Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018434 Chenopodium quinoa HOM05D003429 ORTHO05D003873 4.8e-97 357.8 181 100.0
AUR62020999 Chenopodium quinoa HOM05D003429 ORTHO05D003873 1.2e-79 300.1 229 71.2
Hund24514 Selenicereus undatus HOM05D003429 ORTHO05D003873 3.0e-59 232.3 228 54.4
HPP92_028456 Vanilla planifolia HOM05D003429 ORTHO05D003873 5.7e-58 228.0 179 63.1
Sc13g0000830 Simmondsia chinensis HOM05D003429 ORTHO05D003873 8.3e-57 224.2 228 53.1
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 7.0e-56 221.1 228 50.9
vmacro07588 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 7.0e-56 221.1 228 50.9
vmacro07757 Vaccinium macrocarpon HOM05D003429 ORTHO05D003873 7.0e-56 221.1 228 50.9
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 9.1e-56 220.7 228 50.9
Peaxi162Scf00139g01028 Petunia axillaris HOM05D003429 ORTHO05D003873 1.2e-55 220.3 212 52.4
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 2.0e-55 219.5 228 50.4
Manes.04G153600 Manihot esculenta HOM05D003429 ORTHO05D003873 1.7e-54 216.5 228 51.8
TAR629G1055 Trochodendron aralioides HOM05D003429 ORTHO05D003873 1.7e-54 216.5 228 51.3
Prupe.2G050900 Prunus persica HOM05D003429 ORTHO05D003873 5.0e-54 214.9 228 51.3
Prupe.2G051400 Prunus persica HOM05D003429 ORTHO05D003873 1.9e-53 213.0 228 50.9
Sed0026988 Sechium edule HOM05D003429 ORTHO05D003873 1.9e-53 213.0 228 51.3
Thecc.10G129100 Theobroma cacao HOM05D003429 ORTHO05D003873 2.5e-53 212.6 228 50.4
Potri.003G189500 Populus trichocarpa HOM05D003429 ORTHO05D003873 3.2e-53 212.2 228 50.0
MELO3C011384.2 Cucumis melo HOM05D003429 ORTHO05D003873 4.2e-53 211.8 228 51.3
Sopen01g020360 Solanum pennellii HOM05D003429 ORTHO05D003873 5.5e-53 211.5 228 48.2
Ciclev10000149m.g Citrus clementina HOM05D003429 ORTHO05D003873 7.2e-53 211.1 228 50.4
CsaV3_6G035760 Cucumis sativus L. HOM05D003429 ORTHO05D003873 7.2e-53 211.1 228 50.9
Potri.001G036100 Populus trichocarpa HOM05D003429 ORTHO05D003873 7.2e-53 211.1 228 50.0
CiPaw.13G018300 Carya illinoinensis HOM05D003429 ORTHO05D003873 9.4e-53 210.7 228 50.9
MSTRG.20488 Avicennia marina HOM05D003429 ORTHO05D003873 1.2e-52 210.3 228 50.4
CANSAT56G3732 Cannabis sativa HOM05D003429 ORTHO05D003873 1.2e-52 210.3 228 50.0
Carub.0006s0499 Capsella rubella HOM05D003429 ORTHO05D003873 1.2e-52 210.3 227 49.3
Eucgr.G03181 Eucalyptus grandis HOM05D003429 ORTHO05D003873 1.2e-52 210.3 228 51.3
AL6G16070 Arabidopsis lyrata HOM05D003429 ORTHO05D003873 1.6e-52 209.9 228 49.6
BcaB05g21683 Brassica carinata HOM05D003429 ORTHO05D003873 1.6e-52 209.9 228 49.6
C02p02580 Brassica napus HOM05D003429 ORTHO05D003873 1.6e-52 209.9 228 49.6
Dinv03754 Davidia involucrata HOM05D003429 ORTHO05D003873 1.6e-52 209.9 228 50.0
THA.LOC104826824 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 1.6e-52 209.9 228 50.4
Duzib114G0344 Durio zibethinus HOM05D003429 ORTHO05D003873 2.1e-52 209.5 228 50.0
Gohir.A10G192300 Gossypium hirsutum HOM05D003429 ORTHO05D003873 2.1e-52 209.5 227 50.7
Gohir.D10G200200 Gossypium hirsutum HOM05D003429 ORTHO05D003873 2.1e-52 209.5 227 50.7
Gorai.011G224400 Gossypium raimondii HOM05D003429 ORTHO05D003873 2.1e-52 209.5 227 50.7
PSO384G1706 Papaver somniferum HOM05D003429 ORTHO05D003873 2.1e-52 209.5 228 50.0
Solyc01g056520.3 Solanum lycopersicum HOM05D003429 ORTHO05D003873 2.1e-52 209.5 228 47.8
SGA_v2.0_scaffold164G38141 Striga asiatica HOM05D003429 ORTHO05D003873 2.1e-52 209.5 228 49.6
Glyma.04G003000 Glycine max HOM05D003429 ORTHO05D003873 2.7e-52 209.1 228 49.1
Sc09g0004760 Simmondsia chinensis HOM05D003429 ORTHO05D003873 2.7e-52 209.1 228 49.1
VMungo1309G0597 Vigna mungo HOM05D003429 ORTHO05D003873 2.7e-52 209.1 228 49.1
CARHR206820 Cardamine hirsuta HOM05D003429 ORTHO05D003873 3.6e-52 208.8 227 49.3
Lj1g0005148 Lotus japonicus HOM05D003429 ORTHO05D003873 3.6e-52 208.8 228 49.6
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 3.6e-52 208.8 228 49.6
RcHm_v2.0_Chr1g0329811 Rosa chinensis HOM05D003429 ORTHO05D003873 3.6e-52 208.8 228 49.6
arahy.Tifrunner.gnm1.ann1.3RNG04 Arachis hypogaea HOM05D003429 ORTHO05D003873 4.7e-52 208.4 228 49.1
GSVIVG01012453001 Vitis vinifera HOM05D003429 ORTHO05D003873 4.7e-52 208.4 228 50.4
A10p30310 Brassica napus HOM05D003429 ORTHO05D003873 8.0e-52 207.6 228 50.0
PGR031G2936 Punica granatum HOM05D003429 ORTHO05D003873 8.0e-52 207.6 228 50.4
Sp6g36790 Schrenkiella parvula HOM05D003429 ORTHO05D003873 8.0e-52 207.6 228 49.1
TWI63G1019 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 8.0e-52 207.6 228 48.2
AT5G06120 Arabidopsis thaliana HOM05D003429 ORTHO05D003873 1.0e-51 207.2 228 48.7
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 1.4e-51 206.8 228 49.1
arahy.Tifrunner.gnm1.ann1.P7SNS1 Arachis hypogaea HOM05D003429 ORTHO05D003873 1.4e-51 206.8 228 48.7
Dinv04984 Davidia involucrata HOM05D003429 ORTHO05D003873 1.4e-51 206.8 228 50.0
Migut.B01173 Erythranthe guttata HOM05D003429 ORTHO05D003873 1.4e-51 206.8 228 49.6
BcaC06g32321 Brassica carinata HOM05D003429 ORTHO05D003873 1.8e-51 206.5 228 49.6
C09p70720 Brassica napus HOM05D003429 ORTHO05D003873 1.8e-51 206.5 228 49.6
FvH4_7g04530 Fragaria vesca HOM05D003429 ORTHO05D003873 1.8e-51 206.5 228 49.1
FAN10G0722 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.8e-51 206.5 228 49.1
Phvul.009G118700 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 1.8e-51 206.5 228 48.2
Atru.chr12.1194 Acer truncatum HOM05D003429 ORTHO05D003873 2.3e-51 206.1 228 49.1
Ca_15294_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 2.3e-51 206.1 230 47.8
Lalb_Chr11g0061181 Lupinus albus HOM05D003429 ORTHO05D003873 3.0e-51 205.7 228 49.1
FAN03G0932 Fragaria x ananassa HOM05D003429 ORTHO05D003873 4.0e-51 205.3 227 48.5
MD07G1118000 Malus domestica HOM05D003429 ORTHO05D003873 4.0e-51 205.3 228 47.8
HPP92_028715 Vanilla planifolia HOM05D003429 ORTHO05D003873 5.2e-51 204.9 228 49.6
TWI53G2015 Tripterygium wilfordii HOM05D003429 ORTHO05D003873 8.8e-51 204.1 228 49.1
BraA02t04869Z Brassica rapa HOM05D003429 ORTHO05D003873 1.5e-50 203.4 234 48.3
Zm00001eb278500 Zea mays HOM05D003429 ORTHO05D003873 1.5e-50 203.4 228 48.7
THA.LOC104816588 Tarenaya hassleriana HOM05D003429 ORTHO05D003873 2.0e-50 203.0 228 49.1
TPR.G38508 Trifolium pratense HOM05D003429 ORTHO05D003873 2.0e-50 203.0 228 48.2
Glyma.06G003000 Glycine max HOM05D003429 ORTHO05D003873 2.6e-50 202.6 230 48.3
unitig_22.g5335 Utricularia gibba HOM05D003429 ORTHO05D003873 2.6e-50 202.6 228 48.7
Medtr3g118040 Medicago truncatula HOM05D003429 ORTHO05D003873 3.4e-50 202.2 228 48.2
EL10Ac4g08832 Beta vulgaris HOM05D003429 ORTHO05D003873 5.7e-50 201.4 217 49.3
FAN06G0150 Fragaria x ananassa HOM05D003429 ORTHO05D003873 5.7e-50 201.4 234 48.3
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 7.5e-50 201.1 228 47.4
MD02G1207800 Malus domestica HOM05D003429 ORTHO05D003873 7.5e-50 201.1 228 46.9
Aqoxy1G01517 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 9.8e-50 200.7 228 47.4
BraA10t45069Z Brassica rapa HOM05D003429 ORTHO05D003873 9.8e-50 200.7 235 48.5
Cc00_g07020 Coffea canephora HOM05D003429 ORTHO05D003873 9.8e-50 200.7 235 47.7
BolC2t06224H Brassica oleracea HOM05D003429 ORTHO05D003873 1.3e-49 200.3 242 46.7
Oeu013041.2 Olea europaea HOM05D003429 ORTHO05D003873 1.3e-49 200.3 228 48.2
Psat5g001960 Pisum sativum HOM05D003429 ORTHO05D003873 1.3e-49 200.3 228 48.2
BolC9t59828H Brassica oleracea HOM05D003429 ORTHO05D003873 2.2e-49 199.5 235 48.1
MBI19_g25231_MAGBIO Magnolia biondii HOM05D003429 ORTHO05D003873 2.2e-49 199.5 228 48.2
Phvul.007G243600 Phaseolus vulgaris HOM05D003429 ORTHO05D003873 2.2e-49 199.5 228 47.8
Sabra01G0025100 Salix brachista HOM05D003429 ORTHO05D003873 2.8e-49 199.1 262 43.5
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 3.7e-49 198.7 228 47.8
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 3.7e-49 198.7 228 47.8
HanXRQChr16g0510451 Helianthus annuus HOM05D003429 ORTHO05D003873 4.8e-49 198.4 228 47.8
Lalb_Chr02g0156721 Lupinus albus HOM05D003429 ORTHO05D003873 1.4e-48 196.8 228 49.6
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 3.1e-48 195.7 227 46.7
ECA248G1206 Erigeron canadensis HOM05D003429 ORTHO05D003873 4.1e-48 195.3 227 45.8
Thhalv10012516m.g Eutrema salsugineum HOM05D003429 ORTHO05D003873 5.4e-48 194.9 259 44.0
SalBow5G1634 Salvia bowleyana HOM05D003429 ORTHO05D003873 2.7e-47 192.6 228 47.4
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 5.9e-47 191.4 225 46.7
FAN01G2134 Fragaria x ananassa HOM05D003429 ORTHO05D003873 1.3e-46 190.3 263 43.0
DCAR_013522 Daucus carota HOM05D003429 ORTHO05D003873 3.8e-46 188.7 228 44.7
FAN06G3547 Fragaria x ananassa HOM05D003429 ORTHO05D003873 3.8e-46 188.7 263 42.6
Glyma.10G104900 Glycine max HOM05D003429 ORTHO05D003873 6.6e-46 188.0 227 45.8
EL10Ac3g07341 Beta vulgaris HOM05D003429 ORTHO05D003873 1.9e-45 186.4 178 55.1
Hund06843 Selenicereus undatus HOM05D003429 ORTHO05D003873 4.2e-45 185.3 295 40.0
Medtr1g051125 Medicago truncatula HOM05D003429 ORTHO05D003873 1.2e-44 183.7 228 44.3
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 6.1e-44 181.4 228 42.1
TPR.G13799 Trifolium pratense HOM05D003429 ORTHO05D003873 6.1e-44 181.4 228 44.7
QL07p014239 Quercus lobata HOM05D003429 ORTHO05D003873 8.0e-44 181.0 244 42.6
SMO367G0627 Selaginella moellendorffii HOM05D003429 ORTHO05D003873 1.0e-43 180.6 237 43.5
GSVIVG01025856001 Vitis vinifera HOM05D003429 ORTHO05D003873 1.8e-43 179.9 201 50.2
Lsat_1_v5_gn_1_118001 Lactuca sativa HOM05D003429 ORTHO05D003873 5.2e-43 178.3 228 45.6
QL04p022451 Quercus lobata HOM05D003429 ORTHO05D003873 4.1e-40 168.7 135 60.7
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 1.2e-39 167.2 175 50.9
HPP92_028707 Vanilla planifolia HOM05D003429 ORTHO05D003873 1.6e-39 166.8 190 47.9
Aa31LG11G7100 Aethionema arabicum HOM05D003429 ORTHO05D003873 5.9e-39 164.9 191 47.1
Manes.11G010000 Manihot esculenta HOM05D003429 ORTHO05D003873 1.1e-37 160.6 182 47.8
Duzib128G2024 Durio zibethinus HOM05D003429 ORTHO05D003873 7.3e-37 157.9 181 47.0
Psat6g086480 Pisum sativum HOM05D003429 ORTHO05D003873 9.5e-37 157.5 228 40.8
PRCOL_00000821 Prasinoderma coloniale HOM05D003429 ORTHO05D003873 4.7e-36 155.2 230 39.6
DCAR_022673 Daucus carota HOM05D003429 ORTHO05D003873 8.0e-36 154.5 182 45.6
MCO13G155 Micromonas commoda HOM05D003429 ORTHO05D003873 8.0e-36 154.5 227 40.5
Cre02.g141506 Chlamydomonas reinhardtii HOM05D003429 ORTHO05D003873 1.5e-34 150.2 242 37.2
Ca_29535_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 7.5e-34 147.9 136 54.4
ATR0782G154 Amborella trichopoda HOM05D003429 ORTHO05D003873 6.4e-33 144.8 170 46.5
Oeu008545.1 Olea europaea HOM05D003429 ORTHO05D003873 1.6e-31 140.2 118 58.5
VMungo0720G3126 Vigna mungo HOM05D003429 ORTHO05D003873 8.6e-30 134.4 169 45.0
GSVIVG01021243001 Vitis vinifera HOM05D003429 ORTHO05D003873 5.6e-29 131.7 134 50.7
BcaC06g32583 Brassica carinata HOM05D000478 ORTHO05D000345 1.6e-28 130.2 114 55.3
AUR62035521 Chenopodium quinoa HOM05D003429 ORTHO05D003873 2.8e-28 129.4 179 45.8
Lsat_1_v5_gn_8_67461 Lactuca sativa HOM05D003429 ORTHO05D003873 5.2e-27 125.2 155 44.5
SHI25005 Sapria himalayana HOM05D003429 ORTHO05D003873 1.2e-23 114.0 175 37.1
Ca_14866_v3 Cicer arietinum L. HOM05D003429 ORTHO05D003873 6.0e-23 111.7 251 31.1
Nitab4.5_0000211g0050 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.3e-22 109.8 91 57.1
Nitab4.5_0002094g0070 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.3e-22 109.8 91 57.1
Nn1g02902 Nelumbo nucifera HOM05D003429 ORTHO05D003873 3.0e-22 109.4 101 52.5
Cpa.g.sc33.148 Carica papaya HOM05D003429 ORTHO05D003873 1.1e-21 107.5 138 43.5
Haze_02953 Corylus avellana HOM05D003429 ORTHO05D003873 3.3e-21 105.9 152 40.1
CBR_g30950 Chara braunii HOM05D003429 ORTHO05D003873 7.3e-21 104.8 139 42.4
AUR62041296 Chenopodium quinoa HOM05D003429 ORTHO05D003873 7.3e-21 104.8 126 49.2
Manes.03G089519 Manihot esculenta HOM05D003429 ORTHO05D003873 2.0e-18 96.7 100 55.0
Manes.13G093344 Manihot esculenta HOM05D003429 ORTHO05D003873 2.0e-18 96.7 100 55.0
Oeu055891.1 Olea europaea HOM05D003429 ORTHO05D003873 5.6e-13 78.6 46 80.4
CAN.G114.9 Capsicum annuum HOM05D003429 ORTHO05D003873 1.1e-11 74.3 62 61.3
Nn7g37083 Nelumbo nucifera HOM05D003429 ORTHO05D003873 1.1e-11 74.3 44 79.5
QL04p022427 Quercus lobata HOM05D003429 ORTHO05D003873 1.4e-11 73.9 50 68.0
Ah.04g150250 Amaranthus hybridus HOM05D003429 ORTHO05D003873 4.0e-11 72.4 59 64.4
Nitab4.5_0000211g0070 Nicotiana tabacum HOM05D003429 ORTHO05D003873 2.0e-10 70.1 52 57.7
QL07p010213 Quercus lobata HOM05D002614 ORTHO05D000004 2.6e-10 69.7 46 65.2
Manes.13G089800 Manihot esculenta HOM05D003429 ORTHO05D003873 5.8e-10 68.6 63 55.6
Manes.04G056744 Manihot esculenta HOM05D003429 ORTHO05D003873 1.1e-08 64.3 46 58.7
Os01g0278200 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 6.0e-07 58.5 46 60.9


User provided reference genes

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