Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 2.2e-37 158.3 71 100.0
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 3.1e-15 84.7 36 100.0
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 1.5e-14 82.4 36 94.4
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 5.8e-14 80.5 37 89.2
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 8.3e-13 76.6 36 86.1
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.6e-11 72.4 38 81.6
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 2.7e-11 71.6 38 81.6
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 4.6e-11 70.9 38 78.9
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 4.6e-11 70.9 38 81.6
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 4.6e-11 70.9 36 77.8
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 6.0e-11 70.5 36 77.8
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 6.0e-11 70.5 36 80.6
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 6.0e-11 70.5 36 77.8
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 7.8e-11 70.1 36 77.8
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 7.8e-11 70.1 36 80.6
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 7.8e-11 70.1 36 77.8
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.0e-10 69.7 38 76.3
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 1.0e-10 69.7 37 81.1
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 1.0e-10 69.7 39 74.4
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.3e-10 69.3 36 77.8
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 1.3e-10 69.3 36 77.8
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.3e-10 69.3 36 80.6
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 2.3e-10 68.6 35 82.9
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 2.3e-10 68.6 36 77.8
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 2.3e-10 68.6 36 83.3
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 3.9e-10 67.8 36 77.8
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 3.9e-10 67.8 36 77.8
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 3.9e-10 67.8 36 75.0
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 3.9e-10 67.8 37 78.4
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 5.1e-10 67.4 36 80.6
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 5.1e-10 67.4 37 75.7
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 5.1e-10 67.4 36 77.8
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 5.1e-10 67.4 36 80.6
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 5.1e-10 67.4 36 80.6
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 5.1e-10 67.4 36 80.6
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 6.6e-10 67.0 36 77.8
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 6.6e-10 67.0 36 77.8
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 6.6e-10 67.0 36 77.8
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 6.6e-10 67.0 36 80.6
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 6.6e-10 67.0 36 77.8
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 8.6e-10 66.6 36 77.8
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 8.6e-10 66.6 36 77.8
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 8.6e-10 66.6 36 77.8
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 1.1e-09 66.2 36 75.0
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 1.1e-09 66.2 36 75.0
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 1.1e-09 66.2 36 75.0
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 1.1e-09 66.2 36 75.0
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 1.1e-09 66.2 38 76.3
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 1.5e-09 65.9 36 75.0
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 1.5e-09 65.9 35 80.0
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 1.5e-09 65.9 36 77.8
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 1.5e-09 65.9 35 80.0
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.9e-09 65.5 36 75.0
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 1.9e-09 65.5 36 72.2
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.9e-09 65.5 36 77.8
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.9e-09 65.5 36 77.8
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 1.9e-09 65.5 36 77.8
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 1.9e-09 65.5 36 75.0
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 1.9e-09 65.5 36 75.0
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 1.9e-09 65.5 36 77.8
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 1.9e-09 65.5 36 80.6
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 2.5e-09 65.1 39 76.9
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 2.5e-09 65.1 36 75.0
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 2.5e-09 65.1 30 86.7
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 2.5e-09 65.1 30 86.7
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 3.3e-09 64.7 36 75.0
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 3.3e-09 64.7 36 77.8
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 3.3e-09 64.7 36 75.0
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 4.3e-09 64.3 39 69.2
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 4.3e-09 64.3 36 75.0
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 5.6e-09 63.9 36 72.2
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 5.6e-09 63.9 34 73.5
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 7.3e-09 63.5 36 75.0
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 7.3e-09 63.5 35 77.1
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 7.3e-09 63.5 36 75.0
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 7.3e-09 63.5 37 78.4
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 9.5e-09 63.2 35 74.3
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 9.5e-09 63.2 35 74.3
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 9.5e-09 63.2 36 69.4
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 1.6e-08 62.4 36 77.8
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 2.1e-08 62.0 36 72.2
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 2.8e-08 61.6 36 72.2
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 2.8e-08 61.6 36 72.2
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 2.8e-08 61.6 39 69.2
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 2.8e-08 61.6 36 72.2
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 2.8e-08 61.6 36 69.4
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 2.8e-08 61.6 53 52.8
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.6e-08 61.2 34 79.4
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.6e-08 61.2 34 79.4
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 3.6e-08 61.2 36 69.4
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 4.7e-08 60.8 32 78.1
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 4.7e-08 60.8 34 70.6
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 4.7e-08 60.8 36 69.4
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 8.1e-08 60.1 36 66.7
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 8.1e-08 60.1 48 52.1
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 1.4e-07 59.3 36 66.7
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 1.8e-07 58.9 31 71.0
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 1.8e-07 58.9 31 71.0
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 5.2e-07 57.4 33 63.6
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 5.2e-07 57.4 36 72.2
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 5.2e-07 57.4 35 71.4
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 1.2e-06 56.2 33 63.6
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.5e-06 55.8 35 62.9
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.5e-06 55.8 35 62.9
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 2.0e-06 55.5 31 64.5
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 2.0e-06 55.5 31 64.5
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 2.0e-06 55.5 31 64.5
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 2.0e-06 55.5 31 64.5
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 2.0e-06 55.5 31 64.5
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 2.0e-06 55.5 31 64.5
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 2.0e-06 55.5 31 64.5
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 2.0e-06 55.5 31 64.5
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 3.4e-06 54.7 36 69.4
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 4.4e-06 54.3 36 63.9
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 9.9e-06 53.1 33 60.6
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 9.9e-06 53.1 33 60.6
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 9.9e-06 53.1 35 65.7


User provided reference genes

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