Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 0.0e+00 1157.1 583 100.0
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 9.8e-261 903.3 584 81.3
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 5.1e-201 704.9 585 64.6
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-195 686.4 457 75.3
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-195 686.4 457 75.3
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-195 686.4 457 75.3
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.2e-195 685.3 585 60.9
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 2.1e-194 682.9 583 60.9
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 2.7e-194 682.6 652 60.7
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.5e-192 676.8 585 61.4
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.5e-192 676.8 583 60.9
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.5e-192 676.8 598 62.2
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.5e-192 676.8 463 73.0
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 3.3e-192 675.6 454 73.6
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 4.4e-192 675.2 463 73.0
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 5.7e-192 674.9 577 61.4
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 7.4e-192 674.5 577 61.2
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 9.7e-192 674.1 459 73.6
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.3e-191 673.7 463 72.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-191 673.3 589 60.3
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 2.8e-191 672.5 584 60.4
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.7e-191 672.2 577 60.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 4.8e-191 671.8 583 60.4
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 4.8e-191 671.8 584 60.8
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 6.3e-191 671.4 577 61.0
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 1.1e-190 670.6 578 61.8
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.4e-190 670.2 584 60.3
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 5.3e-190 668.3 577 60.3
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 7.0e-190 667.9 582 59.6
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 9.1e-190 667.5 579 60.4
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.5e-189 666.8 463 72.6
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.6e-189 666.0 587 60.6
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.5e-189 665.6 577 60.1
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 4.5e-189 665.2 576 60.9
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.3e-188 663.7 463 71.3
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.5e-187 660.2 585 59.7
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.5e-187 660.2 583 59.9
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.9e-187 659.8 471 70.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 5.5e-187 658.3 585 59.3
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 9.4e-187 657.5 582 60.0
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 8.0e-186 654.4 585 59.5
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 1.0e-185 654.1 583 59.2
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.4e-185 653.7 585 61.2
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.8e-185 653.3 574 59.8
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.3e-185 652.9 582 60.0
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.0e-185 652.5 588 59.2
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 3.0e-185 652.5 583 59.7
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 5.2e-185 651.7 588 58.3
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 5.2e-185 651.7 451 71.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 6.7e-185 651.4 578 59.3
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 8.8e-185 651.0 586 59.6
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-184 650.6 457 70.2
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 1.5e-184 650.2 471 68.6
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.5e-184 650.2 583 59.3
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.0e-184 649.8 584 58.9
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.0e-184 649.8 584 58.9
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 2.6e-184 649.4 583 59.5
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 3.3e-184 649.0 579 58.5
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.3e-183 647.1 571 60.4
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 2.2e-183 646.4 471 67.9
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 2.2e-183 646.4 471 67.9
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 3.7e-183 645.6 589 58.6
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 4.8e-183 645.2 583 59.2
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 4.8e-183 645.2 578 59.3
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 8.2e-183 644.4 471 68.4
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 8.2e-183 644.4 581 59.4
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 8.2e-183 644.4 583 58.5
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.1e-182 644.0 583 59.3
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.4e-182 643.7 580 59.3
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.8e-182 643.3 583 58.7
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 3.1e-182 642.5 471 67.5
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 3.1e-182 642.5 471 67.5
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 3.1e-182 642.5 582 58.9
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 7.0e-182 641.3 579 59.9
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 9.1e-182 641.0 583 59.5
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.2e-181 640.6 579 58.7
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.2e-181 640.6 577 59.3
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.6e-181 640.2 624 55.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.6e-181 640.2 578 58.5
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 2.7e-181 639.4 586 59.2
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.5e-181 639.0 583 58.8
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.5e-181 639.0 583 58.7
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 4.5e-181 638.6 572 59.4
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 5.9e-181 638.3 482 67.4
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 7.7e-181 637.9 582 59.3
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 7.7e-181 637.9 471 68.6
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.0e-180 637.5 583 58.7
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.9e-180 636.0 584 58.6
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 5.0e-180 635.2 471 67.5
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 8.5e-180 634.4 598 57.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.5e-179 633.6 578 57.6
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 9.4e-179 630.9 578 58.3
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.7e-178 629.4 471 68.6
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 3.6e-178 629.0 461 68.5
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.4e-177 627.1 482 66.8
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 6.8e-177 624.8 474 66.9
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.8e-177 624.8 581 57.5
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 6.8e-177 624.8 581 57.5
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.1e-174 615.9 580 56.6
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.2e-173 614.0 584 56.8
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 2.7e-173 612.8 576 56.2
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 3.5e-173 612.5 582 56.2
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 3.5e-173 612.5 614 54.9
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.0e-169 600.9 580 57.1
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 2.3e-169 599.7 574 56.4
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 3.4e-168 595.9 581 53.4
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 4.4e-168 595.5 558 56.3
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.7e-167 593.6 582 53.8
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.1e-166 590.9 471 61.8
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 4.1e-166 589.0 606 53.5
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 4.1e-166 589.0 577 54.8
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 5.6e-163 578.6 577 53.2
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.0e-161 574.3 611 53.4
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 5.2e-161 572.0 582 53.4
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 5.7e-160 568.5 456 64.5
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 7.5e-160 568.2 553 55.5
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.1e-158 562.4 463 63.9
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 9.2e-158 561.2 581 53.0
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.7e-157 559.7 584 53.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 3.0e-156 556.2 454 64.3
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 7.3e-155 551.6 583 53.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 4.9e-151 538.9 430 61.6
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.1e-150 537.7 577 51.5
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 5.4e-150 535.4 587 50.6
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.7e-148 530.4 471 58.8
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.3e-147 526.2 489 57.7
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.3e-145 520.0 595 51.3
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.2e-143 513.5 486 60.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 3.7e-143 512.7 462 58.4
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-141 506.9 345 74.2
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.7e-138 495.7 358 69.3
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 3.2e-134 483.0 362 70.2
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.1e-130 470.3 361 68.4
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.4e-126 457.6 471 54.1
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 5.4e-126 455.7 366 64.5
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.5e-125 453.0 452 55.3
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.7e-124 450.7 490 50.8
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 2.4e-118 430.3 637 42.2
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.1e-117 427.2 306 69.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.3e-115 419.9 280 74.6
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 3.4e-112 409.8 435 52.0
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 4.9e-111 406.0 369 59.3
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-110 404.8 272 74.6
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-104 384.0 369 58.5
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.1e-102 378.3 275 68.4
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 5.3e-81 306.2 233 66.1
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 1.8e-76 291.2 249 63.9
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.4e-75 285.8 189 74.6
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.6e-72 278.1 484 36.2
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 7.5e-67 259.2 217 63.6
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.0e-60 237.3 145 78.6
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 4.0e-60 236.9 200 59.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 2.6e-51 207.6 229 50.7
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 6.3e-50 203.0 256 46.1
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.3e-47 195.3 152 65.8
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.1e-46 192.2 126 75.4
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.6e-40 171.8 114 69.3
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.0e-40 171.4 260 44.6
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 2.3e-36 157.9 238 42.0
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 8.9e-36 156.0 114 65.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 2.6e-35 154.5 123 61.8
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 1.7e-34 151.8 226 41.2
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 8.3e-34 149.4 207 45.4
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.4e-33 147.9 95 71.6
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.4e-33 147.9 95 71.6
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 7.0e-33 146.4 114 65.8
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 2.5e-22 111.3 97 61.9
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 4.7e-21 107.1 67 77.6
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.8e-18 97.4 65 75.4
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.2e-17 94.4 65 72.3
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 3.2e-17 94.4 105 52.4
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 9.2e-17 92.8 65 70.8
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 9.2e-17 92.8 65 76.9
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 2.7e-16 91.3 187 37.4
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.5e-14 84.7 77 61.0
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-09 69.3 38 78.9
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 7.1e-09 66.6 67 56.7
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.9e-06 58.5 159 29.6
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 7.3e-06 56.6 158 29.1
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 9.6e-06 56.2 160 30.6


User provided reference genes

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