Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.8e-48 195.7 103 100.0
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 8.3e-46 186.8 103 95.1
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 7.5e-31 137.1 103 78.6
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 5.6e-26 120.9 103 67.0
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 9.5e-26 120.2 106 63.2
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.8e-25 118.6 111 62.2
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.1e-24 116.7 108 62.0
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 5.2e-24 114.4 107 64.5
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.6e-23 112.1 106 60.4
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 4.4e-23 111.3 104 62.5
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 7.6e-23 110.5 108 60.2
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 9.9e-23 110.2 107 64.5
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.7e-22 109.4 109 62.4
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.9e-22 108.6 111 63.1
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 4.9e-22 107.8 109 61.5
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 6.4e-22 107.5 104 64.4
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 8.4e-22 107.1 110 60.0
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 8.4e-22 107.1 107 58.9
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.4e-21 106.3 109 60.6
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.9e-21 105.9 105 59.0
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.4e-21 105.5 106 54.7
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.4e-21 105.5 106 54.7
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.4e-21 105.5 105 58.1
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 4.2e-21 104.8 108 58.3
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 4.2e-21 104.8 108 60.2
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 4.2e-21 104.8 108 57.4
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.4e-21 104.4 110 56.4
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 7.1e-21 104.0 111 61.3
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 9.2e-21 103.6 111 59.5
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 1.6e-20 102.8 104 56.7
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-20 102.4 103 63.1
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.7e-20 102.1 105 58.1
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 4.6e-20 101.3 103 55.3
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 6.0e-20 100.9 104 57.7
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 7.8e-20 100.5 104 54.8
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.0e-19 100.1 108 54.6
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.0e-19 100.1 105 54.3
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-19 99.8 104 55.8
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-19 99.8 104 55.8
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.7e-19 99.4 102 61.8
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.7e-19 99.4 102 61.8
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.7e-19 99.4 102 61.8
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.3e-19 99.0 105 57.1
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 2.3e-19 99.0 116 56.0
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 2.3e-19 99.0 107 53.3
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.3e-19 99.0 111 55.9
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 3.9e-19 98.2 104 54.8
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.9e-19 98.2 104 55.8
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 5.1e-19 97.8 104 55.8
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 6.6e-19 97.4 111 57.7
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 6.6e-19 97.4 108 52.8
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 8.7e-19 97.1 110 58.2
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 8.7e-19 97.1 115 55.7
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.1e-18 96.7 104 59.6
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.5e-18 96.3 109 57.8
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.5e-18 96.3 105 57.1
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.5e-18 96.3 108 53.7
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 2.5e-18 95.5 109 56.0
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 4.3e-18 94.7 108 53.7
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 4.3e-18 94.7 104 54.8
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 5.6e-18 94.4 109 56.0
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 5.6e-18 94.4 115 52.2
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 7.3e-18 94.0 101 52.5
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 7.3e-18 94.0 105 52.4
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 9.6e-18 93.6 104 55.8
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 9.6e-18 93.6 105 52.4
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 9.6e-18 93.6 105 52.4
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.6e-17 92.8 105 60.0
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.6e-17 92.8 90 60.0
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.6e-17 92.8 107 53.3
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 2.1e-17 92.4 107 57.0
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.1e-17 92.4 112 54.5
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 2.8e-17 92.0 111 56.8
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.8e-17 92.0 101 53.5
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.8e-17 92.0 109 58.7
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 2.8e-17 92.0 103 55.3
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.8e-17 92.0 105 57.1
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.6e-17 91.7 101 52.5
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 4.8e-17 91.3 107 55.1
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 6.2e-17 90.9 108 50.0
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 8.1e-17 90.5 107 58.9
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 8.1e-17 90.5 107 58.9
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 8.1e-17 90.5 107 58.9
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 53.2
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.1e-16 90.1 111 55.0
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.1e-16 90.1 103 51.5
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-16 89.7 104 55.8
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.4e-16 89.7 110 55.5
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.4e-16 89.0 112 50.9
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 4.0e-16 88.2 103 55.3
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 4.0e-16 88.2 104 54.8
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 5.3e-16 87.8 107 48.6
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 9.0e-16 87.0 109 52.3
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 9.0e-16 87.0 106 50.9
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 9.0e-16 87.0 106 54.7
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.2e-15 86.7 107 50.5
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.2e-15 86.7 111 53.2
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.5e-15 86.3 100 51.0
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 2.6e-15 85.5 110 46.4
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 3.4e-15 85.1 104 51.9
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 4.4e-15 84.7 94 62.8
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 4.4e-15 84.7 108 51.9
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 7.6e-15 84.0 110 52.7
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 9.9e-15 83.6 109 50.5
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 9.9e-15 83.6 109 50.5
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 9.9e-15 83.6 109 52.3
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.3e-14 83.2 104 53.8
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.3e-14 83.2 108 50.0
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 2.2e-14 82.4 113 51.3
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 2.9e-14 82.0 107 56.1
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 3.8e-14 81.6 101 52.5
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 4.9e-14 81.3 105 46.7
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.9e-14 81.3 106 51.9
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 4.9e-14 81.3 102 49.0
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 8.4e-14 80.5 104 51.0
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 8.4e-14 80.5 104 51.0
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 8.4e-14 80.5 104 51.0
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.1e-13 80.1 114 47.4
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.1e-13 80.1 114 47.4
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.4e-13 79.7 94 56.4
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 1.9e-13 79.3 107 49.5
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 3.2e-13 78.6 95 51.6
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 9.3e-13 77.0 78 57.7
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.2e-12 76.6 107 47.7
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 2.7e-12 75.5 101 47.5
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 4.6e-12 74.7 106 49.1
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 6.0e-12 74.3 113 46.0
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 3.9e-11 71.6 114 45.6
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 8.7e-11 70.5 107 46.7
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.1e-10 70.1 94 47.9
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.9e-10 69.3 106 44.3
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 5.6e-10 67.8 108 44.4
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 7.3e-10 67.4 105 47.6
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 9.6e-10 67.0 100 52.0
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.1e-09 65.9 104 43.3
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.1e-09 65.9 116 42.2
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 2.8e-09 65.5 105 47.6
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 2.8e-09 65.5 117 45.3
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 3.6e-09 65.1 120 44.2
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 4.8e-09 64.7 38 76.3
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 6.2e-09 64.3 120 40.0
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 8.1e-09 63.9 104 43.3
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 8.1e-09 63.9 37 83.8
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 8.1e-09 63.9 117 45.3
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.1e-08 63.5 88 51.1
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 1.4e-08 63.2 115 41.7
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 1.4e-08 63.2 94 54.3
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.1e-08 62.0 106 45.3
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.1e-08 62.0 38 76.3
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 4.0e-08 61.6 36 83.3
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 5.3e-08 61.2 111 40.5
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 1.2e-07 60.1 107 39.3
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.5e-07 59.7 41 73.2
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 3.4e-07 58.5 97 45.4
A03p43270 Brassica napus HOM05D046874 ORTHO05D042050 5.8e-07 57.8 62 50.0
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 7.6e-07 57.4 38 76.3
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 1.7e-06 56.2 105 38.1
CBR_g18875 Chara braunii HOM05D024154 ORTHO05D023530 4.9e-06 54.7 111 37.8
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 6.4e-06 54.3 109 42.2
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.4e-06 53.9 107 41.1


User provided reference genes

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