Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019851 Chenopodium quinoa HOM05D003645 ORTHO05D039030 9.8e-102 373.6 211 100.0
EL10Ac5g12926 Beta vulgaris HOM05D003645 ORTHO05D039030 2.1e-27 126.7 161 43.5
Ah.12g052620 Amaranthus hybridus HOM05D003645 ORTHO05D004395 7.7e-22 108.2 163 40.5
Phvul.002G298900 Phaseolus vulgaris HOM05D003645 ORTHO05D004395 2.3e-18 96.7 168 35.7
EL10Ac5g12927 Beta vulgaris HOM05D003645 ORTHO05D004395 8.8e-18 94.7 144 39.6
Cc08_g16180 Coffea canephora HOM05D003645 ORTHO05D004395 8.8e-18 94.7 162 36.4
Glyma.08G023500 Glycine max HOM05D003645 ORTHO05D004395 8.8e-18 94.7 171 34.5
Lj4g0007254 Lotus japonicus HOM05D003645 ORTHO05D004395 8.8e-18 94.7 168 36.3
Rhsim07G0081700 Rhododendron simsii HOM05D003645 ORTHO05D004395 1.5e-17 94.0 171 36.8
Glyma.05G217500 Glycine max HOM05D003645 ORTHO05D004395 2.6e-17 93.2 171 33.9
VMungo0251G3746 Vigna mungo HOM05D003645 ORTHO05D004395 5.7e-17 92.0 171 34.5
TWI60G1019 Tripterygium wilfordii HOM05D003645 ORTHO05D004395 7.5e-17 91.7 172 33.7
CiPaw.12G081900 Carya illinoinensis HOM05D003645 ORTHO05D004395 9.7e-17 91.3 163 37.4
Migut.E01256 Erythranthe guttata HOM05D003645 ORTHO05D004395 9.7e-17 91.3 174 35.1
Glyma.01G226100 Glycine max HOM05D003645 ORTHO05D004395 1.7e-16 90.5 157 36.3
Ca_17476_v3 Cicer arietinum L. HOM05D003645 ORTHO05D004395 2.8e-16 89.7 171 33.9
Lalb_Chr09g0332361 Lupinus albus HOM05D003645 ORTHO05D004395 2.8e-16 89.7 166 31.9
TPR.G37939 Trifolium pratense HOM05D003645 ORTHO05D004395 2.8e-16 89.7 169 33.1
Actinidia27314 Actinidia chinensis HOM05D003645 ORTHO05D004395 3.7e-16 89.4 167 34.7
TAR629G1680 Trochodendron aralioides HOM05D003645 ORTHO05D004395 3.7e-16 89.4 157 35.0
CSS0029909 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 4.8e-16 89.0 163 35.0
CSS0035334 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 4.8e-16 89.0 163 35.0
Lj2P165T30 Lonicera japonica HOM05D003645 ORTHO05D004395 4.8e-16 89.0 171 33.9
SalBow8G5128 Salvia bowleyana HOM05D003645 ORTHO05D004395 4.8e-16 89.0 172 33.7
Ciclev10022256m.g Citrus clementina HOM05D003645 ORTHO05D004395 6.3e-16 88.6 168 35.1
SalBow6G5928 Salvia bowleyana HOM05D003645 ORTHO05D004395 6.3e-16 88.6 172 33.7
CSS0000881 Camellia sinensis var. sinensis HOM05D003645 ORTHO05D004395 8.2e-16 88.2 163 35.0
ClCG07G011530 Citrullus lanatus HOM05D003645 ORTHO05D004395 8.2e-16 88.2 163 35.0
arahy.Tifrunner.gnm1.ann1.QCE7ZS Arachis hypogaea HOM05D003645 ORTHO05D004395 1.1e-15 87.8 174 32.2
Potri.003G141200 Populus trichocarpa HOM05D003645 ORTHO05D004395 1.1e-15 87.8 171 34.5
Medtr8g099560 Medicago truncatula HOM05D003645 ORTHO05D004395 1.4e-15 87.4 171 33.3
Potri.001G090400 Populus trichocarpa HOM05D003645 ORTHO05D004395 1.4e-15 87.4 172 35.5
Prupe.5G121700 Prunus persica HOM05D003645 ORTHO05D004395 1.4e-15 87.4 168 35.7
QL02p030173 Quercus lobata HOM05D003645 ORTHO05D004395 1.4e-15 87.4 160 33.8
Sc01g0010350 Simmondsia chinensis HOM05D003645 ORTHO05D004395 1.4e-15 87.4 174 35.1
MELO3C016302.2 Cucumis melo HOM05D003645 ORTHO05D004395 1.8e-15 87.0 161 32.3
FAN04G0742 Fragaria x ananassa HOM05D003645 ORTHO05D004395 1.8e-15 87.0 183 32.8
Gohir.A12G237400 Gossypium hirsutum HOM05D003645 ORTHO05D004395 1.8e-15 87.0 175 34.9
Gohir.D12G238600 Gossypium hirsutum HOM05D003645 ORTHO05D004395 1.8e-15 87.0 175 34.9
Gorai.008G255500 Gossypium raimondii HOM05D003645 ORTHO05D004395 1.8e-15 87.0 175 34.9
Hma1.2p1_0440F.1_g153400 Hydrangea macrophylla HOM05D003645 ORTHO05D004395 1.8e-15 87.0 163 35.0
Cpa.g.sc79.18 Carica papaya HOM05D003645 ORTHO05D004395 2.4e-15 86.7 157 36.3
Dinv38825 Davidia involucrata HOM05D003645 ORTHO05D004395 2.4e-15 86.7 152 36.8
Lalb_Chr05g0224071 Lupinus albus HOM05D003645 ORTHO05D004395 2.4e-15 86.7 166 31.9
RcHm_v2.0_Chr7g0194471 Rosa chinensis HOM05D003645 ORTHO05D004395 2.4e-15 86.7 187 32.1
BcaC09g50929 Brassica carinata HOM05D003645 ORTHO05D004395 3.1e-15 86.3 182 30.8
BolC1t01843H Brassica oleracea HOM05D003645 ORTHO05D004395 3.1e-15 86.3 182 30.8
Manes.02G009000 Manihot esculenta HOM05D003645 ORTHO05D004395 3.1e-15 86.3 170 35.9
Nn3g18992 Nelumbo nucifera HOM05D003645 ORTHO05D004395 3.1e-15 86.3 159 36.5
C01p19170 Brassica napus HOM05D003645 ORTHO05D004395 4.1e-15 85.9 182 30.8
Duzib084G0645 Durio zibethinus HOM05D003645 ORTHO05D004395 4.1e-15 85.9 176 34.1
Oeu009968.1 Olea europaea HOM05D003645 ORTHO05D004395 4.1e-15 85.9 164 33.5
Sabra03G0101700 Salix brachista HOM05D003645 ORTHO05D004395 4.1e-15 85.9 171 34.5
TAR636G1231 Trochodendron aralioides HOM05D003645 ORTHO05D004395 4.1e-15 85.9 158 34.2
TPR.G30941 Trifolium pratense HOM05D003645 ORTHO05D004395 5.3e-15 85.5 171 32.7
Nn1g00238 Nelumbo nucifera HOM05D003645 ORTHO05D004395 7.0e-15 85.1 159 32.7
PGR042G2331 Punica granatum HOM05D003645 ORTHO05D004395 7.0e-15 85.1 183 32.2
Sabra01G0066600 Salix brachista HOM05D003645 ORTHO05D004395 7.0e-15 85.1 180 32.2
TWI15G0699 Tripterygium wilfordii HOM05D003645 ORTHO05D004395 7.0e-15 85.1 170 33.5
CAN.G1804.15 Capsicum annuum HOM05D003645 ORTHO05D004395 9.1e-15 84.7 161 34.8
Glyma.11G016700 Glycine max HOM05D003645 ORTHO05D004395 9.1e-15 84.7 157 36.9
Psat7g024440 Pisum sativum HOM05D003645 ORTHO05D004395 9.1e-15 84.7 171 32.7
BcaNung01100 Brassica carinata HOM05D003645 ORTHO05D004395 1.2e-14 84.3 184 30.4
LjContig00222g0023656 Lotus japonicus HOM05D003645 ORTHO05D004395 1.2e-14 84.3 170 31.8
PSO761G0226 Papaver somniferum HOM05D003645 ORTHO05D004395 1.2e-14 84.3 173 33.5
Thecc.03G299800 Theobroma cacao HOM05D003645 ORTHO05D004395 1.2e-14 84.3 177 34.5
Lsat_1_v5_gn_6_83800 Lactuca sativa HOM05D003645 ORTHO05D004395 1.6e-14 84.0 157 34.4
BraA01t01462Z Brassica rapa HOM05D003645 ORTHO05D004395 2.0e-14 83.6 182 30.2
Duzib205G1546 Durio zibethinus HOM05D003645 ORTHO05D004395 2.0e-14 83.6 178 32.6
PSO210G6387 Papaver somniferum HOM05D003645 ORTHO05D004395 2.6e-14 83.2 175 33.7
Nitab4.5_0001210g0150 Nicotiana tabacum HOM05D003645 ORTHO05D004395 3.5e-14 82.8 161 32.9
Nitab4.5_0006775g0010 Nicotiana tabacum HOM05D003645 ORTHO05D004395 3.5e-14 82.8 161 32.9
Peaxi162Scf00074g00076 Petunia axillaris HOM05D003645 ORTHO05D004395 3.5e-14 82.8 164 31.1
Lalb_Chr09g0320621 Lupinus albus HOM05D003645 ORTHO05D004395 4.5e-14 82.4 167 32.9
MD06G1108900 Malus domestica HOM05D003645 ORTHO05D004395 4.5e-14 82.4 172 33.1
Phvul.002G165000 Phaseolus vulgaris HOM05D003645 ORTHO05D004395 4.5e-14 82.4 172 34.9
Aa31LG6G7170 Aethionema arabicum HOM05D003645 ORTHO05D004395 5.9e-14 82.0 177 32.2
Ca_24497_v3 Cicer arietinum L. HOM05D003645 ORTHO05D004395 5.9e-14 82.0 153 34.0
Eucgr.D01751 Eucalyptus grandis HOM05D003645 ORTHO05D004395 5.9e-14 82.0 190 31.6
Medtr5g009130 Medicago truncatula HOM05D003645 ORTHO05D004395 5.9e-14 82.0 166 32.5
A01p15240 Brassica napus HOM05D003645 ORTHO05D004395 1.0e-13 81.3 182 29.1
DCAR_005391 Daucus carota HOM05D003645 ORTHO05D004395 1.0e-13 81.3 158 32.3
SGA_v2.0_scaffold111G31406 Striga asiatica HOM05D003645 ORTHO05D004395 1.0e-13 81.3 174 35.1
Duzib068G0630 Durio zibethinus HOM05D003645 ORTHO05D004395 1.3e-13 80.9 170 33.5
MBI06_g08483_MAGBIO Magnolia biondii HOM05D003645 ORTHO05D004395 1.3e-13 80.9 171 33.9
Haze_09079 Corylus avellana HOM05D003645 ORTHO05D004395 2.9e-13 79.7 177 32.2
Haze_09080 Corylus avellana HOM05D003645 ORTHO05D004395 2.9e-13 79.7 177 32.2
PSO135G0996 Papaver somniferum HOM05D003645 ORTHO05D004395 2.9e-13 79.7 165 30.9
Sp7g21900 Schrenkiella parvula HOM05D003645 ORTHO05D004395 2.9e-13 79.7 182 32.4
CAN.G1415.29 Capsicum annuum HOM05D003645 ORTHO05D004395 3.8e-13 79.3 174 32.8
PGSC0003DMG400012142 Solanum tuberosum HOM05D003645 ORTHO05D004395 3.8e-13 79.3 174 31.0
CiPaw.11G119800 Carya illinoinensis HOM05D003645 ORTHO05D004395 5.0e-13 79.0 167 33.5
PSO384G2325 Papaver somniferum HOM05D003645 ORTHO05D004395 5.0e-13 79.0 166 30.7
Solyc01g096000.2 Solanum lycopersicum HOM05D003645 ORTHO05D004395 5.0e-13 79.0 174 32.2
Sopen01g039720 Solanum pennellii HOM05D003645 ORTHO05D004395 5.0e-13 79.0 176 33.0
PGSC0003DMG400000115 Solanum tuberosum HOM05D003645 ORTHO05D004395 5.0e-13 79.0 174 33.3
DCAR_025255 Daucus carota HOM05D003645 ORTHO05D004395 6.5e-13 78.6 170 32.4
THA.LOC104806437 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 6.5e-13 78.6 166 34.3
Carub.0007s1715 Capsella rubella HOM05D003645 ORTHO05D004395 1.1e-12 77.8 172 30.2
ATR0602G203 Amborella trichopoda HOM05D003645 ORTHO05D004395 1.5e-12 77.4 162 35.2
A03p54860 Brassica napus HOM05D003645 ORTHO05D004395 1.5e-12 77.4 174 30.5
BraA03t14553Z Brassica rapa HOM05D003645 ORTHO05D004395 1.5e-12 77.4 174 30.5
Sed0026909 Sechium edule HOM05D003645 ORTHO05D004395 1.5e-12 77.4 150 33.3
Solyc08g082470.1 Solanum lycopersicum HOM05D003645 ORTHO05D004395 1.5e-12 77.4 174 30.5
Migut.B01875 Erythranthe guttata HOM05D003645 ORTHO05D004395 1.9e-12 77.0 163 33.1
Sc23g0002090 Simmondsia chinensis HOM05D003645 ORTHO05D004395 1.9e-12 77.0 165 32.1
SGA_v2.0_scaffold5G03021 Striga asiatica HOM05D003645 ORTHO05D004395 1.9e-12 77.0 157 32.5
CsaV3_4G006680 Cucumis sativus L. HOM05D003645 ORTHO05D004395 2.5e-12 76.6 152 32.2
C07p53240 Brassica napus HOM05D003645 ORTHO05D004395 4.2e-12 75.9 174 32.2
BolC7t45819H Brassica oleracea HOM05D003645 ORTHO05D004395 4.2e-12 75.9 174 32.2
Psat2g185920 Pisum sativum HOM05D003645 ORTHO05D004395 5.5e-12 75.5 164 29.3
FAN18G2610 Fragaria x ananassa HOM05D003645 ORTHO05D004395 9.4e-12 74.7 150 35.3
Sopen08g030720 Solanum pennellii HOM05D003645 ORTHO05D004395 9.4e-12 74.7 174 29.9
HPP92_023897 Vanilla planifolia HOM05D003645 ORTHO05D004395 1.2e-11 74.3 169 31.4
MD14G1129800 Malus domestica HOM05D003645 ORTHO05D004395 1.6e-11 73.9 171 31.6
SGA_v2.0_scaffold96G29020 Striga asiatica HOM05D003645 ORTHO05D004395 1.6e-11 73.9 160 34.4
BcaNung04245 Brassica carinata HOM05D003645 ORTHO05D004395 2.1e-11 73.6 174 32.2
BcaNung04246 Brassica carinata HOM05D003645 ORTHO05D004395 2.1e-11 73.6 174 32.2
Gohir.D03G083900 Gossypium hirsutum HOM05D003645 ORTHO05D004395 2.1e-11 73.6 183 29.5
Gorai.003G078700 Gossypium raimondii HOM05D003645 ORTHO05D004395 2.1e-11 73.6 183 29.5
Lsat_1_v5_gn_4_33021 Lactuca sativa HOM05D003645 ORTHO05D004395 2.1e-11 73.6 178 32.0
Zm00001eb119080 Zea mays HOM05D003645 ORTHO05D004395 3.6e-11 72.8 162 29.0
Aqoxy7G00085 Aquilegia oxysepala HOM05D003645 ORTHO05D004395 6.1e-11 72.0 169 30.2
Gohir.A02G099800 Gossypium hirsutum HOM05D003645 ORTHO05D004395 6.1e-11 72.0 183 30.6
MSTRG.17346 Avicennia marina HOM05D003645 ORTHO05D004395 8.0e-11 71.6 162 32.1
Cc02_g39420 Coffea canephora HOM05D003645 ORTHO05D004395 1.4e-10 70.9 182 30.2
Peaxi162Scf00786g00005 Petunia axillaris HOM05D003645 ORTHO05D004395 3.0e-10 69.7 137 35.8
HPP92_008814 Vanilla planifolia HOM05D003645 ORTHO05D004395 3.0e-10 69.7 165 29.7
Nitab4.5_0013740g0010 Nicotiana tabacum HOM05D003645 ORTHO05D004395 6.8e-10 68.6 165 31.5
Zm00001eb350300 Zea mays HOM05D003645 ORTHO05D004395 6.8e-10 68.6 172 27.3
Atru.chr9.1968 Acer truncatum HOM05D003645 ORTHO05D004395 8.8e-10 68.2 160 31.9
CANSAT21G0134 Cannabis sativa HOM05D003645 ORTHO05D004395 1.5e-09 67.4 179 27.4
Rhsim01G0172700 Rhododendron simsii HOM05D003645 ORTHO05D004395 1.5e-09 67.4 160 30.0
SalBow3G4392 Salvia bowleyana HOM05D003645 ORTHO05D004395 2.0e-09 67.0 160 30.6
Oeu007891.1 Olea europaea HOM05D003645 ORTHO05D004395 2.6e-09 66.6 175 30.9
Oeu007892.1 Olea europaea HOM05D003645 ORTHO05D004395 2.6e-09 66.6 175 30.9
Dinv32594 Davidia involucrata HOM05D003645 ORTHO05D004395 4.8e-08 62.4 165 31.5
Actinidia22734 Actinidia chinensis HOM05D003645 ORTHO05D004395 1.4e-07 60.8 164 29.9
AUR62010853 Chenopodium quinoa HOM05D003645 ORTHO05D004395 2.4e-07 60.1 106 34.0
HanXRQChr13g0415381 Helianthus annuus HOM05D003645 ORTHO05D004395 2.4e-07 60.1 157 28.7
THA.LOC104817593 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 2.4e-07 60.1 91 36.3
AUR62023456 Chenopodium quinoa HOM05D003645 ORTHO05D004395 5.4e-07 58.9 150 30.0
Ah.05g179520 Amaranthus hybridus HOM05D003645 ORTHO05D004395 7.0e-07 58.5 153 30.7
Os05g0238400 Oryza sativa ssp. japonica HOM05D003645 ORTHO05D004395 7.0e-07 58.5 190 27.4
unitig_899.g14798 Utricularia gibba HOM05D003645 ORTHO05D004395 7.0e-07 58.5 150 28.0
Aa31LG2G1450 Aethionema arabicum HOM05D003645 ORTHO05D004395 1.2e-06 57.8 91 35.2
Thhalv10023571m.g Eutrema salsugineum HOM05D003645 ORTHO05D004395 1.2e-06 57.8 91 35.2
Os01g0234700 Oryza sativa ssp. japonica HOM05D003645 ORTHO05D004395 1.2e-06 57.8 171 25.1
AT1G64450 Arabidopsis thaliana HOM05D003645 ORTHO05D004395 2.0e-06 57.0 91 35.2
A09p14690 Brassica napus HOM05D003645 ORTHO05D004395 2.0e-06 57.0 103 32.0
BraA09t37115Z Brassica rapa HOM05D003645 ORTHO05D004395 2.0e-06 57.0 103 32.0
Carub.0002s0032 Capsella rubella HOM05D003645 ORTHO05D004395 2.7e-06 56.6 91 34.1
CDE10G1317 Ceratophyllum demersum HOM05D003645 ORTHO05D004395 2.7e-06 56.6 119 30.3
Lsat_1_v5_gn_3_140300 Lactuca sativa HOM05D003645 ORTHO05D004395 2.7e-06 56.6 163 30.1
Sp2g00290 Schrenkiella parvula HOM05D003645 ORTHO05D004395 2.7e-06 56.6 91 34.1
HPP92_023824 Vanilla planifolia HOM05D003645 ORTHO05D004395 3.5e-06 56.2 131 29.8
THA.LOC104809648 Tarenaya hassleriana HOM05D003645 ORTHO05D004395 7.7e-06 55.1 91 35.2


User provided reference genes

Program Settings