Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.8e-32 141.0 74 100.0
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 3.2e-31 137.9 74 97.3
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 4.0e-26 120.9 74 83.8
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 9.3e-23 109.8 69 79.7
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 1.2e-22 109.4 69 79.7
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.2e-22 109.4 66 83.3
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.6e-22 109.0 63 85.7
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 1.6e-22 109.0 70 82.9
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.6e-22 109.0 66 81.8
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.1e-22 108.6 69 79.7
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 2.1e-22 108.6 66 83.3
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 2.7e-22 108.2 71 78.9
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.7e-22 108.2 69 78.3
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.7e-22 108.2 69 78.3
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 6.0e-22 107.1 69 78.3
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 7.8e-22 106.7 63 85.7
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.0e-21 106.3 69 79.7
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 1.0e-21 106.3 73 75.3
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 1.0e-21 106.3 67 79.1
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.0e-21 106.3 63 84.1
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.0e-21 106.3 70 80.0
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.3e-21 105.9 66 80.3
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.3e-21 105.9 66 80.3
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.3e-21 105.9 63 84.1
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.3e-21 105.9 70 80.0
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.3e-21 105.9 70 80.0
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 1.7e-21 105.5 69 79.7
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 1.7e-21 105.5 76 73.7
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 2.3e-21 105.1 64 79.7
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 3.0e-21 104.8 70 78.6
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.0e-21 104.8 66 81.8
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 3.0e-21 104.8 73 79.5
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 5.1e-21 104.0 68 80.9
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 6.6e-21 103.6 62 83.9
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 6.6e-21 103.6 67 77.6
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 6.6e-21 103.6 74 75.7
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 6.6e-21 103.6 76 73.7
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 8.7e-21 103.2 58 91.4
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 8.7e-21 103.2 58 91.4
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 8.7e-21 103.2 58 91.4
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 8.7e-21 103.2 58 91.4
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 8.7e-21 103.2 64 78.1
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 8.7e-21 103.2 74 74.3
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 8.7e-21 103.2 70 77.1
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.1e-20 102.8 69 79.7
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 1.1e-20 102.8 65 76.9
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 1.1e-20 102.8 67 80.6
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.1e-20 102.8 64 81.2
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.1e-20 102.8 66 81.8
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.5e-20 102.4 73 75.3
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 1.9e-20 102.1 72 75.0
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 1.9e-20 102.1 71 74.6
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 2.5e-20 101.7 71 71.8
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 2.5e-20 101.7 72 75.0
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.5e-20 101.7 72 75.0
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.5e-20 101.7 72 75.0
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 2.5e-20 101.7 68 80.9
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 2.5e-20 101.7 63 84.1
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 3.3e-20 101.3 64 79.7
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 3.3e-20 101.3 75 72.0
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 3.3e-20 101.3 80 70.0
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 3.3e-20 101.3 66 78.8
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 4.3e-20 100.9 67 76.1
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 4.3e-20 100.9 66 74.2
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 4.3e-20 100.9 73 74.0
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 4.3e-20 100.9 70 75.7
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 4.3e-20 100.9 70 74.3
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 4.3e-20 100.9 58 87.9
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 5.6e-20 100.5 64 79.7
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 5.6e-20 100.5 63 81.0
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 5.6e-20 100.5 67 77.6
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 5.6e-20 100.5 69 79.7
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 5.6e-20 100.5 73 68.5
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 7.3e-20 100.1 63 81.0
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 7.3e-20 100.1 63 81.0
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 7.3e-20 100.1 58 87.9
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 7.3e-20 100.1 58 87.9
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 7.3e-20 100.1 63 82.5
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 9.6e-20 99.8 62 82.3
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.3e-19 99.4 74 71.6
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 1.3e-19 99.4 74 71.6
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 70.4
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 1.3e-19 99.4 67 77.6
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 1.3e-19 99.4 72 72.2
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 1.3e-19 99.4 71 71.8
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.3e-19 99.4 66 75.8
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 1.6e-19 99.0 58 86.2
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 1.6e-19 99.0 58 86.2
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.6e-19 99.0 71 70.4
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.6e-19 99.0 71 71.8
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 1.6e-19 99.0 71 69.0
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.6e-19 99.0 70 74.3
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 2.1e-19 98.6 58 86.2
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.1e-19 98.6 72 73.6
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 2.1e-19 98.6 73 72.6
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 2.1e-19 98.6 63 77.8
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 2.8e-19 98.2 63 79.4
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 2.8e-19 98.2 71 73.2
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 2.8e-19 98.2 68 75.0
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 3.6e-19 97.8 69 72.5
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.6e-19 97.8 62 80.6
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 4.8e-19 97.4 59 81.4
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 4.8e-19 97.4 64 73.4
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 4.8e-19 97.4 64 78.1
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 6.2e-19 97.1 64 78.1
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 6.2e-19 97.1 64 78.1
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 6.2e-19 97.1 70 72.9
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 8.1e-19 96.7 68 72.1
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 8.1e-19 96.7 58 84.5
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 8.1e-19 96.7 71 71.8
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 8.1e-19 96.7 72 70.8
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 8.1e-19 96.7 70 68.6
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 1.1e-18 96.3 66 75.8
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 1.1e-18 96.3 71 69.0
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 1.1e-18 96.3 71 71.8
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.4e-18 95.9 58 81.0
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.8e-18 95.5 64 75.0
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.8e-18 95.5 60 80.0
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 3.1e-18 94.7 70 67.1
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 4.0e-18 94.4 65 73.8
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 4.0e-18 94.4 67 76.1
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 5.3e-18 94.0 64 76.6
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 5.3e-18 94.0 62 77.4
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 5.3e-18 94.0 60 78.3
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 5.3e-18 94.0 55 87.3
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 6.9e-18 93.6 71 70.4
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 9.0e-18 93.2 61 82.0
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 9.0e-18 93.2 65 75.4
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 2.0e-17 92.0 60 75.0
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.6e-17 91.7 58 77.6
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 2.6e-17 91.7 71 67.6
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 2.2e-16 88.6 54 81.5
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.2e-16 88.6 70 64.3
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 1.4e-15 85.9 52 80.8
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 2.4e-15 85.1 55 76.4
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.4e-15 85.1 67 67.2
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.4e-15 85.1 67 67.2
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 2.4e-15 85.1 70 64.3
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 3.2e-15 84.7 67 65.7
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 9.3e-15 83.2 63 66.7
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 2.3e-13 78.6 58 65.5
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 6.7e-13 77.0 56 69.6
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.7e-13 77.0 56 69.6
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 6.7e-13 77.0 51 80.4
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 6.7e-13 77.0 58 70.7
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.1e-12 76.3 53 71.7
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.5e-12 75.9 46 82.6
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 2.5e-12 75.1 58 60.3
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 2.5e-12 75.1 58 60.3
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 4.3e-12 74.3 58 63.8
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.6e-11 72.4 69 53.6
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 3.7e-11 71.2 70 52.9
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 6.2e-11 70.5 50 68.0
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 1.1e-10 69.7 58 58.6
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 3.4e-09 64.7 34 91.2
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 2.2e-08 62.0 47 59.6


User provided reference genes

Program Settings