Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019463 Chenopodium quinoa HOM05D000094 ORTHO05D000455 3.1e-94 349.7 431 100.0
AUR62036168 Chenopodium quinoa HOM05D000094 ORTHO05D000455 2.7e-53 213.8 211 87.7
EL10Ac4g08213 Beta vulgaris HOM05D000094 ORTHO05D000455 3.1e-25 120.6 114 55.3
AUR62019446 Chenopodium quinoa HOM05D000094 ORTHO05D000455 2.0e-24 117.9 120 50.0
AUR62036178 Chenopodium quinoa HOM05D000094 ORTHO05D000455 6.0e-21 106.3 117 47.9
Haze_09444 Corylus avellana HOM05D000094 ORTHO05D000455 1.7e-20 104.8 117 46.2
QL08p022376 Quercus lobata HOM05D000094 ORTHO05D000455 1.7e-20 104.8 112 45.5
Duzib213G0677 Durio zibethinus HOM05D000094 ORTHO05D000455 5.1e-20 103.2 111 45.9
Ciclev10007314m.g Citrus clementina HOM05D000094 ORTHO05D000455 8.6e-20 102.4 109 45.9
TWI38G2042 Tripterygium wilfordii HOM05D000094 ORTHO05D000455 1.5e-19 101.7 108 49.1
TAR627G0928 Trochodendron aralioides HOM05D000094 ORTHO05D000455 1.5e-19 101.7 106 45.3
TAR627G1188 Trochodendron aralioides HOM05D000094 ORTHO05D000455 1.5e-19 101.7 106 45.3
RcHm_v2.0_Chr5g0032901 Rosa chinensis HOM05D000094 ORTHO05D000455 1.9e-19 101.3 108 49.1
Gohir.A04G032900 Gossypium hirsutum HOM05D000094 ORTHO05D000455 2.5e-19 100.9 109 47.7
Thecc.07G094600 Theobroma cacao HOM05D000094 ORTHO05D000455 5.6e-19 99.8 111 45.9
Cfa020568 Carpinus fangiana HOM05D000094 ORTHO05D000455 7.3e-19 99.4 114 46.5
Gorai.009G381200 Gossypium raimondii HOM05D000094 ORTHO05D000455 1.6e-18 98.2 109 48.6
FvH4_3g19680 Fragaria vesca HOM05D000094 ORTHO05D000455 2.1e-18 97.8 110 49.1
FAN11G1613 Fragaria x ananassa HOM05D000094 ORTHO05D000455 3.6e-18 97.1 110 49.1
CiPaw.12G119400 Carya illinoinensis HOM05D000094 ORTHO05D000455 4.7e-18 96.7 110 43.6
Gohir.D01G048700 Gossypium hirsutum HOM05D000094 ORTHO05D000455 8.1e-18 95.9 115 42.6
Gorai.002G068500 Gossypium raimondii HOM05D000094 ORTHO05D000455 8.1e-18 95.9 115 42.6
Prupe.4G177400 Prunus persica HOM05D000094 ORTHO05D000455 1.1e-17 95.5 111 43.2
Dinv14929 Davidia involucrata HOM05D000094 ORTHO05D000455 1.4e-17 95.1 104 45.2
Aqoxy1G02362 Aquilegia oxysepala HOM05D000094 ORTHO05D000455 6.8e-17 92.8 114 43.0
Aqoxy367s001 Aquilegia oxysepala HOM05D000094 ORTHO05D000455 6.8e-17 92.8 114 43.0
Sabra11G0102500 Salix brachista HOM05D000094 ORTHO05D000455 6.8e-17 92.8 113 43.4
FAN25G0072 Fragaria x ananassa HOM05D000094 ORTHO05D000455 2.6e-16 90.9 110 46.4
Potri.011G116900 Populus trichocarpa HOM05D000094 ORTHO05D000455 2.6e-16 90.9 113 43.4
Phvul.011G161000 Phaseolus vulgaris HOM05D000094 ORTHO05D000455 4.4e-16 90.1 108 43.5
Gohir.A01G062100 Gossypium hirsutum HOM05D000094 ORTHO05D000455 7.6e-16 89.4 115 40.0
MD11G1251700 Malus domestica HOM05D000094 ORTHO05D000455 7.6e-16 89.4 110 43.6
Sabra16G0261200 Salix brachista HOM05D000094 ORTHO05D000455 7.6e-16 89.4 108 40.7
Nn1g06474 Nelumbo nucifera HOM05D000094 ORTHO05D000455 9.9e-16 89.0 110 42.7
DCAR_013115 Daucus carota HOM05D000094 ORTHO05D000455 1.7e-15 88.2 114 40.4
Eucgr.F01155 Eucalyptus grandis HOM05D000094 ORTHO05D000455 2.9e-15 87.4 101 43.6
Sc16g0007100 Simmondsia chinensis HOM05D000094 ORTHO05D000455 2.9e-15 87.4 112 43.8
VMungo1127G1210 Vigna mungo HOM05D000094 ORTHO05D000455 2.9e-15 87.4 108 41.7
Dinv20188 Davidia involucrata HOM05D000094 ORTHO05D000455 1.1e-14 85.5 106 40.6
Actinidia09694 Actinidia chinensis HOM05D000094 ORTHO05D000455 1.4e-14 85.1 105 42.9
PGR083G2473 Punica granatum HOM05D000094 ORTHO05D000455 1.4e-14 85.1 103 42.7
Peaxi162Scf00069g00163 Petunia axillaris HOM05D000094 ORTHO05D000455 4.1e-14 83.6 105 41.0
Potri.001G398500 Populus trichocarpa HOM05D000094 ORTHO05D000455 4.1e-14 83.6 108 39.8
Actinidia12800 Actinidia chinensis HOM05D000094 ORTHO05D000455 7.1e-14 82.8 105 41.0
CiPaw.11G171200 Carya illinoinensis HOM05D000094 ORTHO05D000455 1.2e-13 82.0 106 40.6
ECA236G0396 Erigeron canadensis HOM05D000094 ORTHO05D000455 1.2e-13 82.0 110 38.2
Solyc07g063000.4 Solanum lycopersicum HOM05D000094 ORTHO05D000455 1.2e-13 82.0 103 40.8
PGSC0003DMG400012443 Solanum tuberosum HOM05D000094 ORTHO05D000455 1.2e-13 82.0 103 41.7
Glyma.12G225800 Glycine max HOM05D000094 ORTHO05D000455 2.7e-13 80.9 118 43.2
CAN.G162.45 Capsicum annuum HOM05D000094 ORTHO05D000455 3.5e-13 80.5 103 40.8
Migut.H01950 Erythranthe guttata HOM05D000094 ORTHO05D000455 3.5e-13 80.5 104 38.5
vmacro11881 Vaccinium macrocarpon HOM05D000094 ORTHO05D000455 4.6e-13 80.1 100 43.0
MELO3C019404.2 Cucumis melo HOM05D000094 ORTHO05D000455 6.0e-13 79.7 109 36.7
CsaV3_3G019520 Cucumis sativus L. HOM05D000094 ORTHO05D000455 6.0e-13 79.7 109 36.7
Sopen07g031190 Solanum pennellii HOM05D000094 ORTHO05D000455 6.0e-13 79.7 101 40.6
Glyma.06G238700 Glycine max HOM05D000094 ORTHO05D000455 7.8e-13 79.3 108 41.7
Glyma.12G163062 Glycine max HOM05D000094 ORTHO05D000455 1.0e-12 79.0 108 41.7
ClCG05G009270 Citrullus lanatus HOM05D000094 ORTHO05D000455 1.3e-12 78.6 107 37.4
Nitab4.5_0001148g0060 Nicotiana tabacum HOM05D000094 ORTHO05D000455 1.3e-12 78.6 104 41.3
PSO675G7006 Papaver somniferum HOM05D000094 ORTHO05D000455 1.3e-12 78.6 106 42.5
Lj3g0012716 Lotus japonicus HOM05D000094 ORTHO05D000455 1.7e-12 78.2 108 41.7
CSS0001945 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D000455 3.0e-12 77.4 102 39.2
CSS0040825 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D000455 3.0e-12 77.4 102 39.2
Rhsim06G0201100 Rhododendron simsii HOM05D000094 ORTHO05D000455 3.0e-12 77.4 97 43.3
THA.LOC104811872 Tarenaya hassleriana HOM05D000094 ORTHO05D000455 3.9e-12 77.0 108 39.8
TPR.G7959 Trifolium pratense HOM05D000094 ORTHO05D000455 3.9e-12 77.0 113 40.7
VMungo1080G0770 Vigna mungo HOM05D000094 ORTHO05D000455 3.9e-12 77.0 114 42.1
Lalb_Chr20g0109571 Lupinus albus HOM05D000094 ORTHO05D000455 8.6e-12 75.9 111 42.3
Lalb_Chr25g0286271 Lupinus albus HOM05D000094 ORTHO05D000455 8.6e-12 75.9 113 39.8
Nitab4.5_0001241g0120 Nicotiana tabacum HOM05D000094 ORTHO05D000455 8.6e-12 75.9 101 40.6
Sed0020673 Sechium edule HOM05D000094 ORTHO05D000455 1.1e-11 75.5 110 37.3
AT5G53890 Arabidopsis thaliana HOM05D000094 ORTHO05D000455 1.5e-11 75.1 104 40.4
Glyma.13G275100 Glycine max HOM05D000094 ORTHO05D000455 1.9e-11 74.7 88 45.5
MBI07_g31018_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D000455 2.5e-11 74.3 103 43.7
CARHR267010 Cardamine hirsuta HOM05D000094 ORTHO05D000455 3.3e-11 73.9 107 39.3
HanXRQChr11g0351971 Helianthus annuus HOM05D000094 ORTHO05D000455 4.3e-11 73.6 100 41.0
Phvul.005G073800 Phaseolus vulgaris HOM05D000094 ORTHO05D000455 5.6e-11 73.2 113 41.6
Psat5g241880 Pisum sativum HOM05D000094 ORTHO05D000455 5.6e-11 73.2 84 41.7
Thhalv10012554m.g Eutrema salsugineum HOM05D000094 ORTHO05D000455 9.6e-11 72.4 106 38.7
Carub.0008s1418 Capsella rubella HOM05D000094 ORTHO05D000455 1.2e-10 72.0 80 42.5
Sp6g15950 Schrenkiella parvula HOM05D000094 ORTHO05D000455 1.6e-10 71.6 104 37.5
QL10p003503 Quercus lobata HOM05D000071 ORTHO05D000029 2.8e-10 70.9 112 41.1
AL8G28960 Arabidopsis lyrata HOM05D000094 ORTHO05D000455 3.6e-10 70.5 83 41.0
MSTRG.12898 Avicennia marina HOM05D000094 ORTHO05D000455 4.7e-10 70.1 102 35.3
QL05p001039 Quercus lobata HOM05D000071 ORTHO05D000029 4.7e-10 70.1 112 42.0
Cc03_g11610 Coffea canephora HOM05D000094 ORTHO05D000455 6.2e-10 69.7 100 39.0
Cc05_g11860 Coffea canephora HOM05D000094 ORTHO05D000455 6.2e-10 69.7 100 39.0
Gohir.D02G135100 Gossypium hirsutum HOM05D000094 ORTHO05D000455 1.1e-09 68.9 85 42.4
Gorai.005G151100 Gossypium raimondii HOM05D000094 ORTHO05D000455 1.1e-09 68.9 85 42.4
Ca_03512_v3 Cicer arietinum L. HOM05D000094 ORTHO05D000455 2.4e-09 67.8 77 42.9
Ca_03519_v3 Cicer arietinum L. HOM05D000094 ORTHO05D000455 2.4e-09 67.8 77 42.9
Medtr2g078810 Medicago truncatula HOM05D000094 ORTHO05D000455 2.4e-09 67.8 75 44.0
QL05p009911 Quercus lobata HOM05D000071 ORTHO05D000029 3.1e-09 67.4 116 39.7
Aa31LG3G10050 Aethionema arabicum HOM05D000094 ORTHO05D000455 4.0e-09 67.0 99 36.4
BcaC04g20408 Brassica carinata HOM05D000094 ORTHO05D000455 5.2e-09 66.6 87 35.6
BolC9t57272H Brassica oleracea HOM05D000094 ORTHO05D000455 5.2e-09 66.6 87 35.6
BcaB05g22083 Brassica carinata HOM05D000094 ORTHO05D000455 8.9e-09 65.9 80 37.5
C09p43900 Brassica napus HOM05D000094 ORTHO05D000455 8.9e-09 65.9 87 35.6
QL03p060568 Quercus lobata HOM05D000071 ORTHO05D000029 8.9e-09 65.9 116 37.9
A10p11280 Brassica napus HOM05D000094 ORTHO05D000455 1.2e-08 65.5 103 34.0
BraA10t43220Z Brassica rapa HOM05D000094 ORTHO05D000455 1.2e-08 65.5 103 34.0
Gohir.A03G110500 Gossypium hirsutum HOM05D000094 ORTHO05D000455 1.2e-08 65.5 85 42.4
COL.COLO4_27653 Corchorus olitorius HOM05D000094 ORTHO05D000455 1.5e-08 65.1 84 39.3
QL03p008495 Quercus lobata HOM05D000071 ORTHO05D000029 1.5e-08 65.1 112 39.3
FvH4_6g36810 Fragaria vesca HOM05D001506 ORTHO05D000455 2.0e-08 64.7 100 39.0
FAN14G0819 Fragaria x ananassa HOM05D001506 ORTHO05D000455 2.0e-08 64.7 100 39.0
DCAR_030331 Daucus carota HOM05D000094 ORTHO05D000455 3.4e-08 63.9 93 40.9
ATR0217G002 Amborella trichopoda HOM05D000094 ORTHO05D000455 4.4e-08 63.5 112 35.7
MSTRG.6825 Avicennia marina HOM05D000094 ORTHO05D000455 7.6e-08 62.8 102 31.4
BcaB07g30350 Brassica carinata HOM05D000094 ORTHO05D000455 7.6e-08 62.8 102 37.3
A02p10770 Brassica napus HOM05D000094 ORTHO05D000455 7.6e-08 62.8 103 32.0
C02p17880 Brassica napus HOM05D000094 ORTHO05D000455 7.6e-08 62.8 103 32.0
BraA02t06137Z Brassica rapa HOM05D000094 ORTHO05D000455 7.6e-08 62.8 103 32.0
BcaB05g24394 Brassica carinata HOM05D000094 ORTHO05D000455 1.3e-07 62.0 81 35.8
BcaC03g17124 Brassica carinata HOM05D000094 ORTHO05D000455 1.7e-07 61.6 104 37.5
QL05p009777 Quercus lobata HOM05D000071 ORTHO05D000029 1.7e-07 61.6 117 38.5
Eucgr.J01778 Eucalyptus grandis HOM05D000094 ORTHO05D000455 2.2e-07 61.2 85 40.0
Eucgr.L00617 Eucalyptus grandis HOM05D001506 ORTHO05D000455 2.2e-07 61.2 109 31.2
QL09p014125 Quercus lobata HOM05D000071 ORTHO05D000029 2.2e-07 61.2 108 38.9
TWI74G1550 Tripterygium wilfordii HOM05D000094 ORTHO05D000455 2.2e-07 61.2 92 40.2
C02p50330 Brassica napus HOM05D000094 ORTHO05D000455 3.8e-07 60.5 104 37.5
BolC2t11115H Brassica oleracea HOM05D000094 ORTHO05D000455 3.8e-07 60.5 104 37.5
Manes.07G035200 Manihot esculenta HOM05D000094 ORTHO05D000455 3.8e-07 60.5 84 41.7
QL09p014118 Quercus lobata HOM05D000071 ORTHO05D000029 3.8e-07 60.5 108 38.9
Sp2g13600 Schrenkiella parvula HOM05D000094 ORTHO05D000455 3.8e-07 60.5 113 37.2
BraA02t08286Z Brassica rapa HOM05D000094 ORTHO05D000455 4.9e-07 60.1 107 36.4
COL.COLO4_27661 Corchorus olitorius HOM05D000094 ORTHO05D000455 4.9e-07 60.1 85 37.6
Os02g0153400 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 4.9e-07 60.1 102 35.3
BcaC03g14376 Brassica carinata HOM05D000094 ORTHO05D000455 6.4e-07 59.7 102 31.4
BolC2t07919H Brassica oleracea HOM05D000094 ORTHO05D000455 6.4e-07 59.7 102 31.4
Duzib251G0373 Durio zibethinus HOM05D000094 ORTHO05D000455 6.4e-07 59.7 85 38.8
FAN02G3970 Fragaria x ananassa HOM05D001506 ORTHO05D000455 6.4e-07 59.7 100 37.0
THA.LOC104798562 Tarenaya hassleriana HOM05D001506 ORTHO05D000455 8.4e-07 59.3 105 32.4
Ciclev10003246m.g Citrus clementina HOM05D001506 ORTHO05D000455 1.1e-06 58.9 101 35.6
COL.COLO4_27662 Corchorus olitorius HOM05D000094 ORTHO05D000455 1.1e-06 58.9 85 37.6
COL.COLO4_32316 Corchorus olitorius HOM05D000094 ORTHO05D000455 1.1e-06 58.9 82 41.5
Duzib268G0984 Durio zibethinus HOM05D000094 ORTHO05D000455 1.1e-06 58.9 85 37.6
Gohir.D10G000900 Gossypium hirsutum HOM05D000094 ORTHO05D000455 1.1e-06 58.9 89 39.3
Gorai.011G001200 Gossypium raimondii HOM05D000094 ORTHO05D000455 1.1e-06 58.9 89 39.3
Manes.07G080500 Manihot esculenta HOM05D000094 ORTHO05D000455 1.1e-06 58.9 92 32.6
Os02g0156200 Oryza sativa ssp. japonica HOM05D001506 ORTHO05D000455 1.1e-06 58.9 85 35.3
Atru.chr11.1087 Acer truncatum HOM05D000094 ORTHO05D000455 1.4e-06 58.5 95 35.8
Eucgr.G01149 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.4e-06 58.5 94 39.4
Eucgr.H04973 Eucalyptus grandis HOM05D000021 ORTHO05D000010 1.4e-06 58.5 101 35.6
Medtr8g465340 Medicago truncatula HOM05D000021 ORTHO05D000010 1.4e-06 58.5 114 35.1
SGA_v2.0_scaffold73G24247 Striga asiatica HOM05D000094 ORTHO05D000455 1.4e-06 58.5 110 31.8
Atru.chr12.1324 Acer truncatum HOM05D001506 ORTHO05D000455 1.9e-06 58.2 109 35.8
AL5G11490 Arabidopsis lyrata HOM05D000094 ORTHO05D000455 1.9e-06 58.2 114 34.2
Duzib248G0812 Durio zibethinus HOM05D000094 ORTHO05D000455 1.9e-06 58.2 85 37.6
Potri.017G050600 Populus trichocarpa HOM05D000094 ORTHO05D000455 1.9e-06 58.2 83 43.4
ECA238G3401 Erigeron canadensis HOM05D000021 ORTHO05D000010 2.4e-06 57.8 104 32.7
FvH4_3g39440 Fragaria vesca HOM05D001506 ORTHO05D000455 2.4e-06 57.8 109 33.0
FAN11G1557 Fragaria x ananassa HOM05D001506 ORTHO05D000455 2.4e-06 57.8 109 33.0
MD03G1019300 Malus domestica HOM05D001506 ORTHO05D000455 2.4e-06 57.8 98 32.7
QL05p009960 Quercus lobata HOM05D000071 ORTHO05D000029 2.4e-06 57.8 109 36.7
SEGI_23667 Sequoiadendron giganteum HOM05D000094 ORTHO05D000455 2.4e-06 57.8 69 39.1
Atru.chr12.1322 Acer truncatum HOM05D001506 ORTHO05D000455 3.2e-06 57.4 109 35.8
Gohir.A10G000700 Gossypium hirsutum HOM05D000094 ORTHO05D000455 3.2e-06 57.4 102 37.3
Oeu061726.1 Olea europaea HOM05D000094 ORTHO05D000455 3.2e-06 57.4 91 38.5
Potri.017G050700 Populus trichocarpa HOM05D000094 ORTHO05D000455 3.2e-06 57.4 112 37.5
Prupe.3G029500 Prunus persica HOM05D000094 ORTHO05D000455 3.2e-06 57.4 100 37.0
TWI59G1077 Tripterygium wilfordii HOM05D001506 ORTHO05D000455 3.2e-06 57.4 85 36.5
Ciclev10004232m.g Citrus clementina HOM05D000094 ORTHO05D000455 4.2e-06 57.0 91 35.2
Thhalv10003581m.g Eutrema salsugineum HOM05D000094 ORTHO05D000455 4.2e-06 57.0 111 35.1
Lj8P154T57 Lonicera japonica HOM05D000094 ORTHO05D000455 4.2e-06 57.0 102 35.3
MD09G1171000 Malus domestica HOM05D000094 ORTHO05D000455 4.2e-06 57.0 84 39.3
Manes.10G104100 Manihot esculenta HOM05D000094 ORTHO05D000455 4.2e-06 57.0 85 42.4
Medtr8g469610 Medicago truncatula HOM05D000021 ORTHO05D000010 4.2e-06 57.0 106 33.0
AT2G02220 Arabidopsis thaliana HOM05D000094 ORTHO05D000455 5.4e-06 56.6 107 32.7
FAN25G2730 Fragaria x ananassa HOM05D001506 ORTHO05D000455 5.4e-06 56.6 109 33.9
Glyma.07G047200 Glycine max HOM05D000094 ORTHO05D000455 5.4e-06 56.6 111 32.4
Medtr8g469720 Medicago truncatula HOM05D000021 ORTHO05D000010 5.4e-06 56.6 106 34.0
Os06g0692300 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D000455 5.4e-06 56.6 105 36.2
RcHm_v2.0_Chr5g0071071 Rosa chinensis HOM05D001506 ORTHO05D000455 5.4e-06 56.6 98 31.6
vmacro18707 Vaccinium macrocarpon HOM05D000094 ORTHO05D000455 5.4e-06 56.6 84 34.5
QL05p009155 Quercus lobata HOM05D000071 ORTHO05D000029 7.1e-06 56.2 107 37.4
Aa31LG2G7750 Aethionema arabicum HOM05D000094 ORTHO05D000455 9.3e-06 55.8 112 31.2
ATR0618G359 Amborella trichopoda HOM05D000094 ORTHO05D000455 9.3e-06 55.8 100 33.0
A02p32710 Brassica napus HOM05D000094 ORTHO05D000455 9.3e-06 55.8 107 36.4
Glyma.16G015000 Glycine max HOM05D000094 ORTHO05D000455 9.3e-06 55.8 111 32.4
MD11G1019000 Malus domestica HOM05D001506 ORTHO05D000455 9.3e-06 55.8 84 35.7
RcHm_v2.0_Chr4g0446181 Rosa chinensis HOM05D000094 ORTHO05D000455 9.3e-06 55.8 90 35.6
SalBow7G1900 Salvia bowleyana HOM05D000021 ORTHO05D000010 9.3e-06 55.8 90 33.3
Thecc.02G310800 Theobroma cacao HOM05D000094 ORTHO05D000455 9.3e-06 55.8 85 36.5
VMungo0331G2019 Vigna mungo HOM05D000094 ORTHO05D000455 9.3e-06 55.8 111 31.5


User provided reference genes

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