Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017921 Chenopodium quinoa HOM05D001093 ORTHO05D000743 4.9e-238 827.4 414 100.0
AUR62003610 Chenopodium quinoa HOM05D001093 ORTHO05D000743 1.0e-86 324.7 331 55.6
AUR62017920 Chenopodium quinoa HOM05D001093 ORTHO05D000743 8.8e-22 109.0 110 49.1
AUR62003609 Chenopodium quinoa HOM05D001093 ORTHO05D000743 1.1e-19 102.1 106 48.1
Dinv11327 Davidia involucrata HOM05D001093 ORTHO05D000743 3.1e-19 100.5 101 44.6
Sabra07G0090300 Salix brachista HOM05D001093 ORTHO05D000743 5.9e-18 96.3 139 35.3
Potri.007G110400 Populus trichocarpa HOM05D001093 ORTHO05D000743 1.3e-17 95.1 139 36.0
CSS0013878 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.8e-17 93.6 101 42.6
CSS0045835 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.8e-17 93.6 101 42.6
Medtr3g095800 Medicago truncatula HOM05D001093 ORTHO05D000743 3.8e-17 93.6 125 38.4
Nitab4.5_0002121g0010 Nicotiana tabacum HOM05D001093 ORTHO05D000743 1.9e-16 91.3 112 42.0
Dinv05707 Davidia involucrata HOM05D001093 ORTHO05D000743 4.3e-16 90.1 101 42.6
Cc07_g17870 Coffea canephora HOM05D001093 ORTHO05D000743 9.5e-16 89.0 399 24.3
SGA_v2.0_scaffold250G45002 Striga asiatica HOM05D001093 ORTHO05D000743 9.5e-16 89.0 140 35.0
Atru.chr5.93 Acer truncatum HOM05D001093 ORTHO05D000743 3.6e-15 87.0 427 26.7
Ah.02g121920 Amaranthus hybridus HOM05D001093 ORTHO05D000743 3.6e-15 87.0 108 43.5
Manes.12G152400 Manihot esculenta HOM05D001093 ORTHO05D000743 8.0e-15 85.9 101 39.6
Migut.H00747 Erythranthe guttata HOM05D001093 ORTHO05D000743 8.9e-14 82.4 382 26.7
TPR.G24060 Trifolium pratense HOM05D001093 ORTHO05D000743 1.2e-13 82.0 143 32.2
Solyc04g050720.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 1.5e-13 81.6 146 34.2
Sc02g0004330 Simmondsia chinensis HOM05D001093 ORTHO05D000743 2.6e-13 80.9 102 42.2
Ciclev10025832m.g Citrus clementina HOM05D001093 ORTHO05D000743 5.7e-13 79.7 105 40.0
THA.LOC104806851 Tarenaya hassleriana HOM05D001093 ORTHO05D000743 1.3e-12 78.6 131 35.1
Peaxi162Scf00842g00328 Petunia axillaris HOM05D001093 ORTHO05D000743 1.7e-12 78.2 392 23.0
Cc10_g14180 Coffea canephora HOM05D001093 ORTHO05D000743 2.2e-12 77.8 101 36.6
Dinv41107 Davidia involucrata HOM05D001093 ORTHO05D000743 2.2e-12 77.8 120 31.7
Sed0006161 Sechium edule HOM05D001093 ORTHO05D000743 2.2e-12 77.8 101 37.6
Cpa.g.sc49.44 Carica papaya HOM05D001093 ORTHO05D000743 2.9e-12 77.4 121 36.4
Lsat_1_v5_gn_8_117260 Lactuca sativa HOM05D001093 ORTHO05D000743 2.9e-12 77.4 112 39.3
arahy.Tifrunner.gnm1.ann1.43LRWI Arachis hypogaea HOM05D001093 ORTHO05D000743 3.7e-12 77.0 137 34.3
arahy.Tifrunner.gnm1.ann1.U9V461 Arachis hypogaea HOM05D001093 ORTHO05D000743 3.7e-12 77.0 137 34.3
Glyma.04G214800 Glycine max HOM05D001093 ORTHO05D000743 3.7e-12 77.0 101 41.6
Duzib116G0600 Durio zibethinus HOM05D001093 ORTHO05D000743 4.9e-12 76.6 379 24.0
Nitab4.5_0013142g0020 Nicotiana tabacum HOM05D001093 ORTHO05D000743 6.4e-12 76.3 123 32.5
Migut.N03229 Erythranthe guttata HOM05D001093 ORTHO05D000743 8.3e-12 75.9 101 37.6
Nitab4.5_0004813g0020 Nicotiana tabacum HOM05D001093 ORTHO05D000743 8.3e-12 75.9 400 26.2
Phvul.007G078100 Phaseolus vulgaris HOM05D001093 ORTHO05D000743 8.3e-12 75.9 129 34.9
AL1G51860 Arabidopsis lyrata HOM05D001093 ORTHO05D000743 1.1e-11 75.5 116 37.9
Nitab4.5_0000138g0040 Nicotiana tabacum HOM05D001093 ORTHO05D000743 1.8e-11 74.7 123 32.5
Solyc04g009400.4 Solanum lycopersicum HOM05D001093 ORTHO05D000743 1.8e-11 74.7 105 36.2
Sopen04g004530 Solanum pennellii HOM05D001093 ORTHO05D000743 1.8e-11 74.7 105 36.2
Nitab4.5_0004819g0010 Nicotiana tabacum HOM05D001093 ORTHO05D000743 2.4e-11 74.3 405 25.4
Sp1g32760 Schrenkiella parvula HOM05D001093 ORTHO05D000743 2.4e-11 74.3 130 35.4
ATR0772G157 Amborella trichopoda HOM05D001093 ORTHO05D000743 3.2e-11 73.9 119 34.5
Sopen11g001700 Solanum pennellii HOM05D001093 ORTHO05D000743 3.2e-11 73.9 391 24.6
PGSC0003DMG400028673 Solanum tuberosum HOM05D001093 ORTHO05D000743 3.2e-11 73.9 425 25.2
Nitab4.5_0000504g0100 Nicotiana tabacum HOM05D001093 ORTHO05D000743 4.1e-11 73.6 402 24.1
Psat5g062080 Pisum sativum HOM05D001093 ORTHO05D000743 4.1e-11 73.6 103 40.8
PSO675G4714 Papaver somniferum HOM05D001093 ORTHO05D000743 5.4e-11 73.2 100 40.0
Prupe.8G022600 Prunus persica HOM05D001093 ORTHO05D000743 5.4e-11 73.2 102 42.2
Solyc04g009390.2 Solanum lycopersicum HOM05D001093 ORTHO05D000743 5.4e-11 73.2 101 36.6
Solyc11g005740.2 Solanum lycopersicum HOM05D001093 ORTHO05D000743 5.4e-11 73.2 391 24.3
Nn1g06166 Nelumbo nucifera HOM05D001093 ORTHO05D000743 7.0e-11 72.8 117 37.6
PSO541G5809 Papaver somniferum HOM05D001093 ORTHO05D000743 7.0e-11 72.8 100 40.0
Medtr5g098320 Medicago truncatula HOM05D001093 ORTHO05D000743 9.2e-11 72.4 130 33.1
Actinidia01147 Actinidia chinensis HOM05D001093 ORTHO05D000743 1.2e-10 72.0 101 36.6
Thhalv10011612m.g Eutrema salsugineum HOM05D001093 ORTHO05D000743 1.2e-10 72.0 121 39.7
Peaxi162Scf00071g00201 Petunia axillaris HOM05D001093 ORTHO05D000743 1.2e-10 72.0 421 22.3
Dinv25836 Davidia involucrata HOM05D001093 ORTHO05D000743 1.6e-10 71.6 101 38.6
PSO541G3559 Papaver somniferum HOM05D001093 ORTHO05D000743 1.6e-10 71.6 102 38.2
Sopen04g004510 Solanum pennellii HOM05D001093 ORTHO05D030672 1.6e-10 71.6 128 33.6
Cpa.g.sc49.46 Carica papaya HOM05D001093 ORTHO05D000743 2.0e-10 71.2 123 34.1
Migut.C01021 Erythranthe guttata HOM05D001093 ORTHO05D000743 2.0e-10 71.2 130 33.8
ATR0064G095 Amborella trichopoda HOM05D001093 ORTHO05D000743 2.7e-10 70.9 94 40.4
Potri.005G173200 Populus trichocarpa HOM05D001093 ORTHO05D000743 2.7e-10 70.9 398 25.4
Ciclev10000763m.g Citrus clementina HOM05D001093 ORTHO05D000743 3.5e-10 70.5 202 29.2
DCAR_010276 Daucus carota HOM05D001093 ORTHO05D000743 3.5e-10 70.5 105 36.2
CAN.G4.14 Capsicum annuum HOM05D001093 ORTHO05D000743 4.6e-10 70.1 427 23.2
Lj5g0005381 Lotus japonicus HOM05D001093 ORTHO05D000743 5.9e-10 69.7 137 32.8
CiPaw.15G019400 Carya illinoinensis HOM05D001093 ORTHO05D000743 7.8e-10 69.3 104 37.5
Migut.C01022 Erythranthe guttata HOM05D001093 ORTHO05D000743 7.8e-10 69.3 101 34.7
HanXRQChr09g0258361 Helianthus annuus HOM05D001093 ORTHO05D000743 7.8e-10 69.3 102 34.3
Thecc.08G147000 Theobroma cacao HOM05D001093 ORTHO05D000743 7.8e-10 69.3 101 35.6
MELO3C024101.2 Cucumis melo HOM05D001093 ORTHO05D000743 2.3e-09 67.8 101 33.7
Lj2g0008242 Lotus japonicus HOM05D001093 ORTHO05D000743 2.3e-09 67.8 126 34.9
Glyma.10G227200 Glycine max HOM05D001093 ORTHO05D000743 3.0e-09 67.4 121 28.9
Glyma.20G165200 Glycine max HOM05D001093 ORTHO05D000743 3.0e-09 67.4 124 31.5
CDE08G1401 Ceratophyllum demersum HOM05D001093 ORTHO05D000743 3.9e-09 67.0 102 34.3
Migut.C01024 Erythranthe guttata HOM05D001093 ORTHO05D000743 3.9e-09 67.0 100 36.0
Sabra05G0130700 Salix brachista HOM05D001093 ORTHO05D000743 3.9e-09 67.0 393 24.2
HPP92_020444 Vanilla planifolia HOM05D001093 ORTHO05D000743 3.9e-09 67.0 125 32.8
CSS0005802 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 5.0e-09 66.6 101 34.7
CSS0044048 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 5.0e-09 66.6 101 34.7
Migut.C01023 Erythranthe guttata HOM05D001093 ORTHO05D000743 5.0e-09 66.6 206 28.6
Lalb_Chr06g0161481 Lupinus albus HOM05D001093 ORTHO05D000743 5.0e-09 66.6 122 33.6
Peaxi162Scf01184g00141 Petunia axillaris HOM05D001093 ORTHO05D000743 5.0e-09 66.6 170 28.8
Sopen04g021630 Solanum pennellii HOM05D001093 ORTHO05D000743 5.0e-09 66.6 422 23.5
FAN11G1971 Fragaria x ananassa HOM05D001093 ORTHO05D000743 6.6e-09 66.2 100 39.0
RcHm_v2.0_Chr6g0276691 Rosa chinensis HOM05D001093 ORTHO05D000743 6.6e-09 66.2 101 37.6
GSVIVG01001662001 Vitis vinifera HOM05D001093 ORTHO05D000743 6.6e-09 66.2 74 39.2
Lj2g0007742 Lotus japonicus HOM05D001093 ORTHO05D000743 8.6e-09 65.9 128 33.6
MD05G1018500 Malus domestica HOM05D001093 ORTHO05D000743 8.6e-09 65.9 119 36.1
MD10G1018200 Malus domestica HOM05D001093 ORTHO05D000743 8.6e-09 65.9 178 29.8
Nn3g17441 Nelumbo nucifera HOM05D001093 ORTHO05D000743 8.6e-09 65.9 95 36.8
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.1e-08 65.5 82 48.8
ECA232G2941 Erigeron canadensis HOM05D001093 ORTHO05D000743 1.1e-08 65.5 120 31.7
CsaV3_7G024810 Cucumis sativus L. HOM05D001093 ORTHO05D000743 1.5e-08 65.1 101 33.7
QL02p024630 Quercus lobata HOM05D001093 ORTHO05D000743 1.5e-08 65.1 117 34.2
MSTRG.1367 Avicennia marina HOM05D001093 ORTHO05D000743 1.9e-08 64.7 100 34.0
COL.COLO4_08293 Corchorus olitorius HOM05D001093 ORTHO05D000743 1.9e-08 64.7 119 32.8
Nitab4.5_0013462g0030 Nicotiana tabacum HOM05D001093 ORTHO05D000743 1.9e-08 64.7 59 49.2
SalBow6G2465 Salvia bowleyana HOM05D001093 ORTHO05D000743 1.9e-08 64.7 102 34.3
PSO675G5193 Papaver somniferum HOM05D001093 ORTHO05D000743 2.5e-08 64.3 137 32.1
SGA_v2.0_scaffold24G10372 Striga asiatica HOM05D001093 ORTHO05D000743 2.5e-08 64.3 98 36.7
MBI19_g05297_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D000743 3.3e-08 63.9 97 34.0
PGSC0003DMG402000788 Solanum tuberosum HOM05D001093 ORTHO05D000743 3.3e-08 63.9 103 33.0
Lj7A367T45 Lonicera japonica HOM05D001093 ORTHO05D000743 4.3e-08 63.5 260 25.8
Psat6g194360 Pisum sativum HOM05D001093 ORTHO05D000743 4.3e-08 63.5 105 33.3
Lj4C851G10 Lonicera japonica HOM05D001093 ORTHO05D000743 5.6e-08 63.2 59 45.8
A06p03830 Brassica napus HOM05D001093 ORTHO05D000743 7.3e-08 62.8 121 32.2
BraA06t23590Z Brassica rapa HOM05D001093 ORTHO05D000743 7.3e-08 62.8 120 33.3
SEGI_03967 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 7.3e-08 62.8 98 36.7
SEGI_04156 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 7.3e-08 62.8 98 36.7
C06p04250 Brassica napus HOM05D001093 ORTHO05D000743 9.5e-08 62.4 120 33.3
BolC6t35549H Brassica oleracea HOM05D001093 ORTHO05D000743 9.5e-08 62.4 120 33.3
Potri.005G189400 Populus trichocarpa HOM05D001093 ORTHO05D000743 9.5e-08 62.4 104 32.7
Carub.0001s3475 Capsella rubella HOM05D001093 ORTHO05D000743 1.2e-07 62.0 103 33.0
COL.COLO4_17047 Corchorus olitorius HOM05D001093 ORTHO05D000743 1.2e-07 62.0 106 34.0
Manes.18G089400 Manihot esculenta HOM05D001093 ORTHO05D000743 1.2e-07 62.0 466 23.4
SHI09430 Sapria himalayana HOM05D001093 ORTHO05D000743 1.2e-07 62.0 79 36.7
SEGI_01537 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 1.2e-07 62.0 109 33.0
Dinv24318 Davidia involucrata HOM05D001093 ORTHO05D000743 2.1e-07 61.2 62 45.2
Atru.chr13.2236 Acer truncatum HOM05D001093 ORTHO05D000743 2.8e-07 60.8 83 33.7
AUR62013521 Chenopodium quinoa HOM05D001093 ORTHO05D000743 2.8e-07 60.8 259 26.6
BcaC08g43143 Brassica carinata HOM05D001093 ORTHO05D000743 3.6e-07 60.5 126 32.5
Ca_10694_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 3.6e-07 60.5 106 34.9
ECA247G2835 Erigeron canadensis HOM05D001093 ORTHO05D000743 3.6e-07 60.5 96 31.2
FAN27G2937 Fragaria x ananassa HOM05D001093 ORTHO05D000743 3.6e-07 60.5 100 36.0
RcHm_v2.0_Chr3g0451401 Rosa chinensis HOM05D001093 ORTHO05D000743 3.6e-07 60.5 109 32.1
SGA_v2.0_scaffold48G17958 Striga asiatica HOM05D001093 ORTHO05D000743 3.6e-07 60.5 100 33.0
Haze_17729 Corylus avellana HOM05D000026 ORTHO05D001292 4.7e-07 60.1 379 22.4
Medtr6g044600 Medicago truncatula HOM05D001093 ORTHO05D000743 4.7e-07 60.1 139 28.8
Os03g0421000 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 4.7e-07 60.1 109 30.3
Sabra13G0067000 Salix brachista HOM05D001093 ORTHO05D000743 4.7e-07 60.1 95 36.8
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 4.7e-07 60.1 116 28.4
Lsat_1_v5_gn_3_106880 Lactuca sativa HOM05D001093 ORTHO05D000743 6.2e-07 59.7 125 32.8
Potri.013G077900 Populus trichocarpa HOM05D001093 ORTHO05D000743 6.2e-07 59.7 101 34.7
ECA236G3128 Erigeron canadensis HOM05D001093 ORTHO05D000743 8.0e-07 59.3 409 21.5
FvH4_3g26810 Fragaria vesca HOM05D001093 ORTHO05D000743 1.1e-06 58.9 100 36.0
Peaxi162Scf00263g00923 Petunia axillaris HOM05D001093 ORTHO05D000743 1.1e-06 58.9 103 32.0
FvH4_6g03141 Fragaria vesca HOM05D001093 ORTHO05D000743 1.4e-06 58.5 102 32.4
Aqoxy3G00533 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 1.8e-06 58.2 96 32.3
Oeu032979.1 Olea europaea HOM05D001093 ORTHO05D000743 1.8e-06 58.2 58 44.8
Psat0s667g0240 Pisum sativum HOM05D001093 ORTHO05D000743 1.8e-06 58.2 119 33.6
Ca_19334_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 2.3e-06 57.8 126 31.0
Nitab4.5_0004105g0040 Nicotiana tabacum HOM05D001093 ORTHO05D000743 2.3e-06 57.8 55 45.5
Sc07g0008720 Simmondsia chinensis HOM05D001093 ORTHO05D000743 3.1e-06 57.4 104 34.6
Sopen06g024610 Solanum pennellii HOM05D008195 ORTHO05D000743 3.1e-06 57.4 117 27.4
AUR62026754 Chenopodium quinoa HOM05D001093 ORTHO05D000743 4.0e-06 57.0 260 24.6
COL.COLO4_31236 Corchorus olitorius HOM05D001093 ORTHO05D000743 4.0e-06 57.0 80 41.2
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 5.2e-06 56.6 228 25.9
PGSC0003DMG400024640 Solanum tuberosum HOM05D008195 ORTHO05D000743 5.2e-06 56.6 138 29.7
PGSC0003DMG400037482 Solanum tuberosum HOM05D001093 ORTHO05D000743 5.2e-06 56.6 59 44.1
TPR.G37844 Trifolium pratense HOM05D001093 ORTHO05D000743 5.2e-06 56.6 139 28.1
SEGI_31466 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 6.8e-06 56.2 76 39.5
VMungo1309G3100 Vigna mungo HOM05D001093 ORTHO05D000743 6.8e-06 56.2 62 40.3
FAN16G2856 Fragaria x ananassa HOM05D001093 ORTHO05D000743 8.9e-06 55.8 63 46.0
SalBow2G0165 Salvia bowleyana HOM05D001093 ORTHO05D000743 8.9e-06 55.8 94 35.1
Sopen06g024280 Solanum pennellii HOM05D008195 ORTHO05D000743 8.9e-06 55.8 76 35.5
SGA_v2.0_scaffold313G48311 Striga asiatica HOM05D001093 ORTHO05D000743 8.9e-06 55.8 158 27.8
VMungo1215G2662 Vigna mungo HOM05D001093 ORTHO05D000743 8.9e-06 55.8 107 33.6
Zm00001eb024600 Zea mays HOM05D001093 ORTHO05D000743 8.9e-06 55.8 103 35.0


User provided reference genes

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