Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 2.7e-117 425.2 202 100.0
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.3e-114 416.4 202 97.0
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 4.4e-107 391.3 202 90.6
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 2.2e-103 379.0 201 87.1
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 1.2e-96 356.7 202 79.7
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 5.0e-95 351.3 202 79.2
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 6.5e-95 350.9 202 79.2
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.9e-94 349.4 202 79.2
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 4.2e-94 348.2 202 79.2
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 4.2e-94 348.2 202 79.2
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 4.2e-94 348.2 202 78.7
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 4.2e-94 348.2 202 79.2
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 4.2e-94 348.2 202 78.7
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.5e-94 347.8 202 80.2
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 5.5e-94 347.8 202 78.7
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 7.2e-94 347.4 202 78.2
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 9.4e-94 347.1 202 80.2
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 1.2e-93 346.7 202 78.7
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 2.1e-93 345.9 201 78.6
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 2.1e-93 345.9 202 77.7
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 2.7e-93 345.5 202 77.7
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 3.6e-93 345.1 201 75.6
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 4.7e-93 344.7 201 77.1
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 4.7e-93 344.7 202 77.7
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 4.7e-93 344.7 202 77.7
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 6.1e-93 344.4 202 77.7
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 6.1e-93 344.4 202 78.2
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 6.1e-93 344.4 202 80.2
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 6.1e-93 344.4 202 77.2
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 1.4e-92 343.2 202 79.7
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 1.8e-92 342.8 201 78.1
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 1.8e-92 342.8 202 78.7
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.8e-92 342.8 202 77.7
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 2.3e-92 342.4 202 77.2
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 2.3e-92 342.4 202 76.2
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 2.3e-92 342.4 202 77.2
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 3.0e-92 342.0 202 79.2
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 3.0e-92 342.0 201 77.1
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 4.0e-92 341.7 202 75.7
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 4.0e-92 341.7 202 77.2
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 4.0e-92 341.7 202 76.7
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 5.2e-92 341.3 201 77.6
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 5.2e-92 341.3 202 77.2
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 5.2e-92 341.3 201 77.1
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 6.8e-92 340.9 202 77.2
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 8.8e-92 340.5 202 77.7
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 8.8e-92 340.5 202 76.7
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 8.8e-92 340.5 202 76.7
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 8.8e-92 340.5 201 76.6
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 8.8e-92 340.5 202 76.7
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 1.2e-91 340.1 202 76.7
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 2.0e-91 339.3 202 77.2
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 2.0e-91 339.3 202 76.2
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 2.0e-91 339.3 202 77.2
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 2.6e-91 339.0 202 75.2
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 2.6e-91 339.0 202 77.7
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.6e-91 339.0 202 76.2
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 3.4e-91 338.6 202 77.7
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 4.4e-91 338.2 201 76.6
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 4.4e-91 338.2 202 78.7
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 5.7e-91 337.8 202 76.2
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 7.5e-91 337.4 202 77.2
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 7.5e-91 337.4 202 76.2
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 7.5e-91 337.4 201 77.6
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 7.5e-91 337.4 201 75.6
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 9.7e-91 337.0 202 77.2
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 9.7e-91 337.0 202 76.7
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.7e-90 336.3 195 80.0
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 2.8e-90 335.5 202 75.2
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 3.7e-90 335.1 202 76.2
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 6.3e-90 334.3 202 75.7
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 6.3e-90 334.3 202 76.7
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 8.3e-90 334.0 202 75.7
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 1.1e-89 333.6 201 75.1
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 1.4e-89 333.2 201 74.6
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 1.8e-89 332.8 201 77.1
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 1.8e-89 332.8 202 75.7
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 4.1e-89 331.6 201 75.6
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 4.1e-89 331.6 202 75.7
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 7.0e-89 330.9 201 73.6
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 1.6e-88 329.7 202 76.2
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 4.5e-88 328.2 201 73.6
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 5.9e-88 327.8 200 73.5
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 7.7e-88 327.4 201 73.1
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.3e-87 326.6 227 70.0
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 1.5e-86 323.2 201 71.1
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.2e-86 322.0 191 77.0
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 4.2e-86 321.6 226 66.8
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 4.2e-86 321.6 201 71.6
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 7.2e-86 320.9 231 68.0
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 4.7e-85 318.2 201 73.1
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.2e-83 313.5 202 72.3
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 2.0e-83 312.8 202 72.3
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.6e-83 312.4 190 75.3
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 2.8e-82 308.9 202 72.8
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 6.3e-82 307.8 206 72.3
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 1.4e-81 306.6 228 65.4
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 3.1e-81 305.4 254 61.0
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 2.0e-80 302.8 181 75.7
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 4.0e-76 288.5 201 66.2
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 2.2e-74 282.7 191 69.1
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 4.9e-74 281.6 204 64.2
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 2.0e-72 276.2 161 80.1
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 5.0e-71 271.6 203 65.0
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 5.0e-71 271.6 203 65.0
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 4.3e-70 268.5 165 73.9
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.3e-63 246.9 202 61.9
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 3.1e-60 235.7 200 56.0
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 3.3e-54 215.7 220 47.3
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 7.3e-54 214.5 158 67.1
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 4.3e-46 188.7 216 44.0
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 4.6e-40 168.7 97 80.4
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 6.2e-37 158.3 162 53.1
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 9.0e-36 154.5 97 74.2
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.7e-34 150.2 194 45.4
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 5.1e-31 138.7 81 74.1
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 6.2e-29 131.7 66 83.3
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 6.4e-26 121.7 98 57.1
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 3.0e-15 86.3 64 59.4
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 3.7e-13 79.3 56 60.7
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.9e-12 75.1 50 72.0
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 2.9e-10 69.7 50 66.0
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 1.8e-07 60.5 48 56.2
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 5.1e-07 58.9 33 72.7
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 1.1e-06 57.8 55 50.9
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 1.1e-06 57.8 55 50.9
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 1.1e-06 57.8 55 50.9


User provided reference genes

Program Settings