Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017647 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.4e-96 356.3 443 100.0
AUR62000649 Chenopodium quinoa HOM05D000162 ORTHO05D003288 6.7e-52 209.1 404 91.8
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.1e-51 208.4 397 92.7
AUR62005303 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.4e-51 205.7 402 74.9
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 3.7e-50 203.4 441 85.3
AUR62005276 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.4e-49 200.7 403 76.7
AUR62000691 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.1e-49 200.3 406 81.3
AUR62005214 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.3e-49 199.5 403 91.1
AUR62000650 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.5e-48 196.4 117 83.8
AUR62000666 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.9e-48 196.1 111 84.7
AUR62000710 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.0e-47 195.3 115 81.7
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.3e-47 194.9 114 83.3
AUR62005306 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.2e-47 194.1 120 80.8
AUR62000665 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.9e-47 193.7 117 82.1
AUR62005167 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.7e-45 187.2 403 90.1
AUR62005260 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.7e-45 186.4 112 79.5
AUR62000690 Chenopodium quinoa HOM05D000162 ORTHO05D003288 8.0e-45 185.7 393 82.4
AUR62000680 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.4e-43 179.9 119 74.8
AUR62005305 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.3e-42 178.3 403 89.6
AUR62007002 Chenopodium quinoa HOM05D000162 ORTHO05D000090 9.1e-41 172.2 403 88.8
AUR62005308 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.6e-37 161.4 120 70.0
AUR62005251 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.0e-35 154.5 116 68.1
AUR62005284 Chenopodium quinoa HOM05D000162 ORTHO05D000090 5.7e-35 152.9 89 83.1
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 1.2e-27 128.6 105 60.0
AUR62004849 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.2e-26 124.4 399 84.2
AUR62005290 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.7e-23 114.8 71 76.1
AUR62005307 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.9e-23 114.0 59 91.5
AUR62005267 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.3e-22 110.5 59 89.8
AUR62040933 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.2e-21 108.6 63 81.0
AUR62000700 Chenopodium quinoa HOM05D000162 ORTHO05D003288 8.0e-21 105.9 84 65.5
AUR62040932 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.2e-19 102.1 59 84.7
AUR62000711 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.7e-19 99.8 114 49.1
AUR62000760 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.9e-18 97.4 55 85.5
AUR62000669 Chenopodium quinoa HOM05D000162 ORTHO05D003288 8.3e-18 95.9 56 80.4
AUR62000692 Chenopodium quinoa HOM05D000691 ORTHO05D000378 1.4e-17 95.1 54 83.3
Ah.06g190010 Amaranthus hybridus HOM05D000162 ORTHO05D000090 4.1e-17 93.6 68 67.6
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 5.4e-17 93.2 58 74.1
AUR62000679 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.0e-17 92.8 52 88.5
EL10Ac4g09784 Beta vulgaris HOM05D000162 ORTHO05D000090 2.7e-16 90.9 55 74.5
AUR62006756 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.6e-16 90.1 62 67.7
EL10Ac4g09725 Beta vulgaris HOM05D000162 ORTHO05D000090 5.9e-16 89.7 58 69.0
EL10Ac4g09728 Beta vulgaris HOM05D000162 ORTHO05D000090 5.9e-16 89.7 59 67.8
AUR62006791 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.8e-16 89.4 62 66.1
EL10Ac4g09525 Beta vulgaris HOM05D000162 ORTHO05D000090 3.0e-15 87.4 100 42.0
EL10Ac4g09526 Beta vulgaris HOM05D000162 ORTHO05D003288 3.0e-15 87.4 100 42.0
AUR62000377 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.0e-15 87.4 62 66.1
EL10Ac4g09782 Beta vulgaris HOM05D000162 ORTHO05D000090 5.0e-15 86.7 58 65.5
AUR62006790 Chenopodium quinoa HOM05D000162 ORTHO05D000090 5.0e-15 86.7 58 65.5
Ah.13g076900 Amaranthus hybridus HOM05D000162 ORTHO05D000090 1.1e-14 85.5 57 66.7
AUR62000390 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.1e-14 85.5 62 64.5
AUR62000462 Chenopodium quinoa HOM05D000162 ORTHO05D010954 1.1e-14 85.5 62 64.5
EL10Ac4g09780 Beta vulgaris HOM05D000162 ORTHO05D000090 1.9e-14 84.7 56 66.1
Hund21891 Selenicereus undatus HOM05D008994 ORTHO05D010954 1.9e-14 84.7 61 65.6
EL10Ac4g09599 Beta vulgaris HOM05D000162 ORTHO05D000090 4.3e-14 83.6 56 67.9
EL10Ac4g09814 Beta vulgaris HOM05D000162 ORTHO05D000090 4.3e-14 83.6 82 51.2
AUR62006890 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.3e-14 83.6 92 43.5
AUR62006962 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.3e-14 83.6 60 65.0
AUR62000443 Chenopodium quinoa HOM05D000162 ORTHO05D000090 7.3e-14 82.8 58 65.5
AUR62000667 Chenopodium quinoa HOM05D000162 ORTHO05D000090 9.5e-14 82.4 43 88.4
Hund21894 Selenicereus undatus HOM05D000162 ORTHO05D000090 1.2e-13 82.0 63 60.3
AUR62000456 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.6e-13 80.5 58 65.5
AUR62000699 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.7e-13 80.1 44 86.4
Hund21880 Selenicereus undatus HOM05D000162 ORTHO05D000090 4.7e-13 80.1 63 58.7
AUR62000844 Chenopodium quinoa HOM05D000162 ORTHO05D003288 8.0e-13 79.3 118 36.4
AUR62000391 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.0e-12 79.0 59 62.7
Hund27505 Selenicereus undatus HOM05D021897 ORTHO05D010954 1.0e-12 79.0 63 60.3
AUR62000354 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.4e-12 78.6 92 43.5
EL10Ac4g09836 Beta vulgaris HOM05D000162 ORTHO05D003288 3.1e-12 77.4 97 46.4
AUR62000458 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.5e-11 75.1 58 60.3
EL10Ac4g09485 Beta vulgaris HOM05D000162 ORTHO05D000090 4.4e-11 73.6 49 73.5
AUR62000614 Chenopodium quinoa HOM05D000162 ORTHO05D000090 5.8e-11 73.2 110 38.2
QL03p008266 Quercus lobata HOM05D000162 ORTHO05D000090 5.8e-11 73.2 62 56.5
QL05p070010 Quercus lobata HOM05D000162 ORTHO05D000090 5.8e-11 73.2 62 56.5
AUR62000489 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.3e-10 72.0 54 63.0
AUR62005291 Chenopodium quinoa HOM05D000162 ORTHO05D011797 1.3e-10 72.0 63 58.7
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 1.7e-10 71.6 80 41.2
AUR62005302 Chenopodium quinoa HOM05D000162 ORTHO05D000090 2.2e-10 71.2 59 59.3
AUR62005301 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.7e-10 70.5 58 58.6
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 4.9e-10 70.1 94 42.6
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 6.4e-10 69.7 111 34.2
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 8.3e-10 69.3 112 33.9
ECA240G3448 Erigeron canadensis HOM05D000162 ORTHO05D000090 1.1e-09 68.9 57 57.9
AUR62000712 Chenopodium quinoa HOM05D000162 ORTHO05D000090 1.9e-09 68.2 55 63.6
MBI11_g20198_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 2.4e-09 67.8 63 54.0
arahy.Tifrunner.gnm1.ann1.M2HM0V Arachis hypogaea HOM05D018308 ORTHO05D003288 4.1e-09 67.0 128 31.2
AUR62000447 Chenopodium quinoa HOM05D000162 ORTHO05D000090 5.4e-09 66.6 48 64.6
AUR62000309 Chenopodium quinoa HOM05D006174 ORTHO05D007987 9.2e-09 65.9 42 69.0
Glyma.07G102000 Glycine max HOM05D010072 ORTHO05D011797 9.2e-09 65.9 63 47.6
RcHm_v2.0_Chr5g0074181 Rosa chinensis HOM05D009709 ORTHO05D003288 1.6e-08 65.1 89 37.1
Sabra02G0034700 Salix brachista HOM05D017826 ORTHO05D003288 1.6e-08 65.1 102 31.4
arahy.Tifrunner.gnm1.ann1.KQ42YR Arachis hypogaea HOM05D018308 ORTHO05D003288 2.0e-08 64.7 101 35.6
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 2.0e-08 64.7 92 32.6
Cc07_g18990 Coffea canephora HOM05D000162 ORTHO05D000090 2.0e-08 64.7 60 53.3
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 2.0e-08 64.7 88 37.5
SEGI_04314 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 2.0e-08 64.7 80 37.5
vmacro13801 Vaccinium macrocarpon HOM05D026694 ORTHO05D003288 3.5e-08 63.9 75 44.0
EL10Ac4g09408 Beta vulgaris HOM05D000162 ORTHO05D000090 4.6e-08 63.5 70 45.7
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 4.6e-08 63.5 94 38.3
AUR62000652 Chenopodium quinoa HOM05D000162 ORTHO05D000090 6.0e-08 63.2 52 59.6
arahy.Tifrunner.gnm1.ann1.U8UX16 Arachis hypogaea HOM05D000239 ORTHO05D009715 1.0e-07 62.4 82 41.5
Nitab4.5_0000956g0130 Nicotiana tabacum HOM05D011051 ORTHO05D003288 1.7e-07 61.6 84 36.9
EL10Ac4g09824 Beta vulgaris HOM05D000162 ORTHO05D000090 2.3e-07 61.2 62 48.4
AUR62000378 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.0e-07 60.8 78 38.5
AUR62000578 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.0e-07 60.8 42 66.7
RcHm_v2.0_Chr6g0265911 Rosa chinensis HOM05D010115 ORTHO05D000090 3.0e-07 60.8 49 57.1
Gorai.011G151100 Gossypium raimondii HOM05D000162 ORTHO05D003288 3.9e-07 60.5 60 45.0
arahy.Tifrunner.gnm1.ann1.90GDKS Arachis hypogaea HOM05D008100 ORTHO05D009715 5.0e-07 60.1 63 46.0
EL10Ac4g09683 Beta vulgaris HOM05D000162 ORTHO05D000090 5.0e-07 60.1 59 49.2
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 5.0e-07 60.1 85 34.1
Gorai.009G378000 Gossypium raimondii HOM05D009709 ORTHO05D003288 5.0e-07 60.1 75 38.7
HanXRQChr07g0205001 Helianthus annuus HOM05D000162 ORTHO05D000090 5.0e-07 60.1 111 33.3
MD11G1128300 Malus domestica HOM05D014620 ORTHO05D016319 5.0e-07 60.1 52 51.9
Prupe.6G093300 Prunus persica HOM05D000162 ORTHO05D000090 5.0e-07 60.1 60 48.3
RcHm_v2.0_Chr6g0265891 Rosa chinensis HOM05D010115 ORTHO05D000090 6.6e-07 59.7 49 55.1
AUR62000379 Chenopodium quinoa HOM05D000162 ORTHO05D000090 8.6e-07 59.3 42 64.3
AUR62006759 Chenopodium quinoa HOM05D000162 ORTHO05D000090 8.6e-07 59.3 57 47.4
MD04G1014400 Malus domestica HOM05D037646 ORTHO05D036303 8.6e-07 59.3 62 45.2
Nitab4.5_0000428g0460 Nicotiana tabacum HOM05D011051 ORTHO05D003288 8.6e-07 59.3 67 38.8
RcHm_v2.0_Chr5g0078541 Rosa chinensis HOM05D009346 ORTHO05D012019 8.6e-07 59.3 64 48.4
TPR.G9763 Trifolium pratense HOM05D008100 ORTHO05D009715 8.6e-07 59.3 82 35.4
MD04G1014300 Malus domestica HOM05D000162 ORTHO05D000090 1.1e-06 58.9 62 45.2
Potri.005G046050 Populus trichocarpa HOM05D009709 ORTHO05D003288 1.1e-06 58.9 80 36.2
EL10Ac4g09837 Beta vulgaris HOM05D000162 ORTHO05D000090 1.5e-06 58.5 43 69.8
ECA238G3298 Erigeron canadensis HOM05D000162 ORTHO05D000090 1.5e-06 58.5 57 50.9
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 1.5e-06 58.5 74 43.2
Medtr1g091880 Medicago truncatula HOM05D008100 ORTHO05D009715 1.9e-06 58.2 81 37.0
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 1.9e-06 58.2 83 36.1
AUR62000709 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.5e-06 57.8 50 58.0
Nitab4.5_0006390g0090 Nicotiana tabacum HOM05D011051 ORTHO05D003288 2.5e-06 57.8 48 47.9
EL10Ac4g09649 Beta vulgaris HOM05D000140 ORTHO05D000087 3.3e-06 57.4 43 58.1
CSS0026088 Camellia sinensis var. sinensis HOM05D009709 ORTHO05D003288 3.3e-06 57.4 68 41.2
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 3.3e-06 57.4 88 36.4
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 3.3e-06 57.4 88 36.4
AUR62006802 Chenopodium quinoa HOM05D000162 ORTHO05D000090 4.3e-06 57.0 42 64.3
MD11G1117500 Malus domestica HOM05D010115 ORTHO05D014601 4.3e-06 57.0 55 47.3
Medtr6g079260 Medicago truncatula HOM05D008100 ORTHO05D009715 4.3e-06 57.0 64 42.2
Medtr7g026120 Medicago truncatula HOM05D014016 ORTHO05D009715 4.3e-06 57.0 67 47.8
RcHm_v2.0_Chr5g0076121 Rosa chinensis HOM05D010115 ORTHO05D014601 4.3e-06 57.0 54 53.7
TAR628G1172 Trochodendron aralioides HOM05D006858 ORTHO05D008767 4.3e-06 57.0 92 28.3
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 5.6e-06 56.6 59 49.2
FAN11G2498 Fragaria x ananassa HOM05D000044 ORTHO05D000090 5.6e-06 56.6 64 48.4
Lj2g0025112 Lotus japonicus HOM05D000162 ORTHO05D000090 5.6e-06 56.6 50 52.0
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 7.3e-06 56.2 94 26.6
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 7.3e-06 56.2 94 26.6
QL03p013262 Quercus lobata HOM05D000162 ORTHO05D000090 7.3e-06 56.2 79 34.2
RcHm_v2.0_Chr5g0069221 Rosa chinensis HOM05D010115 ORTHO05D014601 7.3e-06 56.2 49 55.1
Thecc.04G198900 Theobroma cacao HOM05D013428 ORTHO05D036303 7.3e-06 56.2 57 47.4
EL10Ac4g09726 Beta vulgaris HOM05D000162 ORTHO05D000090 9.5e-06 55.8 59 44.1
AUR62006654 Chenopodium quinoa HOM05D002099 ORTHO05D002080 9.5e-06 55.8 41 63.4


User provided reference genes

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