Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 1.6e-172 609.4 308 100.0
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 1.1e-125 453.8 312 77.2
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.2e-119 433.7 309 73.5
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 6.2e-113 411.4 298 72.8
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 6.9e-112 407.9 296 69.6
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.2e-111 407.1 295 70.8
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 1.2e-111 407.1 303 70.0
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 2.6e-111 406.0 315 67.0
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.6e-111 406.0 291 71.5
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 4.4e-111 405.2 293 69.3
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 5.8e-111 404.8 291 71.1
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 9.9e-111 404.1 295 69.5
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 1.3e-110 403.7 293 70.3
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.2e-110 402.9 304 68.1
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 2.2e-110 402.9 303 68.6
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 6.4e-110 401.4 312 66.0
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 6.4e-110 401.4 312 66.0
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 8.4e-110 401.0 295 70.2
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.4e-110 401.0 295 68.8
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 1.1e-109 400.6 295 68.5
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.1e-109 400.6 306 67.0
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.9e-109 399.8 303 68.0
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 2.4e-109 399.4 295 68.5
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 3.2e-109 399.1 303 67.3
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 4.2e-109 398.7 297 67.3
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 7.1e-109 397.9 295 67.5
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 7.1e-109 397.9 314 65.9
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 7.1e-109 397.9 293 69.3
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 7.1e-109 397.9 293 68.9
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 9.3e-109 397.5 294 68.0
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 1.2e-108 397.1 308 65.6
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.2e-108 397.1 295 67.1
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 1.2e-108 397.1 316 65.8
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 1.2e-108 397.1 293 69.3
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 1.6e-108 396.7 305 66.9
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.6e-108 396.7 295 68.5
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 1.6e-108 396.7 312 65.7
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 2.7e-108 396.0 335 63.3
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 3.5e-108 395.6 302 66.2
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.5e-108 395.6 304 68.1
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 4.6e-108 395.2 294 67.7
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 4.6e-108 395.2 313 65.5
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 1.0e-107 394.0 295 67.8
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 1.0e-107 394.0 305 66.6
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 1.7e-107 393.3 303 67.0
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.9e-107 392.1 307 66.1
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 3.9e-107 392.1 299 66.6
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 5.1e-107 391.7 297 67.3
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 5.1e-107 391.7 293 68.6
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.6e-107 391.3 320 64.7
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 6.6e-107 391.3 310 66.1
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.5e-106 390.2 291 69.1
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 1.5e-106 390.2 288 68.8
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 2.5e-106 389.4 295 68.5
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 2.5e-106 389.4 293 68.6
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 2.5e-106 389.4 293 68.6
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 4.3e-106 388.7 295 67.8
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 9.6e-106 387.5 293 66.2
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 1.3e-105 387.1 318 63.2
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 2.1e-105 386.3 279 69.9
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 4.8e-105 385.2 298 64.1
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 1.8e-104 383.3 299 63.5
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 1.8e-104 383.3 299 63.5
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 4.0e-104 382.1 298 63.8
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 6.9e-104 381.3 298 64.4
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 1.2e-103 380.6 298 64.1
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 2.0e-103 379.8 299 63.2
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.3e-102 377.1 307 61.6
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 1.7e-102 376.7 294 65.0
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 1.7e-102 376.7 298 63.8
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 1.7e-102 376.7 298 63.8
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 4.9e-102 375.2 305 63.3
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 4.9e-102 375.2 305 63.3
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 4.9e-102 375.2 296 67.2
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 8.4e-102 374.4 280 67.5
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 8.4e-102 374.4 310 63.9
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.9e-101 373.2 282 68.1
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.6e-100 370.2 290 66.2
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 7.9e-100 367.9 281 67.6
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 7.9e-100 367.9 292 63.7
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.8e-99 366.7 305 62.0
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 5.1e-99 365.2 298 62.4
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 8.7e-99 364.4 398 52.0
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 1.1e-98 364.0 287 63.8
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 1.5e-98 363.6 312 61.2
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 6.2e-97 358.2 297 61.6
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 6.2e-97 358.2 297 61.6
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 8.1e-97 357.8 304 62.5
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 1.1e-96 357.5 297 61.6
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 1.1e-96 357.5 297 61.6
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 2.4e-96 356.3 297 60.9
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 9.0e-96 354.4 314 59.6
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 5.8e-95 351.7 307 60.3
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 2.9e-94 349.4 437 47.8
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 5.5e-93 345.1 292 62.3
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.7e-92 342.8 234 79.5
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 3.5e-92 342.4 319 59.9
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 1.0e-91 340.9 291 61.5
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 3.0e-91 339.3 285 62.1
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 9.6e-90 334.3 298 60.4
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 6.2e-89 331.6 329 57.8
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 1.8e-88 330.1 346 52.0
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 9.0e-88 327.8 258 66.3
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 3.4e-87 325.9 314 57.6
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 3.8e-86 322.4 267 63.7
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 3.8e-86 322.4 253 65.6
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 6.0e-84 315.1 292 58.2
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 6.0e-84 315.1 231 68.0
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 1.3e-83 313.9 232 67.2
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 1.5e-82 310.5 302 57.6
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 1.4e-80 303.9 214 76.2
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 1.2e-79 300.8 274 58.4
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 1.7e-73 280.4 488 38.3
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 3.1e-72 276.2 180 77.8
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 3.1e-72 276.2 197 72.1
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 1.5e-71 273.9 172 79.1
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 5.9e-71 271.9 182 74.2
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 6.1e-68 261.9 214 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.9e-67 259.2 290 50.3
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 2.6e-63 246.5 292 50.3
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 5.9e-63 245.4 223 58.7
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 4.8e-57 225.7 261 49.8
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 1.2e-50 204.5 136 76.5
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 5.2e-35 152.5 266 36.5
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.0e-34 150.6 258 38.4
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 2.8e-33 146.7 79 97.5
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 2.9e-25 120.2 285 34.7
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.9e-21 107.5 83 67.5
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 3.1e-19 100.1 160 39.4
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 2.0e-18 97.4 63 76.2
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.4e-18 96.7 61 75.4
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 4.4e-18 96.3 61 75.4
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 1.3e-17 94.7 61 75.4
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.9e-17 92.8 61 73.8
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.9e-17 92.8 61 73.8
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-16 90.1 61 68.9
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-16 90.1 61 68.9
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 3.2e-16 90.1 61 68.9
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.2e-16 90.1 61 68.9
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.1e-16 89.7 61 68.9
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 2.1e-15 87.4 61 65.6
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 1.9e-13 80.9 50 78.0
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 3.6e-12 76.6 156 35.9
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 2.6e-10 70.5 245 25.3
Cre10.g431350 Chlamydomonas reinhardtii HOM05D039848 ORTHO05D028745 2.2e-09 67.4 160 29.4


User provided reference genes

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