Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 9.1e-237 823.2 412 100.0
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 2.0e-215 752.3 412 92.5
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.3e-174 616.7 421 73.4
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 5.7e-146 521.5 461 59.0
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.1e-138 497.3 380 67.4
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 2.9e-134 482.6 428 59.3
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 6.5e-134 481.5 427 58.3
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 8.5e-134 481.1 427 58.8
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.6e-132 476.9 427 58.1
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 7.7e-127 458.0 389 60.9
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 8.8e-123 444.5 424 52.8
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 2.0e-122 443.4 427 54.1
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.2e-121 439.9 427 52.9
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 3.7e-121 439.1 429 52.9
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 1.2e-119 434.1 376 58.8
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.6e-119 433.7 424 52.1
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 2.0e-119 433.3 428 51.6
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 2.0e-119 433.3 425 51.5
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 3.5e-119 432.6 426 52.1
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 5.9e-119 431.8 430 52.6
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 2.3e-118 429.9 427 52.9
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 3.8e-118 429.1 415 53.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 7.2e-117 424.9 428 51.9
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 2.1e-116 423.3 415 53.5
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 6.1e-116 421.8 415 50.8
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 1.4e-115 420.6 429 52.2
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 2.4e-112 409.8 420 51.2
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.4e-112 409.8 410 52.0
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 3.2e-112 409.5 410 52.0
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 5.4e-112 408.7 425 50.1
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 1.6e-111 407.1 393 54.7
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 2.7e-111 406.4 427 49.6
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 3.5e-111 406.0 444 50.9
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 1.3e-110 404.1 432 50.0
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 2.5e-109 399.8 422 48.3
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 4.3e-109 399.1 420 49.0
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 3.1e-107 392.9 412 50.7
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 4.0e-107 392.5 420 49.3
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 5.2e-107 392.1 419 47.5
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 5.2e-107 392.1 363 54.8
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.2e-107 392.1 411 50.4
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 4.4e-106 389.0 426 48.6
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 5.8e-106 388.7 412 50.0
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 9.8e-106 387.9 429 48.7
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 1.3e-105 387.5 411 49.9
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 2.2e-105 386.7 428 47.7
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.4e-104 383.3 421 48.9
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 2.4e-104 383.3 421 48.9
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 4.1e-104 382.5 427 47.3
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 6.0e-103 378.6 428 47.7
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.0e-102 377.9 427 47.8
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.3e-102 377.5 421 47.3
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 1.7e-102 377.1 421 48.2
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 3.0e-102 376.3 427 46.1
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.6e-102 374.8 424 47.4
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 2.5e-101 373.2 427 47.3
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 3.3e-101 372.9 425 46.4
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 5.6e-101 372.1 436 48.4
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 9.5e-101 371.3 430 46.7
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.2e-100 370.9 427 47.5
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.6e-100 370.5 428 48.1
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.6e-100 370.5 413 48.4
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 2.1e-100 370.2 428 46.7
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 2.1e-100 370.2 418 46.9
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 3.6e-100 369.4 437 47.8
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 6.2e-100 368.6 421 48.2
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 8.1e-100 368.2 421 48.2
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 1.8e-99 367.1 431 46.9
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 3.1e-99 366.3 429 45.7
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 4.0e-99 365.9 423 46.3
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.2e-98 364.4 413 47.9
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 2.2e-97 360.1 356 53.1
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.4e-96 357.5 393 47.8
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 1.9e-96 357.1 415 46.0
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 2.4e-96 356.7 431 45.5
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 9.2e-96 354.8 431 44.5
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.2e-96 354.8 397 49.4
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.6e-95 354.0 424 46.2
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.6e-95 354.0 424 46.2
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.6e-95 354.0 431 45.2
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 2.1e-95 353.6 431 45.2
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 2.7e-95 353.2 375 47.2
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 2.7e-95 353.2 427 45.7
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 3.5e-95 352.8 418 46.2
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.7e-94 350.5 430 44.2
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.3e-94 350.1 421 46.1
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 5.1e-94 349.0 420 45.0
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 8.6e-94 348.2 413 47.0
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.5e-93 347.4 396 45.7
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 5.6e-93 345.5 430 44.0
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.1e-92 343.6 422 45.7
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 4.7e-92 342.4 416 45.4
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 8.1e-92 341.7 467 42.2
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.4e-91 340.9 463 41.9
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 1.2e-90 337.8 423 45.4
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 1.5e-90 337.4 414 45.9
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 1.3e-89 334.3 417 45.1
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 2.9e-89 333.2 412 43.0
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.4e-88 330.1 429 45.0
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 3.2e-88 329.7 437 43.2
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.5e-85 320.9 365 45.5
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 2.8e-84 316.6 424 42.7
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 8.9e-83 311.6 428 41.1
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 4.3e-77 292.7 331 46.2
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 5.6e-77 292.4 407 40.3
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 9.6e-77 291.6 427 39.1
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.3e-76 291.2 426 39.2
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 1.2e-71 274.6 367 43.6
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 1.7e-70 270.8 408 39.5
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 2.0e-66 257.3 338 46.2
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.0e-58 230.7 376 37.0
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.0e-57 228.4 358 36.9
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.3e-54 218.0 205 52.2
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.9e-54 216.5 213 50.7
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.9e-53 214.2 415 34.9
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.6e-52 211.1 268 45.5
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 7.9e-47 192.2 182 51.1
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 1.8e-46 191.0 383 34.5
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.5e-45 188.0 430 31.9
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 2.5e-45 187.2 336 34.8
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 2.6e-42 177.2 432 30.8
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.0e-38 165.2 436 28.2
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 2.3e-38 164.1 464 27.8
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 3.1e-35 153.7 420 27.1
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.5e-34 151.4 434 28.1
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 2.9e-33 147.1 155 51.6
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.9e-32 144.4 140 48.6
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.7e-31 140.6 492 25.6
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 6.1e-31 139.4 462 27.5
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.9e-25 120.6 448 27.7
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.0e-18 97.8 203 32.0
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.9e-17 94.0 237 29.1
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 9.4e-16 89.0 76 53.9
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.5e-13 81.6 236 30.9
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 2.2e-12 77.8 96 46.9
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 1.8e-11 74.7 80 41.2
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 5.4e-11 73.2 52 55.8
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 9.1e-11 72.4 214 29.4
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 7.7e-10 69.3 61 52.5
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 1.7e-09 68.2 50 64.0
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.5e-08 64.3 59 57.6


User provided reference genes

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