Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 7.0e-299 1030.0 589 100.0
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 7.4e-240 833.9 703 72.1
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 1.1e-174 617.5 722 55.7
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 7.6e-168 594.7 527 67.7
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 2.2e-143 513.5 607 55.4
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 8.2e-138 495.0 625 51.7
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 9.0e-137 491.5 520 53.3
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.5e-136 489.2 518 56.0
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.3e-135 487.6 555 56.6
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 2.2e-135 486.9 530 56.6
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 4.9e-135 485.7 529 54.3
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 1.4e-134 484.2 543 55.8
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 3.5e-133 479.6 553 56.2
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.8e-132 477.2 534 55.6
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 3.0e-132 476.5 537 57.9
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 3.0e-132 476.5 538 56.5
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 5.1e-132 475.7 534 51.3
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 6.7e-132 475.3 516 54.1
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.1e-131 474.6 542 56.3
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.5e-131 474.2 519 58.0
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 4.3e-131 472.6 685 43.4
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 4.3e-131 472.6 685 43.4
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.6e-130 470.7 510 53.5
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 4.8e-130 469.2 521 58.9
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 8.2e-130 468.4 549 55.7
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 3.1e-129 466.5 515 53.2
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 5.3e-129 465.7 546 53.7
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 1.2e-128 464.5 513 53.8
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 2.6e-128 463.4 508 52.4
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 4.5e-128 462.6 510 51.8
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 4.5e-128 462.6 543 53.8
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 1.9e-126 457.2 581 52.5
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 4.2e-126 456.1 674 46.7
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 1.6e-125 454.1 543 51.2
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-124 450.7 537 55.1
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 3.0e-124 449.9 532 55.1
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 3.9e-124 449.5 527 53.7
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 8.8e-124 448.4 552 52.7
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 7.4e-123 445.3 530 54.7
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 3.1e-121 439.9 531 53.7
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.1e-121 439.5 510 56.5
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 9.1e-121 438.3 541 51.2
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 2.0e-120 437.2 530 51.1
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 7.7e-120 435.3 697 44.5
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.3e-119 434.5 553 50.8
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 8.5e-119 431.8 452 57.3
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 5.5e-118 429.1 531 52.7
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 5.5e-118 429.1 551 51.2
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 7.2e-118 428.7 524 53.4
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 1.2e-117 427.9 565 48.8
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 2.1e-117 427.2 539 50.3
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 3.6e-117 426.4 526 50.8
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 7.9e-117 425.2 538 52.6
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 1.8e-116 424.1 551 49.0
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 2.6e-115 420.2 524 52.9
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 4.4e-115 419.5 472 54.4
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 2.2e-114 417.2 565 50.4
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 2.4e-113 413.7 560 50.0
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 3.2e-110 403.3 538 50.7
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 3.6e-109 399.8 516 47.5
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 8.0e-109 398.7 554 49.8
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.8e-108 397.5 526 51.9
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 3.0e-108 396.7 515 50.9
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 3.0e-108 396.7 515 50.9
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 6.7e-108 395.6 526 47.1
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 3.3e-107 393.3 543 49.5
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 4.4e-107 392.9 537 49.5
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 7.4e-107 392.1 517 49.1
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 1.1e-105 388.3 528 48.7
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.1e-105 386.3 460 50.4
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 1.6e-104 384.4 537 49.5
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.3e-103 381.3 530 50.8
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 5.0e-103 379.4 553 48.8
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 6.5e-103 379.0 537 48.8
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 3.2e-102 376.7 517 49.7
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 7.2e-102 375.6 505 49.5
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 3.6e-101 373.2 526 48.9
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.8e-100 370.9 437 56.8
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 5.7e-99 365.9 554 47.5
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 5.7e-99 365.9 546 44.1
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.8e-97 360.9 508 45.3
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 5.0e-95 352.8 550 47.5
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 5.5e-94 349.4 547 44.2
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 6.1e-93 345.9 563 46.2
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 5.2e-92 342.8 553 47.6
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 5.2e-92 342.8 298 61.4
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 8.8e-92 342.0 536 45.1
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 4.8e-90 336.3 540 45.7
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 4.8e-90 336.3 539 44.9
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 1.8e-89 334.3 533 47.1
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 9.1e-89 332.0 540 44.8
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 3.5e-88 330.1 531 45.4
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 5.9e-88 329.3 528 44.7
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.3e-86 323.6 539 44.5
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 7.2e-86 322.4 536 44.6
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.2e-85 321.6 532 45.9
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 9.8e-83 312.0 669 36.9
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 8.3e-82 308.9 546 41.8
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 5.0e-79 299.7 540 40.2
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 1.9e-78 297.7 532 38.0
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 1.4e-76 291.6 404 51.0
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 6.8e-76 289.3 449 43.9
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 2.4e-73 280.8 546 39.6
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.0e-71 273.1 668 31.6
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 8.0e-69 265.8 438 39.3
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 3.1e-68 263.8 451 39.9
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.1e-60 238.8 209 57.9
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 6.8e-60 236.1 200 62.0
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 4.1e-57 226.9 579 35.4
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 7.3e-54 216.1 486 36.0
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 4.9e-50 203.4 288 49.0
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 7.8e-48 196.1 192 52.6
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 3.9e-47 193.7 165 56.4
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 3.9e-47 193.7 260 54.2
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.5e-46 191.0 491 32.0
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 3.6e-45 187.2 159 59.1
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 1.4e-44 185.3 733 29.2
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 7.1e-41 172.9 258 50.8
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 2.8e-37 161.0 584 30.8
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 9.9e-35 152.5 187 44.4
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.1e-33 149.1 242 35.5
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 4.6e-32 143.7 222 42.8
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 1.3e-29 135.6 407 29.2
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.3e-26 125.6 171 43.3
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 4.9e-26 123.6 301 41.9
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 1.9e-22 111.7 148 48.6
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 4.3e-22 110.5 91 61.5
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 2.1e-21 108.2 118 51.7
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.1e-20 105.9 208 32.2
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 2.0e-19 101.7 256 32.4
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.3e-18 99.0 121 49.6
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.9e-17 95.1 155 41.9
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 2.5e-17 94.7 111 45.0
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 1.6e-16 92.0 66 62.1
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.9e-14 85.1 323 29.1
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 1.6e-13 82.0 158 36.7
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.2e-09 67.4 44 68.2
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 5.5e-09 67.0 43 67.4
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.6e-08 64.3 102 46.1
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 2.3e-07 61.6 113 38.9
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 1.1e-06 59.3 113 36.3
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 1.1e-06 59.3 69 46.4
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 1.1e-06 59.3 87 48.3


User provided reference genes

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