Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018491 Chenopodium quinoa HOM05D007934 ORTHO05D010879 5.3e-162 574.3 294 100.0
AUR62026200 Chenopodium quinoa HOM05D007934 ORTHO05D010067 9.6e-156 553.5 293 96.6
EL10Ac3g07401 Beta vulgaris HOM05D010496 ORTHO05D010879 5.7e-31 139.0 228 40.4
Ah.04g149820 Amaranthus hybridus HOM05D007934 ORTHO05D010067 2.6e-20 103.6 68 82.4
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 1.3e-19 101.3 219 35.2
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 1.7e-19 100.9 266 28.9
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 1.6e-17 94.4 221 34.4
Gohir.A09G209500 Gossypium hirsutum HOM05D010496 ORTHO05D010879 2.1e-17 94.0 186 32.8
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 6.1e-17 92.4 198 30.8
Gorai.006G226800 Gossypium raimondii HOM05D010496 ORTHO05D010879 7.9e-17 92.0 186 32.3
Gohir.D09G202900 Gossypium hirsutum HOM05D010496 ORTHO05D010879 1.8e-16 90.9 186 31.7
Medtr1g116100 Medicago truncatula HOM05D011141 ORTHO05D010879 1.8e-16 90.9 180 34.4
Prupe.1G176100 Prunus persica HOM05D010496 ORTHO05D010879 3.0e-16 90.1 235 29.8
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 1.1e-15 88.2 246 31.7
GSVIVG01031653001 Vitis vinifera HOM05D010496 ORTHO05D010879 1.5e-15 87.8 268 30.2
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 4.4e-15 86.3 64 68.8
COL.COLO4_06792 Corchorus olitorius HOM05D007934 ORTHO05D010067 7.4e-15 85.5 68 70.6
FvH4_4g12460 Fragaria vesca HOM05D007934 ORTHO05D010067 1.7e-14 84.3 68 64.7
FAN12G0351 Fragaria x ananassa HOM05D007934 ORTHO05D010067 1.7e-14 84.3 68 64.7
ClCG08G003680 Citrullus lanatus HOM05D007934 ORTHO05D010067 2.2e-14 84.0 64 68.8
Medtr7g021860 Medicago truncatula HOM05D007934 ORTHO05D010067 2.2e-14 84.0 64 65.6
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 2.2e-14 84.0 178 31.5
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 2.8e-14 83.6 224 27.2
QL06p027793 Quercus lobata HOM05D007934 ORTHO05D010067 2.8e-14 83.6 68 67.6
FAN17G0103 Fragaria x ananassa HOM05D007934 ORTHO05D010067 3.7e-14 83.2 68 63.2
MD04G1026500 Malus domestica HOM05D010496 ORTHO05D010879 3.7e-14 83.2 233 27.9
Glyma.09G276700 Glycine max HOM05D007934 ORTHO05D010067 4.8e-14 82.8 63 65.1
Psat3g187720 Pisum sativum HOM05D007934 ORTHO05D010067 4.8e-14 82.8 64 67.2
Atru.chr2.1662 Acer truncatum HOM05D007934 ORTHO05D010067 6.3e-14 82.4 64 68.8
CiPaw.02G060500 Carya illinoinensis HOM05D007934 ORTHO05D010067 6.3e-14 82.4 67 70.1
DCAR_010060 Daucus carota HOM05D007934 ORTHO05D010067 6.3e-14 82.4 64 65.6
Lalb_Chr10g0092091 Lupinus albus HOM05D007934 ORTHO05D010067 8.2e-14 82.0 64 65.6
arahy.Tifrunner.gnm1.ann1.R8V4SK Arachis hypogaea HOM05D011141 ORTHO05D010879 1.1e-13 81.6 253 28.9
Cfa008702 Carpinus fangiana HOM05D007934 ORTHO05D010067 1.1e-13 81.6 68 66.2
Duzib268G0160 Durio zibethinus HOM05D007934 ORTHO05D010067 1.1e-13 81.6 68 66.2
Solyc09g098115.1 Solanum lycopersicum HOM05D007934 ORTHO05D010067 1.1e-13 81.6 64 67.2
Sopen09g036060 Solanum pennellii HOM05D007934 ORTHO05D010067 1.1e-13 81.6 64 67.2
PGSC0003DMG400006568 Solanum tuberosum HOM05D007934 ORTHO05D010067 1.1e-13 81.6 64 67.2
Manes.13G117300 Manihot esculenta HOM05D007934 ORTHO05D010067 1.4e-13 81.3 68 63.2
Dinv27156 Davidia involucrata HOM05D007934 ORTHO05D010067 1.8e-13 80.9 68 63.2
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 1.8e-13 80.9 192 32.3
Sabra14G0111200 Salix brachista HOM05D007934 ORTHO05D010067 1.8e-13 80.9 68 64.7
VMungo0720G2993 Vigna mungo HOM05D011141 ORTHO05D010879 1.8e-13 80.9 193 33.7
Atru.chr2.1676 Acer truncatum HOM05D007934 ORTHO05D010067 3.1e-13 80.1 64 67.2
Lj1g0008563 Lotus japonicus HOM05D007934 ORTHO05D010067 3.1e-13 80.1 63 65.1
Phvul.008G084200 Phaseolus vulgaris HOM05D007934 ORTHO05D010067 3.1e-13 80.1 63 63.5
Thecc.04G186900 Theobroma cacao HOM05D010496 ORTHO05D010879 3.1e-13 80.1 182 32.4
Thecc.04G187000 Theobroma cacao HOM05D007934 ORTHO05D010067 3.1e-13 80.1 68 63.2
arahy.Tifrunner.gnm1.ann1.P32IB9 Arachis hypogaea HOM05D011141 ORTHO05D010879 4.1e-13 79.7 234 29.5
Ciclev10033502m.g Citrus clementina HOM05D007934 ORTHO05D010067 4.1e-13 79.7 68 61.8
VMungo1383G3460 Vigna mungo HOM05D007934 ORTHO05D010067 9.1e-13 78.6 63 65.1
Actinidia32959 Actinidia chinensis HOM05D007934 ORTHO05D010067 1.2e-12 78.2 55 76.4
Aqoxy2G00204 Aquilegia oxysepala HOM05D007934 ORTHO05D010067 1.2e-12 78.2 64 62.5
CAN.G681.52 Capsicum annuum HOM05D007934 ORTHO05D010067 1.2e-12 78.2 64 64.1
Glyma.20G243300 Glycine max HOM05D011141 ORTHO05D010879 1.6e-12 77.8 196 29.1
CANSAT78G1949 Cannabis sativa HOM05D007934 ORTHO05D010067 2.0e-12 77.4 64 67.2
MD04G1026300 Malus domestica HOM05D007934 ORTHO05D010067 2.6e-12 77.0 59 71.2
TPR.G10391 Trifolium pratense HOM05D011141 ORTHO05D010879 2.6e-12 77.0 175 33.7
RcHm_v2.0_Chr4g0410771 Rosa chinensis HOM05D007934 ORTHO05D010067 3.5e-12 76.6 68 58.8
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 4.5e-12 76.3 264 28.0
CSS0014535 Camellia sinensis var. sinensis HOM05D007934 ORTHO05D010067 5.9e-12 75.9 64 65.6
MELO3C026115.2 Cucumis melo HOM05D007934 ORTHO05D010067 5.9e-12 75.9 64 59.4
Lj2g0022590 Lotus japonicus HOM05D011141 ORTHO05D010879 5.9e-12 75.9 237 32.5
MBI07_g12253_MAGBIO Magnolia biondii HOM05D007934 ORTHO05D010067 1.0e-11 75.1 68 61.8
Nn1g08266 Nelumbo nucifera HOM05D007934 ORTHO05D010067 1.0e-11 75.1 64 62.5
PGR142G0659 Punica granatum HOM05D007934 ORTHO05D010067 1.3e-11 74.7 68 57.4
Thhalv10009458m.g Eutrema salsugineum HOM05D007934 ORTHO05D010067 1.7e-11 74.3 68 54.4
A06p07590 Brassica napus HOM05D007934 ORTHO05D010067 2.2e-11 73.9 68 52.9
BraA06t23961Z Brassica rapa HOM05D007934 ORTHO05D010067 2.2e-11 73.9 68 52.9
Lsat_1_v5_gn_6_58060 Lactuca sativa HOM05D007934 ORTHO05D010067 2.2e-11 73.9 62 62.9
Prupe.1G176000 Prunus persica HOM05D007934 ORTHO05D010067 2.2e-11 73.9 55 70.9
Prupe.2G050500 Prunus persica HOM05D007934 ORTHO05D010067 2.2e-11 73.9 55 70.9
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 2.9e-11 73.6 266 25.2
CDE02G1388 Ceratophyllum demersum HOM05D007934 ORTHO05D010067 2.9e-11 73.6 64 54.7
BcaC05g24952 Brassica carinata HOM05D007934 ORTHO05D010067 5.0e-11 72.8 68 52.9
Duzib151G0883 Durio zibethinus HOM05D010496 ORTHO05D010879 5.0e-11 72.8 247 29.6
Eucgr.H00465 Eucalyptus grandis HOM05D007934 ORTHO05D010067 6.5e-11 72.4 66 57.6
VMungo0720G3183 Vigna mungo HOM05D011141 ORTHO05D010879 8.5e-11 72.0 178 28.7
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.5e-10 71.2 209 28.7
HanXRQChr11g0341381 Helianthus annuus HOM05D007934 ORTHO05D010067 1.5e-10 71.2 62 61.3
AT1G10800 Arabidopsis thaliana HOM05D007934 ORTHO05D010067 1.9e-10 70.9 111 40.5
Glyma.20G243200 Glycine max HOM05D011141 ORTHO05D010879 1.9e-10 70.9 183 27.9
Potri.014G147600 Populus trichocarpa HOM05D007934 ORTHO05D010067 1.9e-10 70.9 56 69.6
AL1G21730 Arabidopsis lyrata HOM05D007934 ORTHO05D010067 2.5e-10 70.5 68 50.0
CARHR011020 Cardamine hirsuta HOM05D007934 ORTHO05D010067 2.5e-10 70.5 68 48.5
Glyma.10G293000 Glycine max HOM05D011141 ORTHO05D010879 2.5e-10 70.5 215 27.9
C05p09150 Brassica napus HOM05D007934 ORTHO05D010067 3.2e-10 70.1 67 52.2
BolC5t29659H Brassica oleracea HOM05D007934 ORTHO05D010067 3.2e-10 70.1 67 52.2
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 3.2e-10 70.1 229 26.6
PSO675G9246 Papaver somniferum HOM05D061670 ORTHO05D010879 5.5e-10 69.3 64 51.6
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 5.5e-10 69.3 188 30.3
Carub.0001s1035 Capsella rubella HOM05D007934 ORTHO05D010067 7.2e-10 68.9 68 48.5
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.2e-09 68.2 256 26.2
FAN22G0913 Fragaria x ananassa HOM05D010496 ORTHO05D010879 1.2e-09 68.2 264 23.5
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.6e-09 67.8 215 28.4
PSO017G0918 Papaver somniferum HOM05D061670 ORTHO05D010879 1.6e-09 67.8 63 50.8
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 2.1e-09 67.4 206 30.1
Sp1g09500 Schrenkiella parvula HOM05D007934 ORTHO05D010067 2.1e-09 67.4 68 48.5
FAN07G2091 Fragaria x ananassa HOM05D010496 ORTHO05D010879 2.7e-09 67.0 255 23.1
RcHm_v2.0_Chr4g0410661 Rosa chinensis HOM05D010496 ORTHO05D010879 3.6e-09 66.6 274 25.2
Sed0016606 Sechium edule HOM05D010496 ORTHO05D010879 3.6e-09 66.6 189 27.5
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 6.1e-09 65.9 186 29.0
Gohir.A05G327400 Gossypium hirsutum HOM05D007934 ORTHO05D010067 8.0e-09 65.5 53 69.8
Gohir.D05G327600 Gossypium hirsutum HOM05D007934 ORTHO05D010067 8.0e-09 65.5 53 69.8
Gorai.009G351500 Gossypium raimondii HOM05D007934 ORTHO05D010067 8.0e-09 65.5 53 69.8
VMungo0720G1878 Vigna mungo HOM05D011141 ORTHO05D010879 8.0e-09 65.5 183 29.5
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 1.0e-08 65.1 178 34.3
PSO170G0593 Papaver somniferum HOM05D007934 ORTHO05D010067 1.0e-08 65.1 59 62.7
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 1.0e-08 65.1 119 28.6
FvH4_4g12430 Fragaria vesca HOM05D010496 ORTHO05D010879 1.4e-08 64.7 264 23.1
FAN12G2147 Fragaria x ananassa HOM05D010496 ORTHO05D010879 1.4e-08 64.7 264 23.1
THA.LOC104809589 Tarenaya hassleriana HOM05D007934 ORTHO05D010067 1.4e-08 64.7 68 51.5
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.8e-08 64.3 199 26.6
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.8e-08 64.3 221 27.1
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 2.3e-08 63.9 132 34.8
Lalb_Chr06g0164061 Lupinus albus HOM05D011141 ORTHO05D010879 2.3e-08 63.9 168 29.8
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.3e-08 63.9 100 36.0
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 3.0e-08 63.5 230 24.8
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 4.0e-08 63.2 69 43.5
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 4.0e-08 63.2 251 26.7
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 4.0e-08 63.2 251 26.7
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 4.0e-08 63.2 251 26.7
Phvul.007G006900 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 4.0e-08 63.2 164 29.9
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 6.7e-08 62.4 201 25.9
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 8.8e-08 62.0 230 27.4
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 1.2e-07 61.6 173 30.6
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 1.5e-07 61.2 82 40.2
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 1.5e-07 61.2 204 28.9
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.0e-07 60.8 241 25.7
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 2.0e-07 60.8 230 25.7
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 2.0e-07 60.8 222 24.8
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.0e-07 60.8 232 25.0
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 2.6e-07 60.5 234 25.2
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 4.4e-07 59.7 52 50.0
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 4.4e-07 59.7 195 26.7
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 5.7e-07 59.3 136 30.1
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 5.7e-07 59.3 108 34.3
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 5.7e-07 59.3 189 27.0
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.7e-07 59.3 48 54.2
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 7.5e-07 58.9 117 31.6
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 7.5e-07 58.9 143 29.4
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 9.7e-07 58.5 226 25.2
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 9.7e-07 58.5 192 23.4
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 1.3e-06 58.2 113 32.7
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.3e-06 58.2 143 31.5
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 1.3e-06 58.2 213 27.2
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 1.3e-06 58.2 60 43.3
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 1.3e-06 58.2 176 29.0
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 1.7e-06 57.8 52 46.2
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 1.7e-06 57.8 93 36.6
SEGI_13791 Sequoiadendron giganteum HOM05D007934 ORTHO05D010067 1.7e-06 57.8 62 45.2
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-06 57.4 269 23.4
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 2.2e-06 57.4 42 57.1
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 2.2e-06 57.4 96 31.2
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 2.2e-06 57.4 82 37.8
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 2.2e-06 57.4 62 43.5
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.2e-06 57.4 63 44.4
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.8e-06 57.0 258 22.5
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 2.8e-06 57.0 258 22.5
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 2.8e-06 57.0 52 48.1
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 2.8e-06 57.0 143 27.3
Mapoly0034s0074 Marchantia polymorpha HOM05D007934 ORTHO05D010067 2.8e-06 57.0 63 47.6
SEGI_04749 Sequoiadendron giganteum HOM05D003788 ORTHO05D004633 2.8e-06 57.0 47 53.2
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 3.7e-06 56.6 42 57.1
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 3.7e-06 56.6 42 52.4
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 3.7e-06 56.6 120 30.8
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 4.8e-06 56.2 135 29.6
AagrBONN_evm.TU.Sc2ySwM_368.2439 Anthoceros agrestis HOM05D007934 ORTHO05D010067 6.3e-06 55.8 63 44.4
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 6.3e-06 55.8 64 46.9
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 6.3e-06 55.8 99 31.3
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 6.3e-06 55.8 99 31.3
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 6.3e-06 55.8 133 29.3
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 6.3e-06 55.8 79 36.7
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 8.2e-06 55.5 208 26.0
CDE03G0063 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 8.2e-06 55.5 55 47.3
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 8.2e-06 55.5 43 55.8
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 8.2e-06 55.5 59 44.1
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 8.2e-06 55.5 169 27.2
SMO356G0271 Selaginella moellendorffii HOM05D007934 ORTHO05D010067 8.2e-06 55.5 63 42.9
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 8.2e-06 55.5 79 36.7
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 8.2e-06 55.5 79 36.7


User provided reference genes

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