Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 0.0e+00 1111.3 576 100.0
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.7e-268 929.1 568 88.2
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 4.8e-244 847.8 660 70.8
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 2.3e-241 839.0 653 68.9
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 5.4e-219 764.6 643 65.0
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 3.8e-196 688.7 655 59.1
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 6.9e-190 667.9 648 57.3
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 6.9e-190 667.9 648 57.7
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 7.6e-189 664.5 656 57.5
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 4.9e-188 661.8 641 58.5
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 3.2e-187 659.1 644 58.2
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 5.4e-187 658.3 649 57.2
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.0e-186 654.8 649 57.2
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.5e-184 650.2 637 57.1
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.9e-184 649.8 648 56.5
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.5e-184 649.4 652 56.4
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 2.5e-184 649.4 642 57.6
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 5.6e-184 648.3 651 56.8
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 7.4e-184 647.9 641 56.8
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 7.4e-184 647.9 653 56.2
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.4e-182 643.7 671 56.5
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.4e-182 643.7 650 56.2
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 1.4e-182 643.7 651 55.9
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 4.5e-181 638.6 651 56.1
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 1.3e-180 637.1 649 55.9
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.9e-180 636.0 649 56.1
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 2.9e-180 636.0 639 56.3
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 8.4e-180 634.4 660 56.1
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 8.4e-180 634.4 648 57.1
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 9.3e-179 630.9 651 57.1
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 2.1e-178 629.8 642 55.3
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 3.9e-177 625.5 640 55.8
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 5.1e-177 625.2 654 53.8
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 1.1e-176 624.0 656 54.0
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 1.5e-176 623.6 653 54.4
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.9e-176 623.2 630 56.2
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.9e-176 623.2 664 55.6
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 2.8e-175 619.4 643 54.0
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 6.2e-175 618.2 655 54.7
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 6.2e-175 618.2 695 52.7
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 3.1e-174 615.9 634 54.1
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 5.3e-174 615.1 657 55.9
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 4.5e-173 612.1 638 53.8
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.0e-172 610.9 653 54.8
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.0e-172 610.9 653 54.8
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 1.3e-172 610.5 656 53.4
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 3.8e-172 609.0 657 54.5
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 3.8e-172 609.0 638 55.0
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 4.9e-172 608.6 631 54.7
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 4.9e-172 608.6 650 55.1
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 6.5e-172 608.2 656 53.8
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 8.4e-172 607.8 647 52.6
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 2.5e-171 606.3 644 53.9
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 9.3e-171 604.4 648 55.1
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 2.7e-170 602.8 640 55.9
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 3.5e-170 602.4 671 52.2
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 6.0e-170 601.7 668 53.1
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 1.3e-169 600.5 648 54.2
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.8e-169 600.1 616 55.4
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 3.9e-169 599.0 647 53.0
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 5.1e-169 598.6 644 54.2
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 5.1e-169 598.6 645 52.1
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.1e-168 597.4 647 53.3
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 1.6e-167 593.6 648 53.7
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 2.2e-167 593.2 646 53.3
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.1e-166 590.9 647 53.5
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 9.0e-166 587.8 653 53.9
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 2.6e-165 586.3 647 53.3
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 1.7e-164 583.6 666 52.1
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.7e-164 583.6 649 52.5
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 3.8e-164 582.4 634 52.2
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.1e-163 580.9 643 52.4
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 1.8e-161 573.5 652 51.4
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 5.1e-161 572.0 647 52.4
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 7.4e-160 568.2 653 52.5
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.3e-159 567.4 654 52.1
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.4e-158 563.9 640 52.2
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 2.5e-155 553.1 649 51.6
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.2e-154 550.8 512 58.0
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.2e-154 550.8 640 51.2
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 2.3e-153 546.6 654 50.2
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 3.9e-153 545.8 639 49.6
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 7.0e-150 535.0 503 58.4
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 9.1e-150 534.6 521 58.5
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.0e-145 521.2 584 53.1
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.8e-143 513.1 484 58.3
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.8e-143 513.1 671 45.8
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 6.3e-143 511.9 511 56.9
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 6.1e-138 495.4 486 56.6
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.1e-134 483.0 526 51.0
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 3.2e-131 473.0 685 44.1
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 2.1e-130 470.3 651 45.3
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 2.7e-130 469.9 490 53.3
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 2.4e-126 456.8 656 42.8
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.6e-125 454.1 504 51.8
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 4.5e-125 452.6 693 43.1
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 8.0e-122 441.8 445 57.5
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 7.5e-112 408.7 494 49.2
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.9e-111 406.8 595 44.5
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 7.1e-102 375.6 633 39.0
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.2e-88 331.6 750 34.3
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 7.3e-83 312.4 393 51.4
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 3.1e-81 307.0 690 36.7
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 5.3e-81 306.2 338 53.8
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 2.3e-76 290.8 292 58.2
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.6e-74 284.6 410 47.6
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.5e-72 278.1 297 53.9
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 4.2e-70 270.0 293 54.9
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 3.9e-68 263.5 285 54.7
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 5.1e-68 263.1 278 52.9
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 7.4e-67 259.2 338 47.3
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.8e-63 246.9 513 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.6e-58 231.5 631 31.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.5e-54 216.5 191 62.8
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 5.1e-52 209.9 156 67.9
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 5.3e-49 199.9 478 33.7
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 2.6e-48 197.6 372 40.1
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 4.2e-46 190.3 181 56.4
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 2.0e-40 171.4 347 39.2
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.0e-36 157.5 112 70.5
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 4.2e-30 137.1 153 49.7
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 1.6e-29 135.2 177 48.0
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.2e-18 98.2 120 50.0
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.1e-17 94.4 55 85.5
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 8.5e-15 86.3 182 35.7
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.5e-14 85.5 159 37.1
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.5e-14 85.5 88 47.7
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 2.1e-13 81.6 65 61.5
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 5.2e-12 77.0 65 58.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.6e-11 74.7 59 64.4
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 3.4e-11 74.3 112 40.2
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 7.5e-11 73.2 215 33.0
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 7.0e-09 66.6 112 37.5
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 8.6e-07 59.7 48 62.5
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 8.6e-07 59.7 86 41.9


User provided reference genes

Program Settings