Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.9e-170 602.4 305 100.0
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.1e-143 513.5 267 97.4
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 2.5e-138 495.7 307 84.4
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.8e-136 487.3 313 80.2
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.8e-136 487.3 313 80.2
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 1.5e-127 459.9 334 74.3
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.0e-123 447.2 267 82.8
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 3.8e-115 418.7 276 75.0
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 6.6e-115 417.9 266 77.8
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.5e-114 416.8 278 75.9
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 9.5e-114 414.1 276 75.7
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 2.1e-113 412.9 309 68.6
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.4e-112 410.2 266 74.4
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.4e-112 410.2 269 76.6
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 2.3e-112 409.5 274 73.0
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 2.3e-112 409.5 279 74.2
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 3.0e-112 409.1 281 71.2
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 5.2e-112 408.3 282 73.4
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 5.2e-112 408.3 266 75.2
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 6.8e-112 407.9 291 72.2
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-111 407.1 313 69.3
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 1.2e-111 407.1 313 69.3
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 1.5e-111 406.8 270 74.4
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 3.4e-111 405.6 269 75.8
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 3.4e-111 405.6 266 75.6
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 4.4e-111 405.2 280 74.3
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 7.5e-111 404.4 269 74.7
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 7.5e-111 404.4 270 74.1
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.2e-110 402.9 282 73.4
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 2.9e-110 402.5 270 75.2
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.9e-110 401.7 282 72.7
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.9e-110 401.7 282 73.0
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 8.3e-110 401.0 301 69.4
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 2.4e-109 399.4 292 69.9
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 3.2e-109 399.1 266 74.4
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 4.1e-109 398.7 262 73.7
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 7.0e-109 397.9 293 70.0
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 9.2e-109 397.5 278 72.3
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 2.0e-108 396.4 264 73.9
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 2.7e-108 396.0 258 76.4
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 4.6e-108 395.2 266 72.9
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 4.6e-108 395.2 277 71.5
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 4.6e-108 395.2 266 73.3
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 5.9e-108 394.8 307 67.8
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 7.8e-108 394.4 264 72.7
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 7.8e-108 394.4 305 67.2
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 1.0e-107 394.0 304 68.4
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 3.9e-107 392.1 309 65.7
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 3.9e-107 392.1 305 65.2
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 5.0e-107 391.7 266 71.4
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 5.0e-107 391.7 270 71.5
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.9e-106 389.8 285 68.8
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 3.3e-106 389.0 280 70.7
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 3.3e-106 389.0 284 71.5
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 3.3e-106 389.0 285 68.8
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 5.6e-106 388.3 304 67.1
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 7.3e-106 387.9 264 71.2
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.6e-105 386.7 267 71.9
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 2.8e-105 386.0 304 65.8
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 2.8e-105 386.0 290 67.9
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 4.7e-105 385.2 259 72.6
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 6.2e-105 384.8 266 71.8
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.4e-104 383.6 291 68.4
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-104 383.6 264 72.7
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 1.4e-104 383.6 295 66.8
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 1.4e-104 383.6 295 66.8
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 1.4e-104 383.6 270 69.3
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 1.8e-104 383.3 296 66.6
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 2.3e-104 382.9 276 69.2
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 4.0e-104 382.1 304 65.8
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 4.0e-104 382.1 269 71.7
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 5.2e-104 381.7 305 66.9
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 1.2e-103 380.6 295 66.1
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 2.6e-103 379.4 266 71.1
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.4e-103 379.0 293 65.9
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 3.4e-103 379.0 293 65.9
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 4.4e-103 378.6 294 66.0
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.2e-102 376.3 276 69.6
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 4.9e-102 375.2 366 59.6
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 3.2e-101 372.5 284 64.1
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 1.6e-100 370.2 233 77.3
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 2.7e-100 369.4 273 67.0
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 5.0e-99 365.2 319 60.2
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 6.6e-99 364.8 230 76.5
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 6.6e-99 364.8 230 77.8
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 1.1e-98 364.0 282 65.6
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 4.3e-98 362.1 230 76.1
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 7.3e-98 361.3 232 75.9
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 2.8e-97 359.4 305 63.6
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 6.2e-97 358.2 316 59.8
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.1e-96 357.5 269 65.4
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 2.1e-92 343.2 259 67.6
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 3.5e-92 342.4 295 64.1
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 1.3e-91 340.5 312 59.9
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.1e-89 333.2 409 49.4
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 5.2e-88 328.6 262 64.5
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 4.9e-86 322.0 257 60.7
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 4.1e-85 318.9 195 77.4
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 3.9e-83 312.4 274 57.3
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.9e-82 310.1 199 74.9
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 4.3e-82 308.9 277 56.3
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-80 302.8 236 65.7
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 1.7e-78 297.0 230 69.1
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 3.8e-78 295.8 216 73.1
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 4.6e-76 288.9 231 65.4
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 4.5e-71 272.3 216 65.3
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 2.4e-69 266.5 196 62.8
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 4.2e-69 265.8 216 65.3
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 2.4e-64 250.0 171 73.1
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-60 236.9 159 73.6
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 2.7e-60 236.5 157 73.9
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.3e-57 227.6 180 70.6
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 8.2e-57 224.9 204 56.9
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.6e-55 219.9 173 67.1
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 3.8e-54 216.1 130 81.5
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 4.9e-54 215.7 168 67.3
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 2.9e-46 189.9 225 49.3
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.2e-44 184.5 122 69.7
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-43 181.4 157 62.4
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-43 181.4 157 63.1
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 3.9e-43 179.5 156 62.8
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 5.1e-43 179.1 157 62.4
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-42 177.2 173 57.8
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-42 176.8 157 63.1
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 3.3e-42 176.4 113 78.8
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 9.7e-42 174.9 157 61.1
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.8e-41 172.6 156 60.9
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 2.4e-40 170.2 158 59.5
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 2.0e-39 167.2 174 56.9
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 2.2e-38 163.7 98 80.6
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-37 161.0 144 61.8
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 1.6e-36 157.5 99 77.8
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.0e-35 153.3 157 57.3
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-33 146.4 94 79.8
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.4e-32 144.4 304 35.9
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-32 144.1 123 63.4
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-32 143.3 122 63.1
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-32 142.9 97 75.3
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-31 139.8 160 52.5
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 3.4e-31 139.8 160 52.5
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.2e-28 131.3 88 68.2
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 8.2e-25 118.6 156 48.7
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-24 117.9 109 59.6
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.1e-21 108.2 73 67.1
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 5.5e-21 105.9 70 77.1
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-18 97.4 158 41.8
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.1e-16 90.1 57 73.7
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-15 86.7 96 51.0
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 4.5e-15 86.3 89 55.1
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.3e-14 84.7 55 72.7
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.4e-08 64.7 115 39.1
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 4.5e-07 59.7 111 36.0
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 3.8e-06 56.6 42 59.5


User provided reference genes

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