Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017604 Chenopodium quinoa HOM05D003750 ORTHO05D004337 2.3e-93 346.3 284 100.0
AUR62015148 Chenopodium quinoa HOM05D003750 ORTHO05D004337 2.5e-52 209.9 168 92.9
EL10Ac9g22858 Beta vulgaris HOM05D003750 ORTHO05D004337 5.5e-39 165.6 88 88.6
Ah.01g013400 Amaranthus hybridus HOM05D003750 ORTHO05D004337 4.8e-35 152.5 167 70.7
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 3.8e-32 142.9 91 73.6
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 2.7e-30 136.7 92 71.7
Potri.002G060800 Populus trichocarpa HOM05D003750 ORTHO05D004337 6.9e-26 122.1 153 44.4
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 4.5e-25 119.4 90 58.9
Actinidia11198 Actinidia chinensis HOM05D003750 ORTHO05D004337 5.9e-25 119.0 90 56.7
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.0e-24 118.2 90 60.0
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.0e-24 118.2 90 60.0
QL08p043924 Quercus lobata HOM05D003750 ORTHO05D004337 1.0e-24 118.2 90 56.7
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 1.3e-24 117.9 91 61.5
Sabra02G0049300 Salix brachista HOM05D003750 ORTHO05D004337 1.3e-24 117.9 90 57.8
Haze_13489 Corylus avellana HOM05D003750 ORTHO05D004337 1.7e-24 117.5 90 56.7
Ciclev10032169m.g Citrus clementina HOM05D003750 ORTHO05D004337 2.2e-24 117.1 90 60.0
Rhsim06G0118400 Rhododendron simsii HOM05D003750 ORTHO05D004337 2.2e-24 117.1 90 56.7
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 2.9e-24 116.7 90 57.8
Glyma.14G027551 Glycine max HOM05D003750 ORTHO05D004337 3.8e-24 116.3 90 55.6
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 5.0e-24 115.9 91 60.4
Potri.005G200900 Populus trichocarpa HOM05D003750 ORTHO05D004337 6.5e-24 115.5 159 43.4
arahy.Tifrunner.gnm1.ann1.Y7JGW6 Arachis hypogaea HOM05D003750 ORTHO05D004337 8.5e-24 115.2 90 55.6
Gohir.A05G378400 Gossypium hirsutum HOM05D003750 ORTHO05D004337 8.5e-24 115.2 89 58.4
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 1.1e-23 114.8 90 56.7
Cfa022914 Carpinus fangiana HOM05D003750 ORTHO05D004337 1.4e-23 114.4 90 54.4
Duzib264G0293 Durio zibethinus HOM05D003750 ORTHO05D004337 1.4e-23 114.4 89 58.4
Gohir.D04G037100 Gossypium hirsutum HOM05D003750 ORTHO05D004337 1.4e-23 114.4 89 58.4
Phvul.006G033900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.4e-23 114.4 90 55.6
Phvul.008G190900 Phaseolus vulgaris HOM05D003750 ORTHO05D004337 1.4e-23 114.4 90 55.6
Sabra05G0152900 Salix brachista HOM05D003750 ORTHO05D004337 1.4e-23 114.4 90 54.4
Thecc.01G160900 Theobroma cacao HOM05D003750 ORTHO05D004337 1.4e-23 114.4 89 56.2
VMungo0647G1422 Vigna mungo HOM05D003750 ORTHO05D004337 1.4e-23 114.4 90 55.6
arahy.Tifrunner.gnm1.ann1.UWZ29M Arachis hypogaea HOM05D003750 ORTHO05D004337 1.9e-23 114.0 90 54.4
Glyma.02G287400 Glycine max HOM05D003750 ORTHO05D004337 1.9e-23 114.0 89 55.1
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.9e-23 114.0 90 56.7
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 1.9e-23 114.0 90 57.8
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 2.5e-23 113.6 90 57.8
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 3.2e-23 113.2 90 57.8
CSS0030446 Camellia sinensis var. sinensis HOM05D003750 ORTHO05D004337 4.2e-23 112.8 90 56.7
Gorai.012G041900 Gossypium raimondii HOM05D003750 ORTHO05D004337 4.2e-23 112.8 89 57.3
Duzib187G0136 Durio zibethinus HOM05D003750 ORTHO05D004337 5.5e-23 112.5 89 57.3
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 7.2e-23 112.1 91 60.4
VMungo0540G2251 Vigna mungo HOM05D003750 ORTHO05D004337 7.2e-23 112.1 90 54.4
arahy.Tifrunner.gnm1.ann1.ZP8MLZ Arachis hypogaea HOM05D003750 ORTHO05D004337 1.2e-22 111.3 88 55.7
COL.COLO4_33737 Corchorus olitorius HOM05D003750 ORTHO05D004337 1.2e-22 111.3 90 54.4
Medtr3g089570 Medicago truncatula HOM05D003750 ORTHO05D004337 1.2e-22 111.3 90 54.4
Oeu040027.1 Olea europaea HOM05D003750 ORTHO05D004337 1.2e-22 111.3 90 56.7
CANSAT64G2056 Cannabis sativa HOM05D003750 ORTHO05D004337 1.6e-22 110.9 90 52.2
CAN.G164.22 Capsicum annuum HOM05D003750 ORTHO05D004337 1.6e-22 110.9 90 54.4
Glyma.08G309700 Glycine max HOM05D003750 ORTHO05D004337 1.6e-22 110.9 92 56.5
Glyma.18G106400 Glycine max HOM05D003750 ORTHO05D004337 1.6e-22 110.9 92 56.5
Lj6g0002200 Lotus japonicus HOM05D003750 ORTHO05D004337 1.6e-22 110.9 90 52.2
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 1.6e-22 110.9 90 57.8
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 2.1e-22 110.5 90 55.6
CsaV3_6G038000 Cucumis sativus L. HOM05D003750 ORTHO05D004337 2.7e-22 110.2 90 51.1
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 2.7e-22 110.2 90 54.4
Psat0s4925g0080 Pisum sativum HOM05D003750 ORTHO05D004337 2.7e-22 110.2 90 54.4
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.7e-22 110.2 89 56.2
Dinv12695 Davidia involucrata HOM05D003750 ORTHO05D004337 3.6e-22 109.8 88 55.7
LjContig00310g0001182 Lotus japonicus HOM05D003750 ORTHO05D004337 3.6e-22 109.8 90 51.1
Lalb_Chr10g0106741 Lupinus albus HOM05D003750 ORTHO05D004337 3.6e-22 109.8 90 53.3
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 3.6e-22 109.8 91 53.8
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 3.6e-22 109.8 90 56.7
arahy.Tifrunner.gnm1.ann1.N94NTJ Arachis hypogaea HOM05D003750 ORTHO05D004337 4.6e-22 109.4 165 47.9
ClCG09G022350 Citrullus lanatus HOM05D003750 ORTHO05D004337 4.6e-22 109.4 90 51.1
Duzib147G0801 Durio zibethinus HOM05D003750 ORTHO05D004337 4.6e-22 109.4 89 56.2
Lalb_Chr04g0248731 Lupinus albus HOM05D003750 ORTHO05D004337 4.6e-22 109.4 90 53.3
MD17G1140600 Malus domestica HOM05D003750 ORTHO05D004337 4.6e-22 109.4 91 54.9
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 4.6e-22 109.4 91 57.1
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 4.6e-22 109.4 90 52.2
TWI14G1010 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 4.6e-22 109.4 90 52.2
Atru.chr6.1510 Acer truncatum HOM05D003750 ORTHO05D004337 6.1e-22 109.0 89 52.8
CiPaw.03G189300 Carya illinoinensis HOM05D003750 ORTHO05D004337 6.1e-22 109.0 166 45.2
MELO3C014462.2 Cucumis melo HOM05D003750 ORTHO05D004337 6.1e-22 109.0 90 50.0
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 6.1e-22 109.0 91 54.9
Eucgr.K01198 Eucalyptus grandis HOM05D003750 ORTHO05D004337 7.9e-22 108.6 89 53.9
FvH4_6g38100 Fragaria vesca HOM05D003750 ORTHO05D004337 7.9e-22 108.6 91 54.9
FAN05G3098 Fragaria x ananassa HOM05D003750 ORTHO05D004337 7.9e-22 108.6 91 54.9
FAN14G5523 Fragaria x ananassa HOM05D003750 ORTHO05D004337 7.9e-22 108.6 91 54.9
Lsat_1_v5_gn_3_35901 Lactuca sativa HOM05D003750 ORTHO05D004337 7.9e-22 108.6 91 56.0
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 7.9e-22 108.6 89 56.2
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.0e-21 108.2 90 52.2
Lalb_Chr17g0348311 Lupinus albus HOM05D003750 ORTHO05D004337 1.0e-21 108.2 90 51.1
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 1.0e-21 108.2 90 55.6
Prupe.3G171000 Prunus persica HOM05D003750 ORTHO05D004337 1.4e-21 107.8 91 54.9
TPR.G12519 Trifolium pratense HOM05D003750 ORTHO05D004337 1.8e-21 107.5 90 51.1
Cpa.g.sc50.77 Carica papaya HOM05D003750 ORTHO05D004337 2.3e-21 107.1 90 51.1
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 2.3e-21 107.1 179 37.4
Nitab4.5_0000446g0080 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.3e-21 107.1 90 54.4
Nitab4.5_0006934g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.3e-21 107.1 90 53.3
FAN02G2641 Fragaria x ananassa HOM05D003750 ORTHO05D004337 3.0e-21 106.7 91 53.8
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 3.0e-21 106.7 88 55.7
AT2G42840 Arabidopsis thaliana HOM05D003750 ORTHO05D004337 3.9e-21 106.3 171 42.7
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 3.9e-21 106.3 161 40.4
Ca_27365_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 6.7e-21 105.5 91 52.7
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 6.7e-21 105.5 90 53.3
CAN.G1191.4 Capsicum annuum HOM05D003750 ORTHO05D004337 8.8e-21 105.1 88 55.7
Migut.M00516 Erythranthe guttata HOM05D003750 ORTHO05D004337 1.5e-20 104.4 92 56.5
RcHm_v2.0_Chr2g0151161 Rosa chinensis HOM05D003750 ORTHO05D004337 1.5e-20 104.4 91 53.8
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.5e-20 104.4 88 54.5
Psat2g014640 Pisum sativum HOM05D003750 ORTHO05D004337 2.6e-20 103.6 161 42.9
Lalb_Chr19g0137861 Lupinus albus HOM05D003750 ORTHO05D004337 3.3e-20 103.2 90 52.2
vmacro12451 Vaccinium macrocarpon HOM05D003750 ORTHO05D004337 3.3e-20 103.2 174 40.2
MD09G1154000 Malus domestica HOM05D003750 ORTHO05D004337 4.3e-20 102.8 91 52.7
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 4.3e-20 102.8 88 53.4
TWI59G1023 Tripterygium wilfordii HOM05D003750 ORTHO05D004337 4.3e-20 102.8 90 50.0
Lalb_Chr20g0108881 Lupinus albus HOM05D003750 ORTHO05D004337 5.7e-20 102.4 90 52.2
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 5.7e-20 102.4 88 53.4
TPR.G16759 Trifolium pratense HOM05D003750 ORTHO05D004337 5.7e-20 102.4 88 53.4
BcaNung06740 Brassica carinata HOM05D003750 ORTHO05D004337 7.4e-20 102.1 94 52.1
A05p03190 Brassica napus HOM05D003750 ORTHO05D004337 7.4e-20 102.1 94 52.1
C04p03840 Brassica napus HOM05D003750 ORTHO05D004337 7.4e-20 102.1 94 52.1
BolC4t22020H Brassica oleracea HOM05D003750 ORTHO05D004337 7.4e-20 102.1 94 52.1
BraA05t19309Z Brassica rapa HOM05D003750 ORTHO05D004337 7.4e-20 102.1 94 52.1
Aa31LG1G24600 Aethionema arabicum HOM05D003750 ORTHO05D004337 9.7e-20 101.7 94 53.2
Carub.0004s2528 Capsella rubella HOM05D003750 ORTHO05D004337 9.7e-20 101.7 163 42.3
Lsat_1_v5_gn_4_26620 Lactuca sativa HOM05D003750 ORTHO05D004337 9.7e-20 101.7 91 54.9
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 9.7e-20 101.7 91 52.7
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 1.3e-19 101.3 90 48.9
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 1.7e-19 100.9 90 51.1
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 1.7e-19 100.9 90 50.0
BcaC02g07218 Brassica carinata HOM05D003750 ORTHO05D004337 2.2e-19 100.5 94 51.1
A04p32410 Brassica napus HOM05D003750 ORTHO05D004337 2.2e-19 100.5 94 51.1
C04p69930 Brassica napus HOM05D003750 ORTHO05D004337 2.2e-19 100.5 94 51.1
BolC4t28493H Brassica oleracea HOM05D003750 ORTHO05D004337 2.2e-19 100.5 94 51.1
BraA04t18694Z Brassica rapa HOM05D003750 ORTHO05D004337 2.2e-19 100.5 94 51.1
BcaB06g29267 Brassica carinata HOM05D003750 ORTHO05D004337 2.8e-19 100.1 94 51.1
CARHR137920 Cardamine hirsuta HOM05D003750 ORTHO05D004337 2.8e-19 100.1 94 51.1
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 3.7e-19 99.8 96 50.0
Thhalv10016927m.g Eutrema salsugineum HOM05D003750 ORTHO05D004337 4.8e-19 99.4 165 44.2
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 8.2e-19 98.6 91 51.6
ATR0737G120 Amborella trichopoda HOM05D003750 ORTHO05D004337 1.1e-18 98.2 91 53.8
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 1.1e-18 98.2 91 45.1
Aqoxy4G00176 Aquilegia oxysepala HOM05D003750 ORTHO05D004337 1.4e-18 97.8 95 50.5
AL4G41450 Arabidopsis lyrata HOM05D003750 ORTHO05D004337 1.4e-18 97.8 164 47.0
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 1.4e-18 97.8 91 44.0
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.8e-18 97.4 89 50.6
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 3.1e-18 96.7 90 46.7
unitig_899.g15337 Utricularia gibba HOM05D003750 ORTHO05D004337 6.9e-18 95.5 173 37.0
CDE09G1130 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 2.0e-17 94.0 86 50.0
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 2.0e-17 94.0 88 52.3
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 2.0e-17 94.0 91 46.2
unitig_85.g27387 Utricularia gibba HOM05D003750 ORTHO05D004337 2.6e-17 93.6 88 47.7
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 3.4e-17 93.2 172 44.2
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 4.5e-17 92.8 90 47.8
MBI07_g30204_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 5.9e-17 92.4 85 54.1
Sp4g24960 Schrenkiella parvula HOM05D003750 ORTHO05D004337 1.7e-16 90.9 171 43.3
ECA234G0795 Erigeron canadensis HOM05D001021 ORTHO05D000894 2.9e-16 90.1 92 46.7
DCAR_009794 Daucus carota HOM05D003750 ORTHO05D004337 3.8e-16 89.7 94 48.9
AUR62020904 Chenopodium quinoa HOM05D000194 ORTHO05D000069 6.5e-16 89.0 44 97.7
DCAR_021309 Daucus carota HOM05D003750 ORTHO05D004337 6.5e-16 89.0 95 48.4
DCAR_016898 Daucus carota HOM05D003750 ORTHO05D004337 1.4e-15 87.8 95 49.5
SalBow7G0202 Salvia bowleyana HOM05D003750 ORTHO05D004337 1.9e-15 87.4 102 46.1
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 2.5e-15 87.0 91 46.2
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 5.5e-15 85.9 88 46.6
Zm00001eb154370 Zea mays HOM05D003750 ORTHO05D004337 9.4e-15 85.1 89 46.1
Ca_06287_v3 Cicer arietinum L. HOM05D003750 ORTHO05D004337 1.2e-14 84.7 74 54.1
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 1.2e-14 84.7 90 45.6
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 1.6e-14 84.3 90 45.6
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 1.6e-14 84.3 90 45.6
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 1.6e-14 84.3 90 45.6
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 7.9e-14 82.0 164 36.0
CDE02G2915 Ceratophyllum demersum HOM05D003750 ORTHO05D004337 3.0e-13 80.1 90 42.2
AUR62008676 Chenopodium quinoa HOM05D002565 ORTHO05D002771 3.0e-13 80.1 43 93.0
Glyma.02G280550 Glycine max HOM05D003750 ORTHO05D004337 3.0e-13 80.1 88 48.9
PSO675G0845 Papaver somniferum HOM05D003750 ORTHO05D004337 5.2e-13 79.3 96 41.7
PSO541G0678 Papaver somniferum HOM05D003750 ORTHO05D004337 8.8e-13 78.6 96 41.7
Eucgr.A01963 Eucalyptus grandis HOM05D003750 ORTHO05D004337 2.0e-12 77.4 92 44.6
HanXRQChr01g0028591 Helianthus annuus HOM05D003750 ORTHO05D004337 7.4e-12 75.5 89 49.4
SEGI_25228 Sequoiadendron giganteum HOM05D003750 ORTHO05D004337 2.8e-11 73.6 92 43.5
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 6.3e-11 72.4 90 42.2
Zm00001eb384740 Zea mays HOM05D003750 ORTHO05D004337 1.3e-08 64.7 89 41.6
Zm00001eb277660 Zea mays HOM05D003750 ORTHO05D004337 5.5e-07 59.3 93 39.8
TPR.G40574 Trifolium pratense HOM05D003750 ORTHO05D004337 2.1e-06 57.4 39 51.3
Os06g0553200 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 6.1e-06 55.8 93 38.7
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 8.0e-06 55.5 90 36.7


User provided reference genes

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