Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.6e-258 894.8 428 100.0
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 6.0e-215 750.7 375 94.9
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 7.9e-183 644.0 385 81.8
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 6.9e-171 604.4 386 78.5
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.0e-162 576.2 343 84.0
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 8.8e-158 560.8 379 73.1
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 2.0e-157 559.7 375 72.8
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 5.7e-157 558.1 370 74.3
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 9.7e-157 557.4 396 71.2
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.7e-156 556.6 378 73.3
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 2.2e-156 556.2 338 78.4
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 3.7e-156 555.4 392 69.6
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 6.3e-156 554.7 369 73.7
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 2.0e-154 549.7 394 70.1
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 2.6e-154 549.3 383 71.8
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 3.5e-154 548.9 405 67.7
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 7.7e-154 547.7 386 72.0
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.7e-153 546.6 387 71.3
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.7e-153 546.6 393 69.2
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 3.8e-153 545.4 394 69.5
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 5.0e-153 545.0 326 80.1
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 6.5e-153 544.7 326 80.1
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 6.5e-153 544.7 385 71.2
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 6.5e-153 544.7 327 80.4
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 8.5e-153 544.3 373 73.2
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 8.5e-153 544.3 373 73.2
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 2.5e-152 542.7 393 68.4
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 4.2e-152 542.0 326 79.8
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 5.5e-152 541.6 385 70.6
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 7.2e-152 541.2 395 69.6
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 7.2e-152 541.2 378 68.5
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 9.4e-152 540.8 374 71.4
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 1.6e-151 540.0 372 69.4
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.6e-151 540.0 383 68.9
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.6e-151 540.0 393 68.2
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.1e-151 539.7 400 68.2
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 2.1e-151 539.7 362 74.9
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 2.7e-151 539.3 391 69.6
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 3.6e-151 538.9 338 76.3
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 8.0e-151 537.7 306 83.0
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.0e-150 537.3 383 70.5
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 1.4e-150 537.0 389 67.6
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.4e-150 537.0 383 70.5
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 1.4e-150 537.0 390 66.9
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.8e-150 536.6 383 70.2
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 2.3e-150 536.2 384 69.5
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 4.0e-150 535.4 384 69.3
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 8.8e-150 534.3 394 67.8
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 8.8e-150 534.3 341 76.0
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.2e-149 533.9 394 67.8
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.5e-149 533.5 383 69.7
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.0e-149 533.1 378 70.6
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.6e-149 532.7 383 68.7
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 9.7e-149 530.8 431 63.8
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 9.7e-149 530.8 392 67.6
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.3e-148 530.4 391 68.0
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.7e-148 530.0 391 69.1
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 3.7e-148 528.9 393 67.4
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 4.8e-148 528.5 383 69.5
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 6.3e-148 528.1 399 67.9
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 6.3e-148 528.1 361 73.1
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 8.2e-148 527.7 384 69.3
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.4e-147 526.9 345 74.5
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.8e-147 526.6 395 66.1
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 7.0e-147 524.6 337 73.9
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 7.0e-147 524.6 393 67.9
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 7.0e-147 524.6 314 78.3
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 2.7e-146 522.7 385 69.1
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.7e-146 522.7 410 65.9
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 2.7e-146 522.7 392 67.9
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 4.5e-146 521.9 384 66.9
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 7.7e-146 521.2 383 67.6
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 3.8e-145 518.8 323 75.9
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 3.8e-145 518.8 326 76.7
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 5.0e-145 518.5 395 65.1
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 1.1e-144 517.3 389 65.0
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 2.5e-144 516.2 395 66.3
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.2e-143 513.8 343 72.9
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 6.1e-143 511.5 417 62.1
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 1.0e-142 510.8 384 69.3
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 1.0e-142 510.8 311 77.2
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 1.8e-142 510.0 311 77.8
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 4.0e-142 508.8 395 66.3
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 1.5e-141 506.9 315 75.9
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 1.5e-141 506.9 316 76.3
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 2.6e-141 506.1 382 68.3
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 3.4e-141 505.8 342 71.3
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 4.4e-141 505.4 316 75.9
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 9.8e-141 504.2 311 76.8
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 1.3e-140 503.8 311 76.8
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.3e-140 503.8 315 75.6
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.2e-140 503.1 330 72.7
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 2.8e-140 502.7 312 76.9
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 3.7e-140 502.3 316 75.3
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 6.3e-140 501.5 315 75.2
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 6.3e-140 501.5 316 75.0
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 6.3e-140 501.5 316 75.0
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.8e-139 500.0 298 78.2
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 3.1e-139 499.2 314 75.2
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 3.1e-139 499.2 331 75.2
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 9.1e-139 497.7 386 61.9
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 2.7e-138 496.1 317 74.8
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 3.5e-138 495.7 282 83.3
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 5.9e-138 495.0 303 77.2
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 5.9e-138 495.0 303 77.2
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 5.9e-138 495.0 298 77.5
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.2e-135 487.3 343 69.7
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 3.0e-134 482.6 304 75.0
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 4.0e-134 482.3 328 69.5
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 5.2e-134 481.9 372 66.9
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 5.2e-134 481.9 372 66.9
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 3.4e-133 479.2 311 74.0
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 9.8e-133 477.6 372 66.4
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 2.8e-132 476.1 337 68.0
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 8.3e-132 474.6 299 73.9
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-130 470.7 384 64.1
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 7.3e-128 461.5 299 70.9
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 9.5e-128 461.1 299 70.6
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 2.8e-127 459.5 311 71.7
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-126 457.6 309 71.8
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 1.8e-126 456.8 269 79.9
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 2.0e-125 453.4 299 69.9
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 7.5e-125 451.4 288 74.7
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 9.2e-123 444.5 330 67.0
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.9e-120 436.8 297 67.7
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 5.6e-120 435.3 263 77.9
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 4.1e-115 419.1 330 64.2
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 2.1e-114 416.8 411 56.9
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.2e-109 401.0 335 63.6
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 9.9e-109 397.9 314 58.6
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.8e-103 379.8 307 59.9
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.6e-98 364.0 288 59.4
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 6.2e-95 352.1 341 56.0
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 2.6e-93 346.7 235 71.5
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.1e-87 327.0 188 81.9
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 8.1e-87 325.1 183 84.7
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 3.4e-85 319.7 212 75.0
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 2.4e-83 313.5 361 51.0
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 1.9e-72 277.3 275 54.9
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 4.8e-63 246.1 143 78.3
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 5.3e-62 242.7 305 46.6
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.5e-59 233.8 131 82.4
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.4e-57 228.0 326 42.3
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 7.4e-56 222.2 235 53.2
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-53 214.9 232 52.6
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 9.7e-48 195.3 295 41.0
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 4.5e-45 186.4 116 74.1
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.0e-44 185.3 180 56.7
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-41 174.9 180 55.6
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-41 174.9 180 55.6
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-40 171.4 122 71.3
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-31 141.0 159 51.6
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-31 141.0 159 51.6
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 4.8e-31 139.8 231 39.4
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.7e-28 131.3 116 58.6
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 1.3e-20 105.1 169 37.9
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 1.4e-17 95.1 82 54.9
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 5.2e-17 93.2 53 73.6
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 8.3e-15 85.9 51 80.4
Ca_28728_v3 Cicer arietinum L. HOM05D004356 ORTHO05D148060 6.4e-07 59.7 229 28.4


User provided reference genes

Program Settings