Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 9.0e-66 253.4 128 100.0
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.0e-65 252.3 128 99.2
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.1e-58 228.4 124 91.1
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 4.0e-58 228.0 127 87.4
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 5.3e-58 227.6 127 88.2
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 2.0e-57 225.7 128 86.7
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.4e-57 224.9 127 87.4
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 7.6e-57 223.8 126 86.5
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 3.8e-56 221.5 126 84.1
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 8.4e-56 220.3 127 86.6
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 2.5e-55 218.8 128 82.0
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 9.3e-55 216.9 127 82.7
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 9.3e-55 216.9 128 80.5
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 2.1e-54 215.7 125 81.6
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.6e-54 214.5 124 83.1
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 4.6e-54 214.5 124 83.1
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 6.0e-54 214.2 127 81.9
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 6.0e-54 214.2 127 81.1
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.0e-53 213.4 127 80.3
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.0e-53 213.4 126 81.7
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.3e-53 213.0 125 80.8
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 2.3e-53 212.2 124 82.3
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 3.0e-53 211.8 128 79.7
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 3.9e-53 211.5 127 80.3
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 5.1e-53 211.1 127 80.3
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 6.7e-53 210.7 125 78.4
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 6.7e-53 210.7 127 81.9
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 6.7e-53 210.7 127 81.9
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 8.7e-53 210.3 106 98.1
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.1e-52 209.9 127 79.5
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.1e-52 209.9 127 79.5
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.1e-52 209.9 127 79.5
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 1.5e-52 209.5 123 81.3
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 3.3e-52 208.4 127 78.7
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 3.3e-52 208.4 127 80.3
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 4.3e-52 208.0 127 80.3
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 5.7e-52 207.6 124 79.0
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 78.0
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 78.7
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 5.7e-52 207.6 126 78.6
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 7.4e-52 207.2 126 79.4
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 9.6e-52 206.8 128 78.9
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 79.5
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.6e-51 206.1 127 76.4
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 2.1e-51 205.7 128 77.3
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 2.1e-51 205.7 128 78.9
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 2.1e-51 205.7 127 78.7
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 2.1e-51 205.7 126 77.0
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 76.4
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 4.8e-51 204.5 127 78.7
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 4.8e-51 204.5 127 79.5
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.8e-51 204.5 127 79.5
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 6.2e-51 204.1 127 78.7
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 6.2e-51 204.1 126 78.6
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 6.2e-51 204.1 128 77.3
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 6.2e-51 204.1 124 81.5
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 6.2e-51 204.1 124 79.0
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 78.7
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 76.4
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 77.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 77.2
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.1e-50 203.4 124 81.5
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 78.7
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.4e-50 203.0 118 83.1
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 78.7
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 78.7
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.4e-50 203.0 125 76.8
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.4e-50 203.0 124 79.8
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 76.4
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.4e-50 203.0 128 77.3
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 78.7
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 1.4e-50 203.0 124 79.0
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 1.8e-50 202.6 118 83.1
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.8e-50 202.6 127 77.2
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 76.4
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 2.4e-50 202.2 126 77.8
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-50 201.8 127 78.7
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 5.3e-50 201.1 124 78.2
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 5.3e-50 201.1 120 79.2
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 6.9e-50 200.7 125 78.4
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 6.9e-50 200.7 124 79.0
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 6.9e-50 200.7 127 76.4
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 6.9e-50 200.7 127 76.4
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 6.9e-50 200.7 124 78.2
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 6.9e-50 200.7 120 78.3
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 6.9e-50 200.7 128 77.3
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 1.2e-49 199.9 127 77.2
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.5e-49 199.5 127 74.8
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 2.6e-49 198.7 128 74.2
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.6e-49 198.7 127 78.0
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 3.4e-49 198.4 127 76.4
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 3.4e-49 198.4 127 76.4
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 4.5e-49 198.0 128 77.3
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 4.5e-49 198.0 127 77.2
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 5.8e-49 197.6 127 76.4
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 5.8e-49 197.6 127 76.4
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 7.6e-49 197.2 127 74.8
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 76.4
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 76.4
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 76.4
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.3e-48 196.4 127 76.4
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.3e-48 196.4 127 74.8
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 2.2e-48 195.7 127 75.6
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 2.2e-48 195.7 127 73.2
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 5.0e-48 194.5 120 76.7
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 1.1e-47 193.4 127 78.0
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.5e-47 192.2 125 72.0
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 4.2e-47 191.4 128 75.0
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.6e-46 189.5 124 73.4
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.0e-45 186.8 127 75.6
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.3e-45 186.4 111 77.5
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 5.1e-45 184.5 167 59.3
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 1.2e-41 173.3 127 70.1
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 2.5e-39 165.6 96 79.2
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.3e-35 153.3 105 74.3
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 6.9e-34 147.5 87 85.1
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 4.5e-33 144.8 82 84.1
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.7e-32 142.9 82 80.5
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 4.8e-27 124.8 76 81.6
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.1e-26 123.6 103 62.1
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 4.1e-26 121.7 76 77.6
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.2e-25 120.2 88 64.8
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 2.0e-25 119.4 89 68.5
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.8e-21 106.3 61 85.2
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 5.7e-20 101.3 67 76.1
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 9.7e-20 100.5 127 48.8
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.1e-18 97.1 77 70.1
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.1e-18 94.0 67 71.6
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 8.5e-16 87.4 82 48.8
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 1.2e-14 83.6 89 50.6
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 1.8e-13 79.7 51 78.4
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 2.3e-13 79.3 116 47.4
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 2.7e-09 65.9 59 47.5
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 2.5e-07 59.3 36 75.0


User provided reference genes

Program Settings