Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 0.0e+00 1428.7 715 100.0
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 0.0e+00 1097.0 661 85.5
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.4e-285 986.1 718 71.6
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 7.6e-263 910.6 720 66.5
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 8.8e-203 711.1 712 52.5
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 6.1e-188 661.8 727 49.4
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 1.2e-186 657.5 722 49.4
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 4.4e-186 655.6 720 49.6
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 1.5e-181 640.6 720 49.6
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 1.9e-181 640.2 721 47.3
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.9e-181 640.2 732 47.4
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 2.5e-181 639.8 722 47.4
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 1.2e-180 637.5 726 47.5
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 5.2e-179 632.1 725 47.6
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 6.3e-177 625.2 735 48.2
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 4.5e-175 619.0 733 48.8
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 5.0e-174 615.5 738 46.3
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 6.6e-174 615.1 735 46.3
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 2.8e-172 609.8 726 46.7
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 6.8e-171 605.1 714 45.8
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 8.9e-171 604.7 729 48.4
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 1.2e-170 604.4 686 46.5
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 4.4e-170 602.4 734 46.3
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 1.7e-169 600.5 725 45.5
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 2.9e-169 599.7 726 45.9
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.4e-168 597.4 723 46.6
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 4.1e-168 595.9 724 45.2
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 7.0e-168 595.1 725 44.1
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 6.6e-166 588.6 723 46.2
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 1.5e-165 587.4 723 46.2
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.4e-163 580.9 699 46.2
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 2.3e-163 580.1 736 44.8
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.6e-162 576.6 711 44.6
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.3e-161 574.3 739 45.6
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 4.9e-161 572.4 664 46.7
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 5.4e-160 568.9 734 44.7
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.6e-159 567.4 732 43.9
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 4.6e-159 565.8 654 48.2
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 6.0e-159 565.5 717 43.4
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 1.7e-158 563.9 738 44.9
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 9.5e-157 558.1 738 42.4
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 9.5e-157 558.1 770 44.9
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 2.1e-156 557.0 695 46.8
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 1.4e-155 554.3 545 52.8
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.4e-155 554.3 742 42.0
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 2.3e-155 553.5 722 44.5
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 3.1e-155 553.1 711 42.9
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.2e-153 547.0 665 45.1
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 4.1e-152 542.7 723 42.2
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 7.1e-152 542.0 711 42.9
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 7.1e-152 542.0 723 41.9
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 1.6e-151 540.8 731 43.9
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.1e-151 540.4 733 44.1
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 3.5e-151 539.7 754 41.8
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.3e-150 537.0 720 42.2
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 1.1e-149 534.6 724 42.3
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 2.5e-149 533.5 722 43.2
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 7.3e-149 531.9 721 42.4
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 4.7e-148 529.3 742 43.5
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 4.7e-148 529.3 656 44.5
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 1.8e-147 527.3 720 41.8
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 2.4e-147 526.9 749 40.6
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.6e-146 523.5 707 41.9
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.7e-145 520.8 711 42.6
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 4.1e-144 516.2 732 42.8
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 4.1e-144 516.2 724 42.7
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 5.4e-144 515.8 723 42.7
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 5.4e-144 515.8 729 42.8
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 5.4e-144 515.8 685 42.3
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 6.6e-142 508.8 728 41.8
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 9.6e-141 505.0 734 40.2
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 4.0e-139 499.6 759 41.1
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 4.0e-139 499.6 723 41.9
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 6.9e-139 498.8 732 41.7
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.0e-138 497.3 733 40.8
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.0e-138 497.3 732 41.1
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.6e-138 496.9 735 42.2
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 7.6e-138 495.4 671 43.8
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 2.9e-137 493.4 718 39.4
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.1e-136 491.5 707 40.2
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 1.4e-136 491.1 730 41.0
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.1e-136 488.8 726 39.4
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.0e-134 485.0 727 41.4
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 3.0e-134 483.4 738 40.1
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 3.9e-134 483.0 764 38.1
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 1.5e-133 481.1 723 39.7
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 7.6e-130 468.8 650 42.0
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 4.2e-128 463.0 695 40.1
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 2.3e-126 457.2 682 39.4
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 8.1e-124 448.7 704 38.9
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.6e-122 443.7 702 38.9
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 6.0e-119 432.6 719 38.1
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 8.7e-118 428.7 562 44.5
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 4.3e-117 426.4 704 38.1
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 2.9e-113 413.7 609 41.7
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 8.4e-113 412.1 531 45.8
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 1.9e-112 411.0 533 45.4
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 3.2e-112 410.2 769 34.7
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 4.6e-111 406.4 530 45.1
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 4.3e-109 399.8 770 33.9
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 4.1e-107 393.3 760 33.4
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 3.2e-104 383.6 519 43.9
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 2.2e-100 370.9 699 34.2
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 2.4e-99 367.5 757 33.7
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 4.7e-95 353.2 629 34.7
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 5.5e-88 329.7 730 32.1
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.6e-87 328.2 438 42.9
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 4.4e-85 320.1 484 40.9
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 3.2e-80 303.9 647 31.8
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 2.1e-79 301.2 277 51.6
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.0e-78 298.9 535 36.3
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.5e-77 295.0 387 41.3
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 1.6e-74 285.0 261 53.6
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 2.9e-73 280.8 342 46.8
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.5e-69 268.5 641 30.1
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 3.6e-63 247.3 202 60.4
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 2.3e-62 244.6 326 43.9
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 2.5e-56 224.6 348 41.4
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 2.0e-53 214.9 363 39.4
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 3.1e-46 191.0 292 38.4
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 6.0e-42 176.8 114 63.2
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 2.3e-25 121.7 107 57.0
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 4.0e-22 110.9 153 42.5
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 2.6e-21 108.2 156 44.2
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 5.8e-21 107.1 146 43.8
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 1.2e-18 99.4 128 43.8
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.6e-18 99.0 112 46.4
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 4.6e-18 97.4 125 45.6
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.8e-13 80.5 87 48.3
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 7.9e-10 70.1 73 53.4


User provided reference genes

Program Settings