Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.1e-174 618.2 1060 100.0
AUR62015034 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.5e-115 420.6 999 96.4
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 7.2e-44 183.7 202 51.0
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 6.3e-40 170.6 199 48.2
Hma1.2p1_0133F.1_g061410 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 6.3e-40 170.6 205 48.3
Hma1.2p1_1825F.1_g304380 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 6.3e-40 170.6 206 47.6
GSVIVG01030055001 Vitis vinifera HOM05D003210 ORTHO05D000001 5.9e-38 164.1 201 48.8
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 7.8e-38 163.7 201 46.8
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 2.3e-37 162.2 189 47.1
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 1.9e-36 159.1 199 46.2
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 7.3e-36 157.1 202 47.5
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 9.5e-36 156.8 195 48.2
Ah.15g091280 Amaranthus hybridus HOM05D003210 ORTHO05D000001 1.2e-35 156.4 112 63.4
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.2e-35 156.4 201 42.3
vmacro12101 Vaccinium macrocarpon HOM05D003210 ORTHO05D000001 1.6e-35 156.0 203 49.3
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 2.8e-35 155.2 201 44.3
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 6.1e-35 154.1 201 41.8
RcHm_v2.0_Chr2g0156641 Rosa chinensis HOM05D003210 ORTHO05D000001 8.0e-35 153.7 201 42.3
TWI18G1117 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 8.0e-35 153.7 160 46.9
Oeu040467.2 Olea europaea HOM05D003210 ORTHO05D000001 1.4e-34 152.9 200 48.0
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 2.3e-34 152.1 195 44.1
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 8.9e-34 150.2 205 43.9
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 8.9e-34 150.2 152 51.3
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 1.5e-33 149.4 202 45.0
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 2.6e-33 148.7 202 48.0
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 4.4e-33 147.9 135 57.0
Manes.12G061200 Manihot esculenta HOM05D003210 ORTHO05D000001 4.4e-33 147.9 180 45.0
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 9.8e-33 146.7 193 43.0
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 6.4e-32 144.1 147 50.3
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 6.4e-32 144.1 163 46.6
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 1.4e-31 142.9 133 56.4
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 4.1e-31 141.4 147 53.1
CAN.G1397.6 Capsicum annuum HOM05D003210 ORTHO05D000001 1.6e-30 139.4 173 45.7
Eucgr.K00651 Eucalyptus grandis HOM05D003210 ORTHO05D000001 2.0e-30 139.0 176 44.3
Sopen07g024250 Solanum pennellii HOM05D003210 ORTHO05D000001 5.9e-30 137.5 147 46.9
Nitab4.5_0011940g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.0e-29 136.7 185 41.6
SalBow7G0399 Salvia bowleyana HOM05D003210 ORTHO05D000001 2.3e-29 135.6 147 51.7
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 2.3e-29 135.6 193 45.1
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 3.0e-29 135.2 202 42.1
Solyc07g047820.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 3.0e-29 135.2 185 41.6
HanXRQChr03g0075201 Helianthus annuus HOM05D003210 ORTHO05D000001 1.5e-28 132.9 201 38.3
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 4.3e-28 131.3 187 42.8
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 1.6e-27 129.4 210 36.7
unitig_748.g8367 Utricularia gibba HOM05D003210 ORTHO05D000001 8.0e-27 127.1 197 38.1
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.5e-25 122.9 197 41.6
FAN02G2842 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.7e-24 119.4 118 47.5
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 2.2e-24 119.0 153 45.1
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 2.9e-24 118.6 153 45.8
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.7e-24 118.2 118 47.5
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 3.7e-24 118.2 145 42.1
FAN05G1838 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.9e-24 117.9 118 46.6
MBI19_g25583_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 4.1e-23 114.8 185 36.8
SEGI_31076 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 3.6e-19 101.7 160 37.5
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 8.1e-19 100.5 170 38.8
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 4.0e-18 98.2 149 36.9
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.6e-17 95.5 175 33.7
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 3.4e-17 95.1 191 30.4
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 9.2e-15 87.0 156 32.7
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 1.2e-14 86.7 167 31.7
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 1.2e-14 86.7 184 29.3
ATR0665G178 Amborella trichopoda HOM05D003210 ORTHO05D000001 2.7e-14 85.5 130 35.4
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 2.7e-14 85.5 155 32.3
COL.COLO4_08492 Corchorus olitorius HOM05D003210 ORTHO05D000001 3.5e-14 85.1 111 43.2
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 4.6e-14 84.7 175 34.9
Hma1.2p1_0133F.1_g061420 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 1.7e-13 82.8 84 50.0
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 1.7e-13 82.8 185 34.6
Nitab4.5_0000441g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.9e-13 81.6 78 47.4
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 3.9e-13 81.6 191 28.3
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 5.1e-13 81.3 193 29.0
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 5.1e-13 81.3 188 29.8
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 5.1e-13 81.3 191 29.3
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 5.1e-13 81.3 209 29.7
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 6.6e-13 80.9 84 45.2
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 6.6e-13 80.9 84 45.2
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 6.6e-13 80.9 205 30.7
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 6.6e-13 80.9 173 30.6
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 8.6e-13 80.5 173 30.6
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 1.5e-12 79.7 172 32.0
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 1.5e-12 79.7 184 33.2
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 1.9e-12 79.3 223 45.7
QL04p021900 Quercus lobata HOM05D003210 ORTHO05D000001 1.9e-12 79.3 84 46.4
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 1.9e-12 79.3 205 31.2
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 2.5e-12 79.0 207 31.4
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 3.3e-12 78.6 179 29.6
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 4.3e-12 78.2 173 29.5
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 5.6e-12 77.8 180 28.9
CDE02G4398 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 5.6e-12 77.8 177 29.4
Dinv33235 Davidia involucrata HOM05D003210 ORTHO05D000001 5.6e-12 77.8 79 50.6
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 5.6e-12 77.8 173 28.9
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 5.6e-12 77.8 157 30.6
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 5.6e-12 77.8 179 25.7
Rhsim13G0050100 Rhododendron simsii HOM05D008810 ORTHO05D010971 5.6e-12 77.8 154 33.1
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 7.3e-12 77.4 188 28.7
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.2e-11 76.6 188 28.2
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 1.6e-11 76.3 199 30.2
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 1.6e-11 76.3 161 30.4
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 2.8e-11 75.5 177 26.0
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.8e-11 75.5 206 30.6
vmacro02795 Vaccinium macrocarpon HOM05D008810 ORTHO05D010971 3.6e-11 75.1 149 33.6
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 6.2e-11 74.3 171 25.7
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 8.1e-11 73.9 154 31.8
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.4e-10 73.2 209 29.2
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.8e-10 72.8 191 28.3
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 2.3e-10 72.4 179 29.1
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 2.3e-10 72.4 156 30.1
Lj1P792T34 Lonicera japonica HOM05D003210 ORTHO05D000001 3.1e-10 72.0 109 47.7
MBI11_g07406_MAGBIO Magnolia biondii HOM05D008810 ORTHO05D010971 3.1e-10 72.0 157 29.3
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 4.0e-10 71.6 182 29.7
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 5.2e-10 71.2 153 28.8
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 5.2e-10 71.2 204 26.0
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 6.8e-10 70.9 188 29.8
Aa31LG1G16470 Aethionema arabicum HOM05D003210 ORTHO05D000001 8.9e-10 70.5 149 30.2
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 1.2e-09 70.1 176 46.6
PGSC0003DMG400006128 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.6e-09 68.9 76 48.7
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 3.4e-09 68.6 158 27.2
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 3.4e-09 68.6 161 28.0
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 4.4e-09 68.2 172 28.5
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 4.4e-09 68.2 154 29.9
AT1G77340 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 5.8e-09 67.8 132 29.5
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 7.6e-09 67.4 161 28.6
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 7.6e-09 67.4 173 26.0
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 1.7e-08 66.2 177 23.7
Lsat_1_v5_gn_9_17361 Lactuca sativa HOM05D008810 ORTHO05D010971 1.7e-08 66.2 154 30.5
Prupe.8G196100 Prunus persica HOM05D008810 ORTHO05D010971 1.7e-08 66.2 188 28.7
BraA01t04388Z Brassica rapa HOM05D008810 ORTHO05D010971 2.2e-08 65.9 150 31.3
Cc04_g11530 Coffea canephora HOM05D003210 ORTHO05D000001 2.2e-08 65.9 53 60.4
Thecc.01G216300 Theobroma cacao HOM05D008810 ORTHO05D010971 2.9e-08 65.5 143 30.8
Aqoxy2G03931 Aquilegia oxysepala HOM05D008810 ORTHO05D010971 4.9e-08 64.7 189 27.5
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 4.9e-08 64.7 186 28.0
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 4.9e-08 64.7 157 27.4
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 4.9e-08 64.7 156 26.9
Lsat_1_v5_gn_9_104601 Lactuca sativa HOM05D003210 ORTHO05D000001 6.4e-08 64.3 76 43.4
Aqoxy4G02220 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 8.4e-08 63.9 80 46.2
MSTRG.12764 Avicennia marina HOM05D008810 ORTHO05D010971 1.9e-07 62.8 152 32.2
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 3.2e-07 62.0 152 27.6
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 4.1e-07 61.6 178 25.3
Zm00001eb118600 Zea mays HOM05D003210 ORTHO05D000001 5.4e-07 61.2 171 26.9
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 7.1e-07 60.8 190 26.8
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 9.2e-07 60.5 178 25.3
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 9.2e-07 60.5 155 27.7
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 1.6e-06 59.7 213 23.0
Os06g0690900 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 2.7e-06 58.9 175 26.9
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 3.5e-06 58.5 173 26.6


User provided reference genes

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