Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 3.4e-95 352.1 232 100.0
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 4.0e-88 328.6 235 94.9
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 7.5e-79 297.7 234 72.6
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 7.5e-79 297.7 234 77.8
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 1.0e-67 260.8 234 76.5
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 7.3e-58 228.0 234 59.0
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 4.7e-57 225.3 234 59.4
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 5.8e-55 218.4 232 55.2
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 2.2e-54 216.5 234 60.3
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 4.9e-54 215.3 234 49.6
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 1.1e-53 214.2 234 49.1
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.4e-53 213.8 234 53.0
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.4e-53 213.8 234 57.3
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 4.2e-53 212.2 234 50.9
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 1.2e-52 210.7 236 55.1
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 2.1e-52 209.9 235 61.3
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.1e-52 209.9 234 50.0
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 2.7e-52 209.5 234 49.6
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 2.7e-52 209.5 234 47.9
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 3.5e-52 209.1 234 49.6
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 3.5e-52 209.1 235 61.3
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 4.6e-52 208.8 235 51.5
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 6.0e-52 208.4 234 51.3
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 1.3e-51 207.2 235 60.4
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 1.7e-51 206.8 234 59.0
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.3e-51 206.5 234 54.7
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 3.0e-51 206.1 234 60.7
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 6.6e-51 204.9 234 52.1
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 8.7e-51 204.5 234 45.7
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.1e-50 204.1 254 54.7
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 1.9e-50 203.4 240 58.3
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 2.5e-50 203.0 234 50.0
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.3e-50 202.6 234 60.7
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 3.3e-50 202.6 231 60.2
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 4.3e-50 202.2 234 51.3
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 5.6e-50 201.8 235 50.2
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 5.6e-50 201.8 234 49.1
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 5.6e-50 201.8 234 57.3
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 7.3e-50 201.4 234 56.4
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 7.3e-50 201.4 234 48.7
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 9.6e-50 201.1 234 62.0
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.3e-49 200.7 234 61.5
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.6e-49 200.3 234 48.7
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 1.6e-49 200.3 232 54.3
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 2.1e-49 199.9 234 58.1
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 2.8e-49 199.5 234 49.1
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 2.8e-49 199.5 234 61.5
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 2.8e-49 199.5 234 49.1
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 6.2e-49 198.4 234 60.7
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 6.2e-49 198.4 234 60.3
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 6.2e-49 198.4 234 62.0
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 6.2e-49 198.4 234 60.7
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 8.1e-49 198.0 234 60.3
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 8.1e-49 198.0 234 49.1
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.8e-48 196.8 234 51.3
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 3.1e-48 196.1 234 59.8
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 4.0e-48 195.7 234 56.8
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 6.9e-48 194.9 234 58.5
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 6.9e-48 194.9 234 60.3
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 9.0e-48 194.5 234 59.4
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 9.0e-48 194.5 233 49.4
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 2.0e-47 193.4 234 52.6
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 2.0e-47 193.4 234 52.6
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 2.0e-47 193.4 234 47.4
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 2.6e-47 193.0 235 48.9
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 4.5e-47 192.2 234 56.4
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 7.6e-47 191.4 234 55.1
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.3e-46 190.7 235 46.8
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 1.7e-46 190.3 235 46.8
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.7e-46 190.3 234 50.9
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 2.2e-46 189.9 244 47.1
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.9e-46 189.5 233 54.9
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.9e-46 189.5 234 46.6
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 3.8e-46 189.1 241 47.3
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.8e-46 189.1 234 56.0
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 8.4e-46 188.0 235 46.0
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 2.4e-45 186.4 234 51.3
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 9.3e-45 184.5 233 53.2
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.2e-44 184.1 234 47.9
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 4.6e-44 182.2 234 54.3
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.0e-43 181.0 234 53.0
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.8e-43 180.3 235 50.6
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 3.9e-43 179.1 234 44.4
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.3e-41 174.1 198 56.6
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.3e-41 174.1 234 46.2
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.6e-41 173.7 234 50.0
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 2.1e-41 173.3 234 46.6
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 8.1e-41 171.4 234 42.7
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 6.9e-40 168.3 213 45.1
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 4.5e-39 165.6 216 44.9
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.3e-38 164.1 347 40.3
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 2.9e-38 162.9 235 42.1
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 3.8e-38 162.5 234 43.2
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.8e-38 162.5 234 50.0
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.8e-38 162.5 234 50.4
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 4.9e-38 162.2 234 49.6
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.4e-37 160.6 210 54.8
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 7.1e-37 158.3 232 43.5
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.6e-36 157.1 232 48.3
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 6.0e-36 155.2 236 42.4
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 6.0e-36 155.2 236 42.4
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.0e-35 154.5 231 44.6
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.3e-35 153.3 142 58.5
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 9.6e-34 147.9 142 57.7
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 9.6e-34 147.9 142 57.7
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 2.8e-33 146.4 234 47.0
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 3.1e-32 142.9 141 55.3
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 1.5e-31 140.6 237 39.7
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 4.6e-28 129.0 239 36.4
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 5.7e-26 122.1 163 54.0
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.6e-25 120.6 147 53.1
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 2.8e-25 119.8 229 38.0
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 6.3e-25 118.6 226 32.7
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 3.2e-21 106.3 145 44.1
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.1e-18 97.8 234 31.2
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 4.3e-18 95.9 145 42.1
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 9.7e-18 94.7 237 27.8
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.8e-16 90.5 234 30.3
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 9.1e-16 88.2 230 39.1
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 4.5e-15 85.9 229 44.5
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.2e-12 77.8 72 61.1
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 2.0e-10 70.5 66 50.0
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 2.6e-10 70.1 133 34.6
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 6.3e-09 65.5 144 29.9
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 1.1e-08 64.7 38 73.7
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 1.1e-08 64.7 52 48.1
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.6e-07 60.1 35 77.1
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.6e-07 60.1 35 77.1
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.6e-07 60.1 35 77.1
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.6e-07 60.1 35 77.1
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 2.6e-07 60.1 35 77.1
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 7.7e-07 58.5 35 74.3
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 2.9e-06 56.6 144 29.9
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 2.9e-06 56.6 44 59.1
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 8.5e-06 55.1 99 37.4


User provided reference genes

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