Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019378 Chenopodium quinoa HOM05D006590 ORTHO05D008427 0.0e+00 1417.1 706 100.0
AUR62006110 Chenopodium quinoa HOM05D006590 ORTHO05D008427 0.0e+00 1255.4 706 89.9
EL10Ac3g05300 Beta vulgaris HOM05D006590 ORTHO05D008427 5.7e-279 964.1 707 71.7
Sc13g0009780 Simmondsia chinensis HOM05D006590 ORTHO05D008427 9.4e-258 893.6 694 66.0
QL09p009505 Quercus lobata HOM05D006590 ORTHO05D008427 1.4e-256 889.8 712 64.6
Haze_00189 Corylus avellana HOM05D006590 ORTHO05D008427 8.8e-256 887.1 708 64.7
Manes.06G159700 Manihot esculenta HOM05D006590 ORTHO05D008427 1.8e-253 879.4 698 64.9
Ca_16698_v3 Cicer arietinum L. HOM05D006590 ORTHO05D008427 3.1e-253 878.6 713 63.3
CSS0003993 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 5.4e-253 877.9 713 63.4
Actinidia08640 Actinidia chinensis HOM05D006590 ORTHO05D008427 1.6e-252 876.3 712 64.0
Cfa016251 Carpinus fangiana HOM05D006590 ORTHO05D008427 3.5e-252 875.2 708 64.4
CiPaw.05G251800 Carya illinoinensis HOM05D006590 ORTHO05D008427 1.7e-251 872.8 708 63.7
Ciclev10004491m.g Citrus clementina HOM05D006590 ORTHO05D008427 2.3e-251 872.5 709 64.6
Atru.chr1.163 Acer truncatum HOM05D006590 ORTHO05D008427 2.9e-251 872.1 709 63.3
FAN10G1373 Fragaria x ananassa HOM05D006590 ORTHO05D008427 4.2e-250 868.2 710 63.2
vmacro06540 Vaccinium macrocarpon HOM05D006590 ORTHO05D008427 5.5e-250 867.8 708 63.8
Prupe.2G311400 Prunus persica HOM05D006590 ORTHO05D008427 7.2e-250 867.5 709 63.2
FvH4_7g31750 Fragaria vesca HOM05D006590 ORTHO05D008427 9.5e-250 867.1 710 63.4
FAN06G3161 Fragaria x ananassa HOM05D006590 ORTHO05D008427 9.5e-250 867.1 710 63.4
FAN10G2802 Fragaria x ananassa HOM05D006590 ORTHO05D008427 9.5e-250 867.1 710 63.1
FAN06G3878 Fragaria x ananassa HOM05D006590 ORTHO05D008427 8.0e-249 864.0 710 63.2
TWI14G0328 Tripterygium wilfordii HOM05D006590 ORTHO05D008427 2.3e-248 862.4 711 63.3
Rhsim03G0207800 Rhododendron simsii HOM05D006590 ORTHO05D008427 4.0e-248 861.7 710 63.8
TPR.G17286 Trifolium pratense HOM05D006590 ORTHO05D008427 5.2e-248 861.3 711 61.9
GSVIVG01038710001 Vitis vinifera HOM05D006590 ORTHO05D008427 5.2e-248 861.3 714 62.3
Medtr3g091290 Medicago truncatula HOM05D006590 ORTHO05D008427 2.0e-247 859.4 713 61.6
Thecc.03G196200 Theobroma cacao HOM05D006590 ORTHO05D008427 2.6e-247 859.0 707 62.4
Duzib205G0486 Durio zibethinus HOM05D006590 ORTHO05D008427 4.4e-247 858.2 714 62.0
FAN03G2401 Fragaria x ananassa HOM05D006590 ORTHO05D008427 4.4e-247 858.2 710 62.5
Psat5g078080 Pisum sativum HOM05D006590 ORTHO05D008427 7.5e-247 857.4 711 61.9
CANSAT21G0035 Cannabis sativa HOM05D006590 ORTHO05D008427 2.2e-246 855.9 713 61.4
RcHm_v2.0_Chr1g0380971 Rosa chinensis HOM05D006590 ORTHO05D008427 3.7e-246 855.1 715 62.8
Dinv35324 Davidia involucrata HOM05D006590 ORTHO05D008427 4.9e-246 854.7 615 69.8
MD01G1219800 Malus domestica HOM05D006590 ORTHO05D008427 2.4e-245 852.4 659 65.1
Eucgr.A01466 Eucalyptus grandis HOM05D006590 ORTHO05D008427 4.1e-245 851.7 698 63.9
Lalb_Chr08g0240321 Lupinus albus HOM05D006590 ORTHO05D008427 1.2e-244 850.1 710 62.3
arahy.Tifrunner.gnm1.ann1.X012TI Arachis hypogaea HOM05D006590 ORTHO05D008427 2.0e-244 849.4 666 64.4
Nn1g01869 Nelumbo nucifera HOM05D006590 ORTHO05D008427 2.0e-244 849.4 709 62.1
COL.COLO4_11262 Corchorus olitorius HOM05D006590 ORTHO05D008427 2.7e-244 849.0 737 60.5
Potri.015G017100 Populus trichocarpa HOM05D006590 ORTHO05D008427 3.5e-244 848.6 622 67.7
Hma1.2p1_0404F.1_g145500 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 6.6e-243 844.3 626 67.3
Lj1g0007393 Lotus japonicus HOM05D006590 ORTHO05D008427 1.1e-242 843.6 713 61.0
FAN01G1498 Fragaria x ananassa HOM05D006590 ORTHO05D008427 9.5e-242 840.5 721 61.6
Oeu041046.1 Olea europaea HOM05D006590 ORTHO05D008427 1.0e-240 837.0 704 61.9
PSO170G2823 Papaver somniferum HOM05D006590 ORTHO05D008427 1.4e-240 836.6 710 61.5
arahy.Tifrunner.gnm1.ann1.ICGL65 Arachis hypogaea HOM05D006590 ORTHO05D008427 1.8e-240 836.3 682 62.8
PSO063G2913 Papaver somniferum HOM05D006590 ORTHO05D008427 1.8e-240 836.3 712 61.8
Phvul.009G053500 Phaseolus vulgaris HOM05D006590 ORTHO05D008427 2.3e-240 835.9 709 60.9
Glyma.04G236600 Glycine max HOM05D006590 ORTHO05D008427 1.2e-239 833.6 712 61.1
PGR042G1173 Punica granatum HOM05D006590 ORTHO05D008427 1.5e-239 833.2 659 65.4
Glyma.06G127700 Glycine max HOM05D006590 ORTHO05D008427 2.0e-239 832.8 687 62.3
Gohir.D12G251400 Gossypium hirsutum HOM05D006590 ORTHO05D008427 9.8e-239 830.5 711 59.6
Gorai.008G269500 Gossypium raimondii HOM05D006590 ORTHO05D008427 4.9e-238 828.2 711 59.6
VMungo1309G0677 Vigna mungo HOM05D006590 ORTHO05D008427 3.2e-237 825.5 709 60.4
THA.LOC104800297 Tarenaya hassleriana HOM05D006590 ORTHO05D008427 5.4e-237 824.7 712 59.7
ECA232G3273 Erigeron canadensis HOM05D006590 ORTHO05D008427 9.2e-237 823.9 707 59.3
MELO3C008489.2 Cucumis melo HOM05D006590 ORTHO05D008427 4.6e-236 821.6 688 61.9
Sopen03g023190 Solanum pennellii HOM05D006590 ORTHO05D008427 7.8e-236 820.8 703 60.0
Gohir.A12G250600 Gossypium hirsutum HOM05D006590 ORTHO05D008427 1.7e-235 819.7 715 58.9
Sed0010238 Sechium edule HOM05D006590 ORTHO05D008427 5.0e-235 818.1 664 62.3
PGSC0003DMG400009120 Solanum tuberosum HOM05D006590 ORTHO05D008427 8.6e-235 817.4 703 59.9
Aqoxy5G04233 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 3.3e-234 815.5 714 59.1
HanXRQChr09g0250931 Helianthus annuus HOM05D006590 ORTHO05D008427 3.3e-234 815.5 652 62.3
Migut.F00225 Erythranthe guttata HOM05D006590 ORTHO05D008427 9.5e-234 813.9 697 59.0
CAN.G108.67 Capsicum annuum HOM05D006590 ORTHO05D008427 8.0e-233 810.8 660 61.4
CsaV3_3G027870 Cucumis sativus L. HOM05D006590 ORTHO05D008427 8.0e-233 810.8 688 60.5
TAR375G1022 Trochodendron aralioides HOM05D006590 ORTHO05D008427 6.8e-232 807.7 710 60.3
Cc02_g01670 Coffea canephora HOM05D006590 ORTHO05D008427 3.7e-230 802.0 620 64.4
SalBow4G1653 Salvia bowleyana HOM05D006590 ORTHO05D008427 1.2e-228 797.0 715 58.7
BolC9t57211H Brassica oleracea HOM05D006590 ORTHO05D008427 2.3e-227 792.7 663 62.1
Sp6g15580 Schrenkiella parvula HOM05D006590 ORTHO05D008427 2.3e-227 792.7 716 58.7
Thhalv10012882m.g Eutrema salsugineum HOM05D006590 ORTHO05D008427 3.9e-227 792.0 713 58.2
BraA10t43179Z Brassica rapa HOM05D006590 ORTHO05D008427 8.6e-227 790.8 711 58.6
MBI07_g07100_MAGBIO Magnolia biondii HOM05D006590 ORTHO05D008427 1.1e-226 790.4 751 56.3
CARHR266570 Cardamine hirsuta HOM05D006590 ORTHO05D008427 2.1e-225 786.2 668 61.5
Carub.0008s1361 Capsella rubella HOM05D006590 ORTHO05D008427 5.2e-224 781.6 667 60.7
AL8G28150 Arabidopsis lyrata HOM05D006590 ORTHO05D008427 1.5e-223 780.0 666 60.5
Peaxi162Scf00550g00546 Petunia axillaris HOM05D006590 ORTHO05D008427 3.4e-223 778.9 661 59.8
Aa31LG3G9610 Aethionema arabicum HOM05D006590 ORTHO05D008427 1.7e-222 776.5 663 60.6
Nitab4.5_0000714g0140 Nicotiana tabacum HOM05D006590 ORTHO05D008427 3.9e-219 765.4 701 57.8
HPP92_006416 Vanilla planifolia HOM05D006590 ORTHO05D008427 3.6e-217 758.8 671 58.1
A10p10910 Brassica napus HOM05D001108 ORTHO05D001619 4.7e-217 758.4 688 58.3
C09p43300 Brassica napus HOM05D001108 ORTHO05D001619 6.8e-216 754.6 640 61.4
DCAR_014541 Daucus carota HOM05D006590 ORTHO05D008427 7.6e-215 751.1 631 60.1
Os01g0655500 Oryza sativa ssp. japonica HOM05D006590 ORTHO05D008427 4.2e-213 745.3 663 56.9
SGA_v2.0_scaffold44G16790 Striga asiatica HOM05D006590 ORTHO05D008427 1.0e-211 740.7 681 56.8
Potri.015G016801 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.5e-210 736.1 625 61.8
CSS0014515 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 3.3e-210 735.7 579 64.8
BcaB08g35710 Brassica carinata HOM05D006590 ORTHO05D008427 7.3e-210 734.6 700 57.6
Lsat_1_v5_gn_5_75160 Lactuca sativa HOM05D006590 ORTHO05D008427 3.1e-208 729.2 697 56.0
ATR0602G100 Amborella trichopoda HOM05D006590 ORTHO05D008427 9.9e-207 724.2 656 57.8
Nitab4.5_0007081g0010 Nicotiana tabacum HOM05D006590 ORTHO05D008427 9.3e-197 691.0 701 54.1
Solyc03g083420.4 Solanum lycopersicum HOM05D006590 ORTHO05D008427 6.7e-195 684.9 573 60.9
SEGI_37244 Sequoiadendron giganteum HOM05D006590 ORTHO05D008427 6.2e-193 678.3 685 54.5
Hma1.2p1_0404F.1_g145510 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 2.0e-191 673.3 501 67.1
Cpa.g.sc3.70 Carica papaya HOM05D006590 ORTHO05D008427 6.9e-176 621.7 709 49.8
Lj1C1015G5 Lonicera japonica HOM05D006590 ORTHO05D008427 7.7e-167 591.7 698 48.4
unitig_899.g15485 Utricularia gibba HOM05D006590 ORTHO05D008427 1.0e-166 591.3 630 49.7
Mapoly0022s0163 Marchantia polymorpha HOM05D006590 ORTHO05D008427 7.9e-164 581.6 691 46.3
AT5G53450 Arabidopsis thaliana HOM05D006590 ORTHO05D008427 5.5e-157 558.9 458 63.1
ClCG05G008870 Citrullus lanatus HOM05D006590 ORTHO05D008427 1.4e-152 544.3 459 62.1
SMO172G0068 Selaginella moellendorffii HOM05D006590 ORTHO05D008427 5.0e-150 535.8 666 46.1
Zm00001eb158040 Zea mays HOM05D006590 ORTHO05D008427 2.7e-143 513.5 396 63.6
SalBow4G1387 Salvia bowleyana HOM05D006590 ORTHO05D008427 8.3e-129 465.3 398 57.8
Sabra15G0013100 Salix brachista HOM05D006590 ORTHO05D008427 1.9e-93 347.8 255 71.0
CBR_g39728 Chara braunii HOM05D006590 ORTHO05D008427 3.2e-88 330.5 662 33.4
Potri.015G016500 Populus trichocarpa HOM05D006590 ORTHO05D008427 3.0e-70 270.8 231 58.4
Actinidia33527 Actinidia chinensis HOM05D006590 ORTHO05D008427 4.3e-69 266.9 384 42.4
Potri.015G016600 Populus trichocarpa HOM05D006590 ORTHO05D008427 8.5e-57 226.1 158 70.3
Hund04856 Selenicereus undatus HOM05D006590 ORTHO05D008427 6.5e-49 199.9 182 58.8
BcaC04g19592 Brassica carinata HOM05D006590 ORTHO05D008427 2.2e-44 184.9 122 74.6
Potri.015G016375 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.7e-41 175.3 144 61.8
Sabra15G0012800 Salix brachista HOM05D006590 ORTHO05D008427 2.0e-37 161.8 149 55.0
Potri.015G016300 Populus trichocarpa HOM05D006590 ORTHO05D008427 4.1e-35 154.1 178 50.6
COL.COLO4_02893 Corchorus olitorius HOM05D006590 ORTHO05D008427 5.0e-25 120.6 61 91.8
Actinidia34212 Actinidia chinensis HOM05D006590 ORTHO05D008427 2.8e-20 104.8 113 50.4
CDE10G1176 Ceratophyllum demersum HOM05D006590 ORTHO05D008427 3.7e-20 104.4 113 53.1
Hma1.2p1_0404F.1_g145520 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 1.5e-16 92.4 62 69.4
Lsat_1_v5_gn_2_64600 Lactuca sativa HOM05D006590 ORTHO05D011991 1.6e-15 89.0 58 69.0
Aqoxy2G01300 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 1.7e-09 68.9 38 76.3
Hund25103 Selenicereus undatus HOM05D002406 ORTHO05D007964 9.5e-08 63.2 332 20.8
CDE09G1163 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 1.2e-07 62.8 337 20.8
Pp3c4_25980 Physcomitrium patens HOM05D002406 ORTHO05D007964 2.1e-07 62.0 360 21.7
COL.COLO4_07869 Corchorus olitorius HOM05D002406 ORTHO05D007964 3.6e-07 61.2 338 21.9
THA.LOC104808195 Tarenaya hassleriana HOM05D002406 ORTHO05D007964 3.6e-07 61.2 281 23.5
unitig_52.g17148 Utricularia gibba HOM05D002406 ORTHO05D007964 3.6e-07 61.2 337 22.0
Sabra10G0098600 Salix brachista HOM05D002406 ORTHO05D007964 4.7e-07 60.8 338 22.5
CAN.G430.6 Capsicum annuum HOM05D002406 ORTHO05D007964 6.2e-07 60.5 280 22.5
Potri.008G116800 Populus trichocarpa HOM05D002406 ORTHO05D007964 6.2e-07 60.5 339 23.6
MBI13_g34060_MAGBIO Magnolia biondii HOM05D002406 ORTHO05D007964 8.0e-07 60.1 374 19.8
CAN.G37.10 Capsicum annuum HOM05D006590 ORTHO05D008427 1.8e-06 58.9 53 50.9
FvH4_4g28080 Fragaria vesca HOM05D002406 ORTHO05D007964 1.8e-06 58.9 281 23.8
Nitab4.5_0000597g0020 Nicotiana tabacum HOM05D002406 ORTHO05D007964 1.8e-06 58.9 281 22.8
CSS0033832 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 2.3e-06 58.5 199 24.6
CSS0035809 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 2.3e-06 58.5 199 24.6
FAN07G2527 Fragaria x ananassa HOM05D002406 ORTHO05D007964 2.3e-06 58.5 281 23.8
FAN12G2143 Fragaria x ananassa HOM05D002406 ORTHO05D007964 2.3e-06 58.5 255 23.9
Phvul.003G027300 Phaseolus vulgaris HOM05D002406 ORTHO05D007964 2.3e-06 58.5 316 19.9
Thecc.02G360900 Theobroma cacao HOM05D002406 ORTHO05D007964 2.3e-06 58.5 339 21.8
Pp3c26_5140 Physcomitrium patens HOM05D002406 ORTHO05D007964 3.1e-06 58.2 328 23.2
Oeu022120.1 Olea europaea HOM05D002406 ORTHO05D007964 4.0e-06 57.8 281 23.1
BcaC08g46333 Brassica carinata HOM05D002406 ORTHO05D007964 5.2e-06 57.4 292 23.3
Migut.K01266 Erythranthe guttata HOM05D002406 ORTHO05D007964 5.2e-06 57.4 311 21.9
Sc04g0006710 Simmondsia chinensis HOM05D002406 ORTHO05D007964 5.2e-06 57.4 281 21.7
BcaB03g15855 Brassica carinata HOM05D002406 ORTHO05D007964 6.8e-06 57.0 281 23.8
Sp5g23940 Schrenkiella parvula HOM05D002406 ORTHO05D007964 8.9e-06 56.6 281 22.8


User provided reference genes

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