Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 3.6e-280 967.6 494 100.0
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.7e-277 958.7 495 99.2
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 5.4e-252 874.0 497 90.1
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 9.3e-228 793.5 504 81.7
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 4.6e-203 711.4 501 72.7
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 2.8e-192 675.6 502 67.3
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 3.1e-191 672.2 505 68.5
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 4.5e-190 668.3 498 67.3
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 2.2e-189 666.0 497 68.6
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 2.9e-189 665.6 503 68.4
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 3.8e-189 665.2 504 67.5
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 5.0e-189 664.8 491 68.0
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 6.5e-189 664.5 502 67.1
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 8.5e-189 664.1 495 67.5
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 5.5e-188 661.4 507 66.7
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 5.5e-188 661.4 507 66.7
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 7.2e-188 661.0 492 66.7
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 3.6e-187 658.7 497 67.8
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 6.1e-187 657.9 504 67.5
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 1.4e-186 656.8 498 67.7
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 6.7e-186 654.4 492 67.3
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 8.8e-186 654.1 504 67.3
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 2.0e-185 652.9 504 67.9
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 3.3e-185 652.1 504 66.7
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 7.5e-185 651.0 503 66.2
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 9.7e-185 650.6 493 67.7
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 2.2e-184 649.4 494 66.2
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 2.2e-184 649.4 494 66.2
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 8.2e-184 647.5 503 65.6
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 3.1e-183 645.6 498 67.3
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 4.1e-183 645.2 492 67.5
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 2.7e-182 642.5 492 66.5
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 3.8e-181 638.6 494 65.4
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 6.5e-181 637.9 494 65.8
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 8.5e-181 637.5 492 66.3
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.1e-180 637.1 468 69.4
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 1.1e-180 637.1 492 66.3
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.5e-180 636.7 504 65.3
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.2e-179 633.6 468 69.2
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 2.7e-179 632.5 492 65.7
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.7e-179 632.5 504 64.9
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 8.0e-179 630.9 468 68.8
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 1.0e-178 630.6 493 65.1
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 3.0e-178 629.0 494 65.2
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.6e-177 625.9 493 64.3
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 9.8e-177 624.0 493 64.3
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 1.3e-176 623.6 490 66.1
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 2.2e-176 622.9 493 64.7
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 2.2e-176 622.9 492 65.0
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 3.7e-176 622.1 493 65.7
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 4.8e-176 621.7 507 64.9
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.3e-176 621.3 493 64.3
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 4.1e-175 618.6 492 65.2
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 4.1e-175 618.6 505 63.4
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.6e-174 616.7 492 64.0
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 2.7e-174 615.9 500 64.8
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 1.0e-173 614.0 497 64.0
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 1.3e-173 613.6 505 63.2
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 2.9e-173 612.5 493 63.3
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 7.2e-172 607.8 495 63.6
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 9.5e-172 607.4 495 64.4
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.2e-171 607.1 506 63.2
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 1.6e-171 606.7 505 62.8
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 2.8e-171 605.9 514 61.9
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 4.7e-171 605.1 495 63.2
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 6.1e-171 604.7 494 61.1
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 5.2e-170 601.7 494 62.8
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 1.7e-168 596.7 501 62.1
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 9.2e-167 590.9 503 62.6
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 1.7e-165 586.6 465 66.0
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 2.3e-165 586.3 497 60.4
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 1.1e-164 583.9 500 60.0
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 7.3e-164 581.3 507 59.8
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 2.1e-163 579.7 486 63.2
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 5.2e-162 575.1 510 59.2
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.5e-161 573.5 432 67.4
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.5e-161 573.5 497 60.8
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 7.5e-161 571.2 433 65.1
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 1.1e-159 567.4 464 61.6
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.0e-159 564.7 499 60.9
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 1.2e-158 563.9 506 58.5
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.7e-157 560.1 495 60.2
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 3.9e-157 558.9 501 60.9
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 1.9e-156 556.6 464 60.6
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 7.3e-156 554.7 505 60.0
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.2e-155 553.9 497 58.8
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 4.7e-155 552.0 498 60.0
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.8e-154 550.1 498 59.8
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 6.8e-154 548.1 431 64.0
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 5.8e-153 545.0 507 57.4
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.7e-152 543.5 513 57.3
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 8.3e-152 541.2 502 58.2
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 5.4e-151 538.5 492 57.7
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 5.4e-151 538.5 492 57.5
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 1.6e-150 537.0 494 56.7
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 2.0e-150 536.6 492 57.5
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 2.0e-150 536.6 492 57.1
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 3.9e-149 532.3 517 55.1
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 3.9e-149 532.3 494 57.3
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 1.1e-148 530.8 498 57.0
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 4.3e-148 528.9 493 55.8
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 5.6e-148 528.5 499 56.7
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 2.3e-146 523.1 495 56.4
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 2.3e-146 523.1 497 56.1
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 8.9e-146 521.2 498 57.0
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 2.0e-145 520.0 508 57.5
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 2.6e-145 519.6 496 57.1
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 4.4e-145 518.8 502 56.4
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 4.4e-145 518.8 502 56.4
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 1.9e-143 513.5 497 56.3
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 1.2e-142 510.8 426 60.6
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 7.8e-142 508.1 479 57.0
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 3.6e-139 499.2 491 54.0
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 3.9e-133 479.2 500 52.4
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.3e-132 474.9 496 52.8
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 2.1e-131 473.4 524 50.4
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 2.8e-131 473.0 494 53.0
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 1.1e-127 461.1 421 55.6
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 1.1e-122 444.5 523 48.6
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.1e-114 417.9 527 44.6
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 1.4e-111 407.5 525 44.0
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 6.9e-98 362.1 506 45.7
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 3.6e-86 323.2 261 62.1
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 6.1e-86 322.4 306 55.6
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 8.2e-83 312.0 500 38.6
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 2.6e-81 307.0 396 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.7e-80 304.3 457 39.8
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 2.2e-80 303.9 502 38.0
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 1.9e-79 300.8 237 64.1
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 2.5e-79 300.4 510 36.9
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 4.2e-63 246.5 233 54.1
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 9.4e-63 245.4 198 64.6
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 8.0e-46 189.1 132 68.9
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.7e-43 181.4 242 44.6
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 4.4e-12 77.0 214 26.6
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 1.5e-07 62.0 136 34.6
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 3.6e-06 57.4 66 50.0


User provided reference genes

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