Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018011 Chenopodium quinoa HOM05D006745 ORTHO05D008449 8.9e-142 506.9 254 100.0
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 7.4e-88 327.8 196 86.7
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 6.7e-81 304.7 196 80.6
Cfa007050 Carpinus fangiana HOM05D006745 ORTHO05D008449 3.2e-75 285.8 183 76.5
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 4.2e-75 285.4 183 77.6
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 4.2e-75 285.4 183 77.0
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 7.2e-75 284.6 187 75.9
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 7.2e-75 284.6 183 76.5
QL06p051396 Quercus lobata HOM05D006745 ORTHO05D008449 2.1e-74 283.1 183 76.0
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 2.7e-74 282.7 191 74.3
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 2.7e-74 282.7 189 74.6
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 4.7e-74 282.0 188 73.9
vmacro18434 Vaccinium macrocarpon HOM05D006745 ORTHO05D008449 1.0e-73 280.8 183 76.0
CSS0026839 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 1.4e-73 280.4 188 75.0
Potri.005G109000 Populus trichocarpa HOM05D006745 ORTHO05D008449 1.4e-73 280.4 187 72.7
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 1.8e-73 280.0 183 74.9
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 2.3e-73 279.6 183 75.4
FAN19G0356 Fragaria x ananassa HOM05D006745 ORTHO05D008449 3.0e-73 279.3 188 73.4
Manes.01G150100 Manihot esculenta HOM05D006745 ORTHO05D008449 5.2e-73 278.5 190 72.6
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 5.2e-73 278.5 183 73.8
Oeu058205.1 Olea europaea HOM05D006745 ORTHO05D008449 5.2e-73 278.5 183 75.4
Oeu058207.1 Olea europaea HOM05D006745 ORTHO05D008449 5.2e-73 278.5 183 75.4
Sabra05G0089300 Salix brachista HOM05D006745 ORTHO05D008449 5.2e-73 278.5 187 72.2
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 8.8e-73 277.7 188 73.9
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 1.5e-72 276.9 190 72.6
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 1.5e-72 276.9 183 73.8
CSS0046970 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 2.0e-72 276.6 188 73.9
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 3.4e-72 275.8 183 73.8
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 4.4e-72 275.4 183 73.2
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 5.7e-72 275.0 189 72.0
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 5.7e-72 275.0 189 72.0
Ciclev10026368m.g Citrus clementina HOM05D006745 ORTHO05D008449 7.5e-72 274.6 183 72.1
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 7.5e-72 274.6 183 72.7
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 9.8e-72 274.2 183 73.2
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 9.8e-72 274.2 183 73.2
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 9.8e-72 274.2 188 71.8
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 9.8e-72 274.2 188 71.8
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 9.8e-72 274.2 188 71.8
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 1.3e-71 273.9 190 71.6
FAN23G2677 Fragaria x ananassa HOM05D006745 ORTHO05D008449 1.7e-71 273.5 188 72.3
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 1.7e-71 273.5 189 69.8
VMungo1215G1582 Vigna mungo HOM05D006745 ORTHO05D008449 2.8e-71 272.7 189 70.4
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 3.7e-71 272.3 188 69.7
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 4.8e-71 271.9 191 72.3
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 6.3e-71 271.6 183 72.1
FAN26G1827 Fragaria x ananassa HOM05D006745 ORTHO05D008449 8.3e-71 271.2 189 72.0
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 8.3e-71 271.2 183 74.3
Ah.02g123330 Amaranthus hybridus HOM05D006745 ORTHO05D008449 1.4e-70 270.4 188 75.0
Ca_24936_v3 Cicer arietinum L. HOM05D006745 ORTHO05D008449 1.8e-70 270.0 189 70.4
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 3.1e-70 269.2 188 71.8
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 3.1e-70 269.2 183 71.6
Eucgr.I02315 Eucalyptus grandis HOM05D006745 ORTHO05D008449 4.1e-70 268.9 183 72.1
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 4.1e-70 268.9 182 72.0
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 4.1e-70 268.9 189 68.8
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 5.4e-70 268.5 191 71.2
BcaC04g22675 Brassica carinata HOM05D006745 ORTHO05D008449 7.0e-70 268.1 185 72.4
CAN.G576.2 Capsicum annuum HOM05D006745 ORTHO05D008449 7.0e-70 268.1 183 72.1
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 7.0e-70 268.1 190 67.9
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 9.1e-70 267.7 183 73.2
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 1.2e-69 267.3 189 69.3
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 1.2e-69 267.3 183 73.8
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 1.6e-69 266.9 183 71.0
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 2.0e-69 266.5 172 75.0
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 2.7e-69 266.2 189 68.3
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 1.3e-68 263.8 186 68.8
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 2.9e-68 262.7 184 69.0
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 8.5e-68 261.2 183 69.9
Prupe.7G173600 Prunus persica HOM05D006745 ORTHO05D008449 1.9e-67 260.0 188 71.3
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 2.5e-67 259.6 182 70.3
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 2.5e-67 259.6 189 66.7
Os02g0120300 Oryza sativa ssp. japonica HOM05D006745 ORTHO05D008449 7.2e-67 258.1 182 68.7
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 7.2e-67 258.1 184 70.1
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 9.4e-67 257.7 183 67.8
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 9.4e-67 257.7 182 70.9
Nitab4.5_0000188g0160 Nicotiana tabacum HOM05D006745 ORTHO05D008449 6.1e-66 255.0 220 60.5
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 4.0e-65 252.3 182 68.1
ClCG01G020530 Citrullus lanatus HOM05D006745 ORTHO05D008449 1.7e-63 246.9 199 65.3
Thecc.01G012900 Theobroma cacao HOM05D006745 ORTHO05D008449 4.9e-63 245.4 183 68.3
Aqoxy6G02103 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 8.3e-63 244.6 184 65.8
CiPaw.07G062000 Carya illinoinensis HOM05D006745 ORTHO05D008449 1.1e-62 244.2 183 68.9
Duzib147G0156 Durio zibethinus HOM05D006745 ORTHO05D008449 1.1e-62 244.2 183 68.3
unitig_60.g25574 Utricularia gibba HOM05D006745 ORTHO05D008449 1.1e-62 244.2 215 60.0
CDE05G1799 Ceratophyllum demersum HOM05D006745 ORTHO05D008449 1.7e-60 236.9 173 66.5
CARHR047310 Cardamine hirsuta HOM05D006745 ORTHO05D008449 2.6e-56 223.0 160 70.0
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 1.8e-54 216.9 188 61.2
Atru.chr3.884 Acer truncatum HOM05D006745 ORTHO05D008449 2.4e-54 216.5 188 61.2
Atru.chr3.895 Acer truncatum HOM05D006745 ORTHO05D008449 2.4e-54 216.5 188 61.2
Thhalv10023706m.g Eutrema salsugineum HOM05D006745 ORTHO05D008449 5.4e-54 215.3 187 61.0
AT1G63855 Arabidopsis thaliana HOM05D006745 ORTHO05D008449 1.6e-53 213.8 190 59.5
CARHR047280 Cardamine hirsuta HOM05D006745 ORTHO05D008449 7.8e-53 211.5 137 72.3
SalBow3G1250 Salvia bowleyana HOM05D006745 ORTHO05D008449 1.1e-51 207.6 189 59.3
Peaxi162Scf00439g00049 Petunia axillaris HOM05D006745 ORTHO05D008449 2.8e-50 203.0 232 52.2
Sed0011409 Sechium edule HOM05D006745 ORTHO05D008449 2.8e-50 203.0 208 56.2
FvH4_1g11230 Fragaria vesca HOM05D006745 ORTHO05D008449 4.0e-49 199.1 139 70.5
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 4.0e-49 199.1 186 54.3
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 2.6e-48 196.4 186 53.2
arahy.Tifrunner.gnm1.ann1.N8WRPV Arachis hypogaea HOM05D006745 ORTHO05D008449 9.8e-48 194.5 141 67.4
FAN28G2493 Fragaria x ananassa HOM05D006745 ORTHO05D008449 2.2e-47 193.4 202 54.5
Aqoxy278s001 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 1.4e-46 190.7 162 61.7
SMO340G0117 Selaginella moellendorffii HOM05D006745 ORTHO05D008449 1.6e-45 187.2 183 51.9
CSS0012608 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 1.1e-43 181.0 184 58.2
Nitab4.5_0002337g0130 Nicotiana tabacum HOM05D006745 ORTHO05D008449 2.8e-42 176.4 168 56.0
Pp3c3_3178 Physcomitrium patens HOM05D006745 ORTHO05D008449 4.0e-41 172.6 186 50.5
Medtr3g096570 Medicago truncatula HOM05D006745 ORTHO05D008449 3.5e-37 159.5 117 65.8
Medtr3g096562 Medicago truncatula HOM05D006745 ORTHO05D008449 2.5e-35 153.3 116 64.7
Glyma.02G164500 Glycine max HOM05D006745 ORTHO05D008449 4.7e-34 149.1 93 69.9
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 1.5e-32 144.1 117 62.4
Hund14069 Selenicereus undatus HOM05D006745 ORTHO05D008449 7.3e-27 125.2 95 67.4
Rhsim01G0268300 Rhododendron simsii HOM05D006745 ORTHO05D008449 1.2e-21 107.8 91 59.3
BraA09t37044Z Brassica rapa HOM05D006745 ORTHO05D008449 1.1e-19 101.3 80 65.0
Medtr2g078490 Medicago truncatula HOM05D006745 ORTHO05D008449 4.3e-19 99.4 110 48.2
MSTRG.17961 Avicennia marina HOM05D006745 ORTHO05D008449 1.3e-18 97.8 78 65.4
COL.COLO4_22483 Corchorus olitorius HOM05D006745 ORTHO05D008449 3.5e-13 79.7 56 69.6
BolC4t24505H Brassica oleracea HOM05D006745 ORTHO05D008449 6.0e-13 79.0 69 59.4
SEGI_40099 Sequoiadendron giganteum HOM05D006745 ORTHO05D008449 3.9e-12 76.3 58 63.8
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 1.4e-09 67.8 146 35.6
AagrBONN_evm.TU.Sc2ySwM_362.258 Anthoceros agrestis HOM05D001602 ORTHO05D001470 4.2e-06 56.2 117 35.0
Thecc.01G143100 Theobroma cacao HOM05D001602 ORTHO05D001470 4.2e-06 56.2 118 38.1
Gohir.D12G086700 Gossypium hirsutum HOM05D001602 ORTHO05D001470 7.1e-06 55.5 107 38.3
Gorai.008G096900 Gossypium raimondii HOM05D001602 ORTHO05D001470 7.1e-06 55.5 107 38.3


User provided reference genes

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