6.0e-23 111.7 161 38.5
FAN18G0019 Fragaria x ananassa HOM05D002255 ORTHO05D002288 7.9e-23 111.3 175 38.9
Haze_09094 Corylus avellana HOM05D002255 ORTHO05D002288 1.0e-22 110.9 144 41.0
CsaV3_4G006750 Cucumis sativus L. HOM05D002255 ORTHO05D002288 1.0e-22 110.9 160 42.5
Gohir.A02G099300 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.0e-22 110.9 161 40.4
Ca_17465_v3 Cicer arietinum L. HOM05D002255 ORTHO05D002288 3.9e-22 109.0 188 37.8
Glyma.05G218300 Glycine max HOM05D002255 ORTHO05D002288 3.9e-22 109.0 165 40.0
MBI06_g13416_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 3.9e-22 109.0 175 38.9
PGSC0003DMG400005843 Solanum tuberosum HOM05D002255 ORTHO05D002288 1.1e-21 107.5 152 40.1
PGR042G2287 Punica granatum HOM05D002255 ORTHO05D002288 1.5e-21 107.1 188 39.4
FAN08G1358 Fragaria x ananassa HOM05D002255 ORTHO05D002288 1.9e-21 106.7 175 38.9
TWI60G0014 Tripterygium wilfordii HOM05D002255 ORTHO05D002288 2.5e-21 106.3 177 40.7
ClCG07G011470 Citrullus lanatus HOM05D002255 ORTHO05D002288 7.4e-21 104.8 161 40.4
PSO384G0536 Papaver somniferum HOM05D002255 ORTHO05D002288 7.4e-21 104.8 192 37.0
MELO3C016274.2 Cucumis melo HOM05D002255 ORTHO05D002288 1.3e-20 104.0 162 42.0
CiPaw.12G081200 Carya illinoinensis HOM05D002255 ORTHO05D002288 2.1e-20 103.2 187 35.3
Solyc08g008360.2 Solanum lycopersicum HOM05D002255 ORTHO05D002288 2.1e-20 103.2 152 38.8
Sopen08g004240 Solanum pennellii HOM05D002255 ORTHO05D002288 2.1e-20 103.2 154 38.3
ECA246G0612 Erigeron canadensis HOM05D002255 ORTHO05D002288 3.7e-20 102.4 151 41.7
MD06G1110100 Malus domestica HOM05D002255 ORTHO05D002288 3.7e-20 102.4 249 34.1
HanXRQChr17g0534981 Helianthus annuus HOM05D002255 ORTHO05D002288 6.2e-20 101.7 145 38.6
Sed0012868 Sechium edule HOM05D002255 ORTHO05D002288 1.4e-19 100.5 159 39.6
DCAR_006522 Daucus carota HOM05D002255 ORTHO05D002288 6.9e-19 98.2 254 31.1
ATR0602G057 Amborella trichopoda HOM05D002255 ORTHO05D002288 4.5e-18 95.5 170 35.3
Lsat_1_v5_gn_3_11301 Lactuca sativa HOM05D002255 ORTHO05D002288 4.5e-18 95.5 181 34.3
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 2.9e-17 92.8 164 35.4
MD14G1131100 Malus domestica HOM05D002255 ORTHO05D002288 4.9e-17 92.0 221 34.4
Nitab4.5_0002231g0100 Nicotiana tabacum HOM05D002255 ORTHO05D002288 4.9e-17 92.0 149 35.6
SEGI_25160 Sequoiadendron giganteum HOM05D002255 ORTHO05D002288 7.1e-16 88.2 174 32.2
Nitab4.5_0007367g0010 Nicotiana tabacum HOM05D002255 ORTHO05D002288 9.3e-16 87.8 161 34.8
THA.LOC104813045 Tarenaya hassleriana HOM05D012458 ORTHO05D014337 1.6e-15 87.0 164 35.4
Aqoxy7G00071 Aquilegia oxysepala HOM05D002255 ORTHO05D002288 2.7e-15 86.3 284 25.4
Dinv37512 Davidia involucrata HOM05D002255 ORTHO05D002288 5.1e-14 82.0 156 34.6
MBI12_g16192_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 5.7e-13 78.6 169 32.0
ATR0078G028 Amborella trichopoda HOM05D002255 ORTHO05D002288 1.3e-12 77.4 184 28.3
Nn1g00427 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.3e-12 77.4 166 31.3
Ciclev10022281m.g Citrus clementina HOM05D002255 ORTHO05D002288 1.1e-11 74.3 175 31.4
Rhsim02G0246900 Rhododendron simsii HOM05D002255 ORTHO05D002288 1.4e-11 73.9 95 46.3
COL.COLO4_06208 Corchorus olitorius HOM05D002255 ORTHO05D002288 1.8e-11 73.6 170 32.9
BcaC07g42619 Brassica carinata HOM05D002255 ORTHO05D002288 3.1e-11 72.8 183 28.4
Lj3g0024476 Lotus japonicus HOM05D002255 ORTHO05D002288 3.1e-11 72.8 177 28.2
MBI04_g15572_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 3.1e-11 72.8 175 31.4
TPR.G19840 Trifolium pratense HOM05D002255 ORTHO05D002288 4.1e-11 72.4 187 32.1
arahy.Tifrunner.gnm1.ann1.I8323W Arachis hypogaea HOM05D002255 ORTHO05D002288 6.9e-11 71.6 173 30.6
Glyma.07G050100 Glycine max HOM05D002255 ORTHO05D002288 6.9e-11 71.6 195 29.7
Glyma.16G018800 Glycine max HOM05D002255 ORTHO05D002288 6.9e-11 71.6 197 27.9
AT3G61920 Arabidopsis thaliana HOM05D002255 ORTHO05D002288 9.0e-11 71.2 157 29.3
Ah.05g178990 Amaranthus hybridus HOM05D002255 ORTHO05D002288 1.2e-10 70.9 181 27.6
AL5G44520 Arabidopsis lyrata HOM05D002255 ORTHO05D002288 1.2e-10 70.9 158 31.0
Haze_15727 Corylus avellana HOM05D002255 ORTHO05D002288 1.2e-10 70.9 184 30.4
TAR375G0553 Trochodendron aralioides HOM05D002255 ORTHO05D002288 1.2e-10 70.9 182 30.8
VMungo0331G1755 Vigna mungo HOM05D002255 ORTHO05D002288 1.2e-10 70.9 193 29.5
arahy.Tifrunner.gnm1.ann1.WLQ804 Arachis hypogaea HOM05D002255 ORTHO05D002288 2.0e-10 70.1 187 29.4
Cpa.g.sc141.2 Carica papaya HOM05D002255 ORTHO05D002288 2.6e-10 69.7 152 32.2
SalBow5G5501 Salvia bowleyana HOM05D002255 ORTHO05D002288 2.6e-10 69.7 170 32.9
TWI14G0548 Tripterygium wilfordii HOM05D002255 ORTHO05D002288 2.6e-10 69.7 177 28.8
BraA09t40813Z Brassica rapa HOM05D002255 ORTHO05D002288 3.4e-10 69.3 184 27.7
Duzib138G1476 Durio zibethinus HOM05D002255 ORTHO05D002288 3.4e-10 69.3 170 30.6
Thecc.01G334100 Theobroma cacao HOM05D002255 ORTHO05D002288 3.4e-10 69.3 176 30.1
BcaC07g40685 Brassica carinata HOM05D002255 ORTHO05D002288 5.9e-10 68.6 183 30.1
C08p36850 Brassica napus HOM05D002255 ORTHO05D002288 5.9e-10 68.6 183 30.1
BolC8t51264H Brassica oleracea HOM05D002255 ORTHO05D002288 5.9e-10 68.6 183 30.1
QL02p029867 Quercus lobata HOM05D002255 ORTHO05D002288 5.9e-10 68.6 157 30.6
A09p53990 Brassica napus HOM05D002255 ORTHO05D002288 7.7e-10 68.2 184 27.7
TAR374G1498 Trochodendron aralioides HOM05D002255 ORTHO05D002288 7.7e-10 68.2 166 30.7
CsaV3_4G005840 Cucumis sativus L. HOM05D002255 ORTHO05D002288 1.0e-09 67.8 166 28.9
Sed0000936 Sechium edule HOM05D002255 ORTHO05D002288 1.0e-09 67.8 186 28.0
Gorai.004G044300 Gossypium raimondii HOM05D002255 ORTHO05D002288 1.3e-09 67.4 181 28.7
Manes.05G017000 Manihot esculenta HOM05D002255 ORTHO05D002288 1.3e-09 67.4 177 30.5
Potri.014G104900 Populus trichocarpa HOM05D002255 ORTHO05D002288 1.3e-09 67.4 188 28.7
Cfa003741 Carpinus fangiana HOM05D002255 ORTHO05D002288 1.7e-09 67.0 185 29.7
Gohir.D08G045400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.7e-09 67.0 181 28.7
VMungo1309G2654 Vigna mungo HOM05D002255 ORTHO05D002288 2.2e-09 66.6 171 30.4
Carub.0005s2868 Capsella rubella HOM05D002255 ORTHO05D002288 2.9e-09 66.2 186 25.8
CDE12G0944 Ceratophyllum demersum HOM05D002255 ORTHO05D002288 2.9e-09 66.2 164 28.0
RcHm_v2.0_Chr1g0361011 Rosa chinensis HOM05D002255 ORTHO05D002288 2.9e-09 66.2 163 29.4
CANSAT56G1904 Cannabis sativa HOM05D002255 ORTHO05D002288 3.8e-09 65.9 212 25.9
CANSAT56G3209 Cannabis sativa HOM05D002255 ORTHO05D002288 3.8e-09 65.9 212 25.9
Oeu064420.1 Olea europaea HOM05D002255 ORTHO05D002288 3.8e-09 65.9 160 28.1
Oeu022736.1 Olea europaea HOM05D002255 ORTHO05D002288 5.0e-09 65.5 159 28.9
QL02p029889 Quercus lobata HOM05D002255 ORTHO05D002288 5.0e-09 65.5 135 31.9
Sabra14G0077300 Salix brachista HOM05D002255 ORTHO05D002288 5.0e-09 65.5 189 29.1
CARHR172280 Cardamine hirsuta HOM05D002255 ORTHO05D002288 6.5e-09 65.1 159 32.1
Thhalv10006365m.g Eutrema salsugineum HOM05D002255 ORTHO05D002288 8.5e-09 64.7 159 27.0
Gohir.A11G100600 Gossypium hirsutum HOM05D002255 ORTHO05D002288 8.5e-09 64.7 199 28.6
Gorai.007G112600 Gossypium raimondii HOM05D002255 ORTHO05D002288 8.5e-09 64.7 199 28.6
PSO170G1572 Papaver somniferum HOM05D002255 ORTHO05D002288 8.5e-09 64.7 179 27.9
QL08p047076 Quercus lobata HOM05D002255 ORTHO05D002288 8.5e-09 64.7 180 27.8
Aa31LG10G15930 Aethionema arabicum HOM05D002255 ORTHO05D002288 1.1e-08 64.3 194 26.3
Glyma.19G259600 Glycine max HOM05D002255 ORTHO05D002288 1.1e-08 64.3 176 30.1
CiPaw.01G082000 Carya illinoinensis HOM05D002255 ORTHO05D002288 1.4e-08 63.9 172 27.9
MD01G1088400 Malus domestica HOM05D002255 ORTHO05D002288 1.4e-08 63.9 162 30.2
ClCG07G008260 Citrullus lanatus HOM05D002255 ORTHO05D002288 2.5e-08 63.2 192 26.6
FAN10G4169 Fragaria x ananassa HOM05D002255 ORTHO05D002288 3.2e-08 62.8 163 30.7
Gohir.A09G188100 Gossypium hirsutum HOM05D002255 ORTHO05D002288 3.2e-08 62.8 153 26.8
Lj1g0027887 Lotus japonicus HOM05D002255 ORTHO05D002288 3.2e-08 62.8 181 29.8
Sc23g0001820 Simmondsia chinensis HOM05D002255 ORTHO05D002288 3.2e-08 62.8 165 28.5
Solyc10g005020.3 Solanum lycopersicum HOM05D002255 ORTHO05D002288 3.2e-08 62.8 151 27.8
Gohir.D09G182900 Gossypium hirsutum HOM05D002255 ORTHO05D002288 4.2e-08 62.4 172 25.6
Gorai.006G205200 Gossypium raimondii HOM05D002255 ORTHO05D002288 4.2e-08 62.4 172 25.6
PSO063G2959 Papaver somniferum HOM05D002255 ORTHO05D002288 4.2e-08 62.4 181 26.5
Sopen10g001030 Solanum pennellii HOM05D002255 ORTHO05D002288 4.2e-08 62.4 151 27.8
HPP92_021080 Vanilla planifolia HOM05D002255 ORTHO05D002288 4.2e-08 62.4 126 33.3
FAN10G0899 Fragaria x ananassa HOM05D002255 ORTHO05D002288 5.5e-08 62.0 163 30.7
Gohir.A08G034900 Gossypium hirsutum HOM05D002255 ORTHO05D002288 7.2e-08 61.6 182 28.0
Potri.002G178900 Populus trichocarpa HOM05D002255 ORTHO05D002288 7.2e-08 61.6 195 25.6
Sp5g01430 Schrenkiella parvula HOM05D002255 ORTHO05D002288 9.4e-08 61.2 164 25.6
FvH4_7g17560 Fragaria vesca HOM05D002255 ORTHO05D002288 1.2e-07 60.8 163 30.1
FAN03G3289 Fragaria x ananassa HOM05D002255 ORTHO05D002288 1.2e-07 60.8 163 30.1
FAN06G3840 Fragaria x ananassa HOM05D002255 ORTHO05D002288 1.2e-07 60.8 163 30.1
MELO3C016367.2 Cucumis melo HOM05D002255 ORTHO05D002288 1.6e-07 60.5 191 25.7
Hma1.2p1_1697F.1_g298070 Hydrangea macrophylla HOM05D002255 ORTHO05D002288 1.6e-07 60.5 172 26.7
Hma1.2p1_2008F.1_g310960 Hydrangea macrophylla HOM05D002255 ORTHO05D002288 1.6e-07 60.5 172 26.7
FAN04G2345 Fragaria x ananassa HOM05D002255 ORTHO05D002288 2.1e-07 60.1 123 35.8
Rhsim02G0253400 Rhododendron simsii HOM05D002255 ORTHO05D002288 2.1e-07 60.1 150 29.3
Nitab4.5_0002053g0080 Nicotiana tabacum HOM05D002255 ORTHO05D002288 2.7e-07 59.7 170 26.5
CDE04G1535 Ceratophyllum demersum HOM05D002255 ORTHO05D002288 3.6e-07 59.3 160 25.6
Nitab4.5_0004249g0030 Nicotiana tabacum HOM05D002255 ORTHO05D002288 3.6e-07 59.3 188 28.2
EL10Ac1g00192 Beta vulgaris HOM05D002255 ORTHO05D002288 4.6e-07 58.9 142 29.6
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 4.6e-07 58.9 165 29.1
HanXRQChr17g0534111 Helianthus annuus HOM05D002255 ORTHO05D002288 4.6e-07 58.9 162 26.5
MD07G1158800 Malus domestica HOM05D002255 ORTHO05D002288 4.6e-07 58.9 160 27.5
PGSC0003DMG400011267 Solanum tuberosum HOM05D002255 ORTHO05D002288 4.6e-07 58.9 157 28.0
Lsat_1_v5_gn_0_45861 Lactuca sativa HOM05D002255 ORTHO05D002288 6.1e-07 58.5 165 28.5
Lsat_1_v5_gn_3_14761 Lactuca sativa HOM05D002255 ORTHO05D002288 6.1e-07 58.5 165 28.5
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 6.1e-07 58.5 159 27.7
FAN06G4558 Fragaria x ananassa HOM05D002255 ORTHO05D002288 1.0e-06 57.8 151 29.8
Eucgr.E01061 Eucalyptus grandis HOM05D002255 ORTHO05D002288 1.4e-06 57.4 184 28.3
QL02p029876 Quercus lobata HOM05D002255 ORTHO05D002288 1.8e-06 57.0 56 51.8
CSS0018027 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 5.1e-06 55.5 175 26.9
Sabra11G0146400 Salix brachista HOM05D002255 ORTHO05D002288 5.1e-06 55.5 157 27.4
COL.COLO4_14359 Corchorus olitorius HOM05D002916 ORTHO05D003152 6.7e-06 55.1 141 31.2


User provided reference genes

Program Settings