Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.0e-156 555.1 270 100.0
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.3e-135 485.7 310 79.0
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.2e-105 385.2 257 75.9
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 6.7e-103 377.9 302 63.2
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 6.5e-82 308.1 309 52.1
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.2e-80 303.9 308 52.9
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 6.1e-80 301.6 290 53.4
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 7.9e-80 301.2 308 50.3
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 3.9e-79 298.9 338 49.1
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.7e-77 292.4 314 48.1
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.8e-77 292.0 306 51.0
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 1.8e-76 290.0 306 50.3
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.5e-75 287.0 304 50.0
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 4.5e-75 285.4 297 48.5
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 7.7e-75 284.6 314 49.4
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 7.7e-75 284.6 296 53.4
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.7e-74 283.5 310 46.8
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.7e-74 283.5 311 46.9
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 1.7e-74 283.5 310 48.1
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 2.9e-74 282.7 311 46.3
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 2.9e-74 282.7 311 46.3
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 6.5e-74 281.6 310 46.8
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 6.5e-74 281.6 315 47.6
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 8.5e-74 281.2 310 46.5
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 8.5e-74 281.2 312 48.1
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.1e-73 280.8 297 50.2
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 3.2e-73 279.3 311 47.6
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 5.5e-73 278.5 308 46.1
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 7.2e-73 278.1 286 50.7
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 7.2e-73 278.1 238 58.0
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 1.2e-72 277.3 322 46.3
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 1.6e-72 276.9 312 45.8
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 2.1e-72 276.6 307 49.5
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 2.1e-72 276.6 309 47.2
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 2.7e-72 276.2 309 45.0
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 3.6e-72 275.8 308 48.4
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 4.7e-72 275.4 309 46.9
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 4.7e-72 275.4 311 46.6
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 6.1e-72 275.0 306 50.0
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 7.9e-72 274.6 283 50.2
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.4e-71 273.9 305 47.2
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.8e-71 273.5 310 46.8
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.8e-71 273.5 306 47.1
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 2.3e-71 273.1 296 49.7
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 5.1e-71 271.9 312 45.2
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 5.1e-71 271.9 308 47.7
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 6.7e-71 271.6 292 49.3
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 8.8e-71 271.2 318 47.5
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 2.6e-70 269.6 292 50.0
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 2.6e-70 269.6 292 50.0
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 3.3e-70 269.2 292 49.0
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.4e-70 268.9 301 49.8
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 4.4e-70 268.9 293 48.5
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 7.4e-70 268.1 315 45.1
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 7.4e-70 268.1 312 47.4
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 1.7e-69 266.9 307 44.6
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.7e-69 266.9 318 47.2
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.7e-69 266.9 337 44.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 2.2e-69 266.5 307 44.6
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.2e-69 266.5 301 49.5
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 2.8e-69 266.2 305 45.6
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 4.8e-69 265.4 308 44.5
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 6.3e-69 265.0 292 49.0
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 8.2e-69 264.6 287 48.8
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.1e-68 264.2 299 49.5
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-68 264.2 299 49.5
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.1e-68 264.2 295 47.8
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.1e-68 262.7 269 50.6
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 4.1e-68 262.3 299 47.5
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 7.0e-68 261.5 288 49.3
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.5e-67 260.4 262 51.1
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 2.0e-67 260.0 310 44.2
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.6e-67 259.6 295 49.8
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.5e-67 259.2 268 48.5
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 5.9e-67 258.5 292 48.6
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.3e-66 257.3 304 46.4
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 1.7e-66 256.9 304 45.4
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 3.8e-66 255.8 279 49.5
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.1e-65 254.2 283 47.0
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 4.2e-65 252.3 282 50.7
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 7.2e-65 251.5 280 49.3
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.2e-64 250.8 306 43.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 2.7e-64 249.6 310 45.5
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 8.0e-64 248.1 298 44.6
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 8.0e-64 248.1 298 44.6
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.0e-63 247.7 264 50.8
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.3e-63 246.5 271 51.7
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 5.2e-63 245.4 270 51.1
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 8.8e-63 244.6 361 40.4
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 5.7e-62 241.9 291 43.6
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 9.7e-62 241.1 303 43.6
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 4.8e-61 238.8 292 46.9
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.8e-60 236.9 278 43.5
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 9.1e-60 234.6 241 51.9
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 5.9e-59 231.9 266 48.9
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 5.9e-59 231.9 264 49.6
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.3e-58 230.7 194 58.2
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 5.0e-58 228.8 193 57.5
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 8.5e-58 228.0 271 45.4
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 1.9e-57 226.9 272 45.2
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.6e-56 223.8 287 44.3
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 8.0e-56 221.5 274 44.5
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 3.0e-55 219.5 298 44.6
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.3e-53 211.8 246 52.0
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.8e-52 210.3 228 48.2
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.1e-52 209.5 194 56.2
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 3.5e-51 206.1 265 45.3
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 1.1e-49 201.1 168 60.1
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 1.2e-48 197.6 308 39.9
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 5.2e-47 192.2 281 39.1
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 2.6e-46 189.9 230 45.7
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 4.4e-46 189.1 221 47.1
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 3.7e-45 186.0 224 46.0
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 5.4e-44 182.2 234 45.7
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.6e-43 180.6 323 34.1
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 1.7e-42 177.2 270 40.4
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 8.6e-42 174.9 139 55.4
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.0e-39 167.9 182 46.2
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 2.6e-38 163.3 210 45.7
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 3.4e-38 162.9 141 55.3
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 9.8e-38 161.4 319 30.7
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 2.4e-36 156.8 290 32.1
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 7.0e-36 155.2 191 46.6
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 8.6e-34 148.3 192 44.8
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.3e-33 146.4 276 33.3
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 4.3e-33 146.0 206 38.8
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.0e-31 141.4 270 33.3
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.9e-29 133.3 157 45.2
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.1e-28 129.4 107 59.8
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 2.5e-25 120.2 85 69.4
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 9.5e-25 118.2 88 65.9
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 1.2e-24 117.9 248 35.9
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.2e-24 117.9 170 38.2
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.1e-23 114.8 179 36.9
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 2.0e-22 110.5 175 38.9
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 4.7e-16 89.4 108 43.5
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 2.2e-13 80.5 58 69.0
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 2.2e-13 80.5 58 69.0
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.4e-12 77.8 58 62.1
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 7.1e-12 75.5 202 27.2
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 4.7e-08 62.8 83 43.4
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 8.1e-08 62.0 56 50.0
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 1.4e-07 61.2 181 27.1
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 3.1e-07 60.1 70 45.7
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 7.6e-06 55.5 68 44.1


User provided reference genes

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