Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018486 Chenopodium quinoa HOM05D000246 ORTHO05D005907 5.0e-128 461.1 227 100.0
AUR62020934 Chenopodium quinoa HOM05D000246 ORTHO05D005907 1.7e-123 446.0 251 90.0
EL10Ac3g07395 Beta vulgaris HOM05D000246 ORTHO05D005907 6.0e-121 437.6 251 88.4
Sc19g0007630 Simmondsia chinensis HOM05D000246 ORTHO05D005907 5.6e-119 431.0 251 86.5
Prupe.1G177100 Prunus persica HOM05D000246 ORTHO05D005907 1.1e-117 426.8 251 84.5
Hund24461 Selenicereus undatus HOM05D000246 ORTHO05D005907 1.4e-117 426.4 251 85.3
Lj3C235G1 Lonicera japonica HOM05D000246 ORTHO05D005907 3.1e-117 425.2 251 84.5
Cc03_g10680 Coffea canephora HOM05D000246 ORTHO05D005907 4.0e-117 424.9 251 84.5
GSVIVG01031659001 Vitis vinifera HOM05D000246 ORTHO05D005907 5.2e-117 424.5 251 84.5
Gohir.D05G327500 Gossypium hirsutum HOM05D000246 ORTHO05D005907 2.6e-116 422.2 251 83.3
Gorai.009G351400 Gossypium raimondii HOM05D000246 ORTHO05D005907 2.6e-116 422.2 251 83.3
Dinv22710 Davidia involucrata HOM05D000246 ORTHO05D005907 3.4e-116 421.8 251 83.7
Peaxi162Scf00378g00062 Petunia axillaris HOM05D000246 ORTHO05D005907 3.4e-116 421.8 251 83.3
Nitab4.5_0000978g0210 Nicotiana tabacum HOM05D000246 ORTHO05D005907 7.5e-116 420.6 251 82.9
CAN.G710.44 Capsicum annuum HOM05D000246 ORTHO05D005907 2.2e-115 419.1 251 82.9
MD04G1027700 Malus domestica HOM05D000246 ORTHO05D005907 2.2e-115 419.1 251 82.1
RcHm_v2.0_Chr4g0410381 Rosa chinensis HOM05D000246 ORTHO05D005907 2.2e-115 419.1 251 83.3
Hma1.2p1_3184F.1_g333720 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 3.7e-115 418.3 249 83.9
Sopen12g033430 Solanum pennellii HOM05D000246 ORTHO05D005907 3.7e-115 418.3 251 83.3
Thecc.04G186400 Theobroma cacao HOM05D000246 ORTHO05D005907 3.7e-115 418.3 251 82.9
DCAR_004354 Daucus carota HOM05D000246 ORTHO05D005907 6.4e-115 417.5 251 82.5
Nitab4.5_0012487g0010 Nicotiana tabacum HOM05D000246 ORTHO05D005907 6.4e-115 417.5 251 82.5
MSTRG.21977 Avicennia marina HOM05D000246 ORTHO05D005907 8.3e-115 417.2 251 82.5
CSS0028322 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005907 8.3e-115 417.2 251 83.3
PGSC0003DMG400004583 Solanum tuberosum HOM05D000246 ORTHO05D005907 8.3e-115 417.2 251 82.9
TWI53G1869 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 8.3e-115 417.2 250 82.8
CiPaw.01G109200 Carya illinoinensis HOM05D000246 ORTHO05D005907 1.1e-114 416.8 251 82.1
Haze_11715 Corylus avellana HOM05D000246 ORTHO05D005907 1.1e-114 416.8 251 81.7
Manes.01G119800 Manihot esculenta HOM05D000246 ORTHO05D005907 1.1e-114 416.8 251 82.9
Aqoxy2G04069 Aquilegia oxysepala HOM05D000246 ORTHO05D005907 1.4e-114 416.4 251 81.3
Cfa008706 Carpinus fangiana HOM05D000246 ORTHO05D005907 1.4e-114 416.4 251 81.7
TWI09G0257 Tripterygium wilfordii HOM05D000246 ORTHO05D005907 1.9e-114 416.0 249 83.1
Migut.N00444 Erythranthe guttata HOM05D000246 ORTHO05D005907 2.4e-114 415.6 251 82.9
Nitab4.5_0006519g0040 Nicotiana tabacum HOM05D000246 ORTHO05D005907 3.2e-114 415.2 251 81.3
Lsat_1_v5_gn_6_32061 Lactuca sativa HOM05D000246 ORTHO05D005907 7.1e-114 414.1 249 82.7
Solyc09g098280.3 Solanum lycopersicum HOM05D000246 ORTHO05D005907 7.1e-114 414.1 251 82.1
PGSC0003DMG400021629 Solanum tuberosum HOM05D000246 ORTHO05D005907 7.1e-114 414.1 251 82.1
Lsat_1_v5_gn_6_71461 Lactuca sativa HOM05D000246 ORTHO05D005907 9.2e-114 413.7 249 82.7
Eucgr.H00462 Eucalyptus grandis HOM05D000246 ORTHO05D005907 1.2e-113 413.3 251 81.3
Manes.02G078000 Manihot esculenta HOM05D000246 ORTHO05D005907 1.6e-113 412.9 251 82.1
Potri.014G147100 Populus trichocarpa HOM05D000246 ORTHO05D005907 1.6e-113 412.9 251 81.3
Sopen09g036210 Solanum pennellii HOM05D000246 ORTHO05D005907 1.6e-113 412.9 251 81.7
MBI07_g06132_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005907 2.1e-113 412.5 251 81.3
Rhsim09G0037600 Rhododendron simsii HOM05D000246 ORTHO05D005907 2.1e-113 412.5 251 82.1
Glyma.02G097300 Glycine max HOM05D000246 ORTHO05D005907 3.5e-113 411.8 251 82.1
SGA_v2.0_scaffold178G39529 Striga asiatica HOM05D000246 ORTHO05D005907 3.5e-113 411.8 251 82.1
ClCG07G015740 Citrullus lanatus HOM05D000246 ORTHO05D005907 4.6e-113 411.4 251 80.9
Gohir.A09G209800 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.6e-113 411.4 251 80.5
Gohir.D09G203200 Gossypium hirsutum HOM05D000246 ORTHO05D005907 4.6e-113 411.4 251 80.5
Phvul.008G017300 Phaseolus vulgaris HOM05D000246 ORTHO05D005907 4.6e-113 411.4 251 81.7
VMungo1383G1353 Vigna mungo HOM05D000246 ORTHO05D005907 4.6e-113 411.4 251 81.7
Gorai.006G227100 Gossypium raimondii HOM05D000246 ORTHO05D005907 6.0e-113 411.0 251 80.5
Ca_07120_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005907 7.8e-113 410.6 251 81.3
CsaV3_4G003350 Cucumis sativus L. HOM05D000246 ORTHO05D005907 7.8e-113 410.6 251 80.5
Glyma.18G284200 Glycine max HOM05D000246 ORTHO05D005907 1.0e-112 410.2 251 81.7
Cpa.g.sc53.167 Carica papaya HOM05D000246 ORTHO05D005907 1.3e-112 409.8 251 81.7
HanXRQChr10g0290061 Helianthus annuus HOM05D000246 ORTHO05D005907 1.3e-112 409.8 251 81.3
Lalb_Chr25g0284231 Lupinus albus HOM05D000246 ORTHO05D005907 1.3e-112 409.8 251 81.3
Psat3g188360 Pisum sativum HOM05D000246 ORTHO05D005907 1.3e-112 409.8 251 81.3
FvH4_4g12310 Fragaria vesca HOM05D000246 ORTHO05D005907 2.3e-112 409.1 251 80.1
FAN12G0598 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.3e-112 409.1 251 80.1
FAN17G0846 Fragaria x ananassa HOM05D000246 ORTHO05D005907 2.3e-112 409.1 251 80.1
PGR142G3194 Punica granatum HOM05D000246 ORTHO05D005907 3.0e-112 408.7 251 80.1
FAN22G2422 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.1e-112 407.9 251 79.7
Nn1g09763 Nelumbo nucifera HOM05D000246 ORTHO05D005907 5.1e-112 407.9 251 80.1
Lalb_Chr10g0092081 Lupinus albus HOM05D000246 ORTHO05D005907 8.6e-112 407.1 249 81.1
PSO017G6996 Papaver somniferum HOM05D000246 ORTHO05D005907 1.1e-111 406.8 251 80.1
PSO675G5278 Papaver somniferum HOM05D000246 ORTHO05D005907 1.1e-111 406.8 251 80.1
arahy.Tifrunner.gnm1.ann1.13067A Arachis hypogaea HOM05D000246 ORTHO05D005907 1.5e-111 406.4 251 80.1
arahy.Tifrunner.gnm1.ann1.N8MPD0 Arachis hypogaea HOM05D000246 ORTHO05D005907 1.5e-111 406.4 251 80.1
arahy.Tifrunner.gnm1.ann1.P7X33L Arachis hypogaea HOM05D000246 ORTHO05D005907 1.5e-111 406.4 251 80.1
Actinidia35924 Actinidia chinensis HOM05D000246 ORTHO05D005907 1.9e-111 406.0 251 80.9
Lj1g0023209 Lotus japonicus HOM05D000246 ORTHO05D005907 2.5e-111 405.6 251 80.1
HPP92_006214 Vanilla planifolia HOM05D000246 ORTHO05D005907 3.3e-111 405.2 251 80.5
Sed0019749 Sechium edule HOM05D000246 ORTHO05D005907 4.3e-111 404.8 251 79.7
FAN07G2572 Fragaria x ananassa HOM05D000246 ORTHO05D005907 5.6e-111 404.4 251 78.9
Sed0019335 Sechium edule HOM05D000246 ORTHO05D005907 5.6e-111 404.4 251 79.7
Medtr7g021870 Medicago truncatula HOM05D000246 ORTHO05D005907 1.2e-110 403.3 249 80.3
THA.LOC104819306 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 1.6e-110 402.9 251 79.7
CANSAT78G0915 Cannabis sativa HOM05D000246 ORTHO05D005907 2.8e-110 402.1 251 79.7
BraA09t41822Z Brassica rapa HOM05D000246 ORTHO05D005907 3.6e-110 401.7 251 78.9
Sp1g09540 Schrenkiella parvula HOM05D000246 ORTHO05D005907 3.6e-110 401.7 251 79.3
unitig_578.g16351 Utricularia gibba HOM05D000246 ORTHO05D005907 6.2e-110 401.0 251 79.3
BcaNung06200 Brassica carinata HOM05D000246 ORTHO05D005907 8.1e-110 400.6 251 78.5
BolC8t52387H Brassica oleracea HOM05D000246 ORTHO05D005907 8.1e-110 400.6 251 78.5
Thhalv10008134m.g Eutrema salsugineum HOM05D000246 ORTHO05D005907 8.1e-110 400.6 251 78.9
Aa31LG1G4010 Aethionema arabicum HOM05D000246 ORTHO05D005907 1.1e-109 400.2 251 78.5
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.8e-109 399.4 251 78.5
A06p07620 Brassica napus HOM05D000246 ORTHO05D005907 1.8e-109 399.4 251 78.5
C08p48480 Brassica napus HOM05D000246 ORTHO05D005907 1.8e-109 399.4 251 78.1
BraA06t23964Z Brassica rapa HOM05D000246 ORTHO05D005907 1.8e-109 399.4 251 78.5
BraA08t35292Z Brassica rapa HOM05D000246 ORTHO05D005907 1.8e-109 399.4 251 78.5
Potri.002G233500 Populus trichocarpa HOM05D000246 ORTHO05D005907 2.3e-109 399.1 251 78.1
Ciclev10005378m.g Citrus clementina HOM05D000246 ORTHO05D005907 3.1e-109 398.7 251 77.7
BcaC05g24965 Brassica carinata HOM05D000246 ORTHO05D005907 4.0e-109 398.3 251 78.1
A08p33760 Brassica napus HOM05D000246 ORTHO05D005907 4.0e-109 398.3 251 78.1
AL1G21780 Arabidopsis lyrata HOM05D000246 ORTHO05D005907 6.8e-109 397.5 251 78.5
C05p09210 Brassica napus HOM05D000246 ORTHO05D005907 8.9e-109 397.1 251 78.1
Carub.0001s1038 Capsella rubella HOM05D000246 ORTHO05D005907 8.9e-109 397.1 251 78.1
THA.LOC104809592 Tarenaya hassleriana HOM05D000246 ORTHO05D005907 8.9e-109 397.1 251 77.7
AT1G10840 Arabidopsis thaliana HOM05D000246 ORTHO05D005907 1.5e-108 396.4 251 78.1
Lj3C238T3 Lonicera japonica HOM05D000246 ORTHO05D005907 2.0e-108 396.0 234 84.2
BcaC07g38591 Brassica carinata HOM05D000246 ORTHO05D005907 4.4e-108 394.8 251 77.7
BolC8t49032H Brassica oleracea HOM05D000246 ORTHO05D005907 4.4e-108 394.8 251 77.7
CDE05G2302 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 7.6e-108 394.0 251 77.3
CARHR011060 Cardamine hirsuta HOM05D000246 ORTHO05D005907 2.9e-107 392.1 251 77.7
A09p64720 Brassica napus HOM05D000246 ORTHO05D005907 8.3e-107 390.6 266 74.1
DCAR_001263 Daucus carota HOM05D000246 ORTHO05D005907 1.9e-106 389.4 236 82.2
CDE05G0298 Ceratophyllum demersum HOM05D000246 ORTHO05D005907 2.4e-106 389.0 251 76.1
Os04g0376500 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005907 4.1e-106 388.3 251 76.1
SalBow6G1195 Salvia bowleyana HOM05D000246 ORTHO05D005907 3.5e-105 385.2 293 68.9
ECA238G0367 Erigeron canadensis HOM05D000246 ORTHO05D005907 7.8e-105 384.0 238 79.8
Zm00001eb420740 Zea mays HOM05D000246 ORTHO05D005907 1.7e-104 382.9 251 75.3
Zm00001eb420800 Zea mays HOM05D000246 ORTHO05D005907 1.7e-104 382.9 251 75.3
Mapoly0149s0014 Marchantia polymorpha HOM05D000246 ORTHO05D005907 8.6e-104 380.6 249 73.5
QL06p027657 Quercus lobata HOM05D000246 ORTHO05D005907 8.6e-104 380.6 232 81.0
SMO201G0006 Selaginella moellendorffii HOM05D000246 ORTHO05D005907 1.5e-103 379.8 251 73.7
Sabra14G0110400 Salix brachista HOM05D000246 ORTHO05D005907 2.5e-103 379.0 248 75.8
Nn7g38282 Nelumbo nucifera HOM05D000246 ORTHO05D005907 7.3e-103 377.5 234 80.8
ATR1147G030 Amborella trichopoda HOM05D000246 ORTHO05D005907 2.8e-102 375.6 232 80.6
FAN12G1501 Fragaria x ananassa HOM05D000246 ORTHO05D005907 1.1e-101 373.6 232 78.9
Dinv44209 Davidia involucrata HOM05D000246 ORTHO05D005907 3.1e-101 372.1 251 76.5
Pp3c25_2440 Physcomitrium patens HOM05D000246 ORTHO05D005907 4.0e-101 371.7 251 72.1
Pp3c6_17230 Physcomitrium patens HOM05D000246 ORTHO05D005907 8.9e-101 370.5 251 72.1
Atru.chr3.1829 Acer truncatum HOM05D000246 ORTHO05D005907 2.6e-100 369.0 232 78.9
Nitab4.5_0001526g0070 Nicotiana tabacum HOM05D000246 ORTHO05D005907 2.6e-100 369.0 251 75.7
COL.COLO4_08082 Corchorus olitorius HOM05D000246 ORTHO05D005907 9.9e-100 367.1 251 74.9
SEGI_02915 Sequoiadendron giganteum HOM05D000246 ORTHO05D005907 1.3e-99 366.7 251 71.3
BolC5t29661H Brassica oleracea HOM05D000246 ORTHO05D005907 1.6e-97 359.8 232 76.3
vmacro00560 Vaccinium macrocarpon HOM05D000246 ORTHO05D005907 2.8e-94 349.0 336 58.3
Oeu034474.1 Olea europaea HOM05D000246 ORTHO05D005907 3.6e-94 348.6 294 63.6
Duzib268G0303 Durio zibethinus HOM05D000246 ORTHO05D005907 8.1e-94 347.4 251 71.7
MELO3C017707.2 Cucumis melo HOM05D000246 ORTHO05D005907 5.8e-92 341.3 216 78.2
CBR_g23450 Chara braunii HOM05D000246 ORTHO05D005907 1.7e-91 339.7 247 66.8
C08p13990 Brassica napus HOM05D000246 ORTHO05D005907 3.8e-91 338.6 277 65.3
TPR.G2903 Trifolium pratense HOM05D000246 ORTHO05D005907 2.0e-84 316.2 207 76.3
TAR365G1195 Trochodendron aralioides HOM05D000246 ORTHO05D005907 8.1e-78 294.3 181 81.2
Duzib151G0358 Durio zibethinus HOM05D000246 ORTHO05D005907 5.3e-77 291.6 227 67.8
Hma1.2p1_1025F.1_g249250 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 5.3e-77 291.6 181 81.2
Hma1.2p1_3184F.1_g333715 Hydrangea macrophylla HOM05D000246 ORTHO05D005907 5.3e-77 291.6 181 81.2
Ciclev10033395m.g Citrus clementina HOM05D000246 ORTHO05D005907 9.0e-77 290.8 254 59.4
PRCOL_00002009 Prasinoderma coloniale HOM05D000246 ORTHO05D005907 2.0e-76 289.7 248 58.1
Cre16.g676314 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D005907 1.2e-68 263.8 249 51.0
MCO05G711 Micromonas commoda HOM05D000246 ORTHO05D005907 1.4e-66 256.9 251 53.4
AagrBONN_evm.TU.Sc2ySwM_344.209 Anthoceros agrestis HOM05D000246 ORTHO05D005907 7.2e-58 228.0 158 69.0
Actinidia32962 Actinidia chinensis HOM05D000246 ORTHO05D052905 2.7e-33 146.4 161 53.4
AagrBONN_evm.TU.Sc2ySwM_362.466 Anthoceros agrestis HOM05D000246 ORTHO05D075151 1.3e-27 127.5 74 85.1
Pp3c25_2670 Physcomitrium patens HOM05D000246 ORTHO05D005907 1.4e-21 107.5 78 67.9
PSO675G6425 Papaver somniferum HOM05D000246 ORTHO05D005907 2.6e-15 86.7 79 57.0
SHI25257 Sapria himalayana HOM05D000246 ORTHO05D005907 2.2e-14 83.6 39 97.4
AagrBONN_evm.TU.Sc2ySwM_362.465 Anthoceros agrestis HOM05D000246 ORTHO05D076687 8.3e-14 81.6 112 42.9


User provided reference genes

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