Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 0.0e+00 1123.2 677 100.0
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 3.5e-209 732.3 489 90.0
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 1.1e-149 534.6 507 71.8
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 1.1e-138 498.0 509 69.2
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 4.1e-125 453.0 463 66.3
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 1.1e-122 444.9 445 66.5
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 2.0e-119 434.1 448 65.0
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 1.6e-116 424.5 449 65.7
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 8.0e-113 412.1 439 61.7
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 8.8e-112 408.7 428 64.3
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 1.2e-111 408.3 449 64.4
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 3.4e-111 406.8 472 60.2
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 3.4e-111 406.8 440 67.3
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 1.3e-110 404.8 441 67.8
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 2.2e-110 404.1 471 59.7
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 3.7e-110 403.3 440 65.9
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 4.8e-110 402.9 447 64.2
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 8.3e-110 402.1 437 64.3
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 2.4e-109 400.6 441 62.1
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 3.1e-109 400.2 457 60.8
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 4.1e-109 399.8 450 61.8
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 4.1e-109 399.8 433 63.5
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 5.4e-109 399.4 457 60.6
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 7.0e-109 399.1 447 63.5
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 2.7e-108 397.1 464 60.1
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 7.7e-108 395.6 457 60.0
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.3e-107 394.8 440 61.8
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 4.2e-106 389.8 440 63.2
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 2.1e-105 387.5 449 62.1
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 2.1e-105 387.5 441 56.7
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 6.1e-105 386.0 437 62.0
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.0e-104 385.2 451 54.5
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 1.2e-103 381.7 485 56.7
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 1.5e-103 381.3 497 60.4
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 2.0e-103 380.9 448 60.9
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 2.6e-103 380.6 445 58.9
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 9.8e-103 378.6 440 65.9
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 9.8e-103 378.6 474 58.4
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 1.6e-100 371.3 437 66.4
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 5.9e-100 369.4 440 65.5
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 6.6e-99 365.9 437 62.0
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 5.6e-98 362.8 440 58.0
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 5.6e-98 362.8 440 58.4
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 1.6e-97 361.3 450 60.9
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 4.7e-97 359.8 452 59.3
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 4.7e-97 359.8 415 61.9
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 1.4e-96 358.2 440 57.0
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 1.8e-96 357.8 442 57.9
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 2.2e-94 350.9 440 56.6
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 3.7e-94 350.1 440 57.0
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 8.3e-94 349.0 444 55.9
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 1.4e-93 348.2 444 57.2
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 7.0e-93 345.9 443 61.9
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 4.6e-92 343.2 447 63.1
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 6.0e-92 342.8 440 62.3
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 6.0e-92 342.8 386 63.0
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 8.6e-91 339.0 437 53.8
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 4.7e-89 333.2 405 64.4
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 1.1e-88 332.0 437 53.1
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 2.3e-88 330.9 437 59.5
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 2.6e-87 327.4 388 62.6
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 4.4e-87 326.6 464 60.6
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 2.9e-86 323.9 385 61.0
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 4.9e-86 323.2 437 59.3
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 6.4e-86 322.8 437 57.0
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 6.4e-86 322.8 431 54.8
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 3.2e-85 320.5 427 54.8
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 1.6e-84 318.2 434 52.5
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 2.1e-84 317.8 440 55.2
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 4.6e-84 316.6 456 50.7
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 4.6e-84 316.6 441 57.4
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 6.0e-84 316.2 464 56.7
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 5.1e-83 313.2 431 52.9
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 5.1e-83 313.2 431 52.2
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 7.3e-82 309.3 449 57.5
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 2.8e-81 307.4 411 59.1
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 3.6e-81 307.0 445 52.1
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 6.2e-81 306.2 448 60.0
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 8.1e-81 305.8 441 56.5
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 3.1e-80 303.9 441 56.5
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 2.9e-78 297.4 443 58.9
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 1.9e-77 294.7 447 58.8
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 1.9e-77 294.7 449 57.5
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 3.5e-76 290.4 467 48.2
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 1.3e-75 288.5 441 52.2
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 6.8e-72 276.2 439 54.4
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 5.8e-71 273.1 438 52.1
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 6.4e-70 269.6 381 40.2
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 6.4e-70 269.6 381 40.2
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 1.6e-68 265.0 411 52.8
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 1.6e-68 265.0 395 55.4
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 2.1e-68 264.6 434 36.6
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 9.6e-66 255.8 477 52.0
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 1.2e-55 222.2 441 46.7
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 1.2e-55 222.2 441 46.7
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 7.6e-55 219.5 369 35.8
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 7.6e-55 219.5 369 35.8
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 7.9e-52 209.5 387 50.9
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 3.0e-51 207.6 386 48.4
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 2.3e-43 181.4 186 50.5
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.3e-41 175.6 312 34.9
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 3.7e-41 174.1 180 48.9
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 8.2e-41 172.9 186 47.8
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 2.2e-25 121.7 109 58.7
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 5.2e-11 73.9 48 68.8
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 2.8e-09 68.2 112 33.9
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 2.8e-09 68.2 112 33.9
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 7.0e-08 63.5 216 27.3
GSVIVG01000864001 Vitis vinifera HOM05D005973 ORTHO05D007285 9.1e-08 63.2 205 26.3
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.6e-07 61.6 140 26.4
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 3.5e-07 61.2 163 28.8
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 3.5e-07 61.2 141 27.7
unitig_748.g7288 Utricularia gibba HOM05D000001 ORTHO05D010669 3.5e-07 61.2 144 29.2
Phvul.001G095200 Phaseolus vulgaris HOM05D000424 ORTHO05D008586 4.5e-07 60.8 159 30.2
QL05p089319 Quercus lobata HOM05D005973 ORTHO05D007285 4.5e-07 60.8 216 26.9
Nn3g18338 Nelumbo nucifera HOM05D000424 ORTHO05D008586 7.7e-07 60.1 132 29.5
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 7.7e-07 60.1 147 27.9
Zm00001eb246390 Zea mays HOM05D000424 ORTHO05D008586 7.7e-07 60.1 156 32.7
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 1.0e-06 59.7 240 25.8
Manes.05G118900 Manihot esculenta HOM05D005973 ORTHO05D007285 1.0e-06 59.7 218 24.3
Zm00001eb369070 Zea mays HOM05D007168 ORTHO05D000355 1.0e-06 59.7 107 32.7
AagrBONN_evm.TU.Sc2ySwM_344.162 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.3e-06 59.3 151 31.1
Medtr3g023180 Medicago truncatula HOM05D005973 ORTHO05D007285 1.3e-06 59.3 197 26.9
Sed0028237 Sechium edule HOM05D000424 ORTHO05D008586 1.3e-06 59.3 133 30.1
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.7e-06 58.9 140 25.7
RcHm_v2.0_Chr1g0319391 Rosa chinensis HOM05D005973 ORTHO05D007285 1.7e-06 58.9 217 27.2
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 2.2e-06 58.5 203 23.6
FvH4_3g03080 Fragaria vesca HOM05D000891 ORTHO05D000761 2.2e-06 58.5 168 25.0
Phvul.005G033500 Phaseolus vulgaris HOM05D005973 ORTHO05D007285 2.2e-06 58.5 222 25.7
HPP92_008081 Vanilla planifolia HOM05D000424 ORTHO05D008586 2.2e-06 58.5 130 27.7
DCAR_019981 Daucus carota HOM05D000001 ORTHO05D000003 3.8e-06 57.8 163 22.7
HanXRQChr15g0495131 Helianthus annuus HOM05D004783 ORTHO05D005581 3.8e-06 57.8 160 25.6
Hma1.2p1_0856F.1_g229090 Hydrangea macrophylla HOM05D000424 ORTHO05D008586 3.8e-06 57.8 184 26.6
CiPaw.04G079400 Carya illinoinensis HOM05D005973 ORTHO05D007285 5.0e-06 57.4 219 26.5
MD07G1026900 Malus domestica HOM05D005973 ORTHO05D007285 5.0e-06 57.4 216 25.9
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 6.5e-06 57.0 148 23.6
Glyma.16G043600 Glycine max HOM05D000424 ORTHO05D000355 6.5e-06 57.0 102 30.4
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 6.5e-06 57.0 240 24.2
Aa31LG11G14510 Aethionema arabicum HOM05D000424 ORTHO05D000355 8.5e-06 56.6 200 24.0
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 8.5e-06 56.6 144 24.3
Sc10g0007430 Simmondsia chinensis HOM05D006749 ORTHO05D008352 8.5e-06 56.6 159 23.3


User provided reference genes

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