Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.8e-99 365.9 181 100.0
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 7.4e-66 254.2 147 87.1
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 1.4e-48 196.8 117 84.6
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 2.0e-47 193.0 121 82.6
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 2.7e-47 192.6 117 82.9
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 8.0e-44 181.0 117 77.8
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 8.0e-44 181.0 112 78.6
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.4e-43 180.3 119 73.9
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 1.8e-43 179.9 118 77.1
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 2.3e-43 179.5 121 76.9
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 2.3e-43 179.5 117 74.4
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 2.3e-43 179.5 115 77.4
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 2.3e-43 179.5 115 77.4
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 5.2e-43 178.3 129 72.9
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 6.8e-43 177.9 121 74.4
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 2.0e-42 176.4 122 74.6
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 2.6e-42 176.0 121 73.6
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 3.4e-42 175.6 114 76.3
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 3.4e-42 175.6 118 74.6
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 3.4e-42 175.6 121 74.4
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 3.4e-42 175.6 115 76.5
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 5.7e-42 174.9 118 72.9
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 7.5e-42 174.5 115 78.3
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 9.8e-42 174.1 120 75.0
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 1.3e-41 173.7 117 71.8
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 2.2e-41 172.9 120 74.2
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 2.8e-41 172.6 120 72.5
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.8e-41 172.6 119 74.8
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 2.8e-41 172.6 124 71.8
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 4.9e-41 171.8 117 71.8
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 8.3e-41 171.0 126 70.6
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 1.1e-40 170.6 110 79.1
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 1.4e-40 170.2 125 69.6
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 2.4e-40 169.5 121 67.8
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 3.1e-40 169.1 121 73.6
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 3.1e-40 169.1 124 71.0
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 4.1e-40 168.7 121 66.9
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 4.1e-40 168.7 121 66.9
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 4.1e-40 168.7 124 70.2
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 5.4e-40 168.3 121 66.9
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 5.4e-40 168.3 105 80.0
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 7.0e-40 167.9 119 73.1
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 7.0e-40 167.9 123 70.7
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 9.2e-40 167.5 113 69.9
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 9.2e-40 167.5 113 69.9
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 9.2e-40 167.5 124 71.0
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 1.2e-39 167.2 112 74.1
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 2.7e-39 166.0 123 69.1
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 3.5e-39 165.6 124 68.5
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 3.5e-39 165.6 108 75.0
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 5.9e-39 164.9 123 64.2
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 5.9e-39 164.9 111 73.9
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 5.9e-39 164.9 108 73.1
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 7.8e-39 164.5 118 69.5
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 7.8e-39 164.5 113 69.0
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 1.0e-38 164.1 111 73.9
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 1.0e-38 164.1 124 67.7
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 1.3e-38 163.7 124 67.7
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 1.7e-38 163.3 113 68.1
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 2.3e-38 162.9 124 69.4
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 2.3e-38 162.9 118 73.7
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 2.9e-38 162.5 111 73.0
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 3.9e-38 162.2 105 77.1
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 3.9e-38 162.2 100 80.0
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 5.0e-38 161.8 114 68.4
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 6.6e-38 161.4 126 65.9
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 1.5e-37 160.2 116 69.0
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 1.5e-37 160.2 92 80.4
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 3.3e-37 159.1 113 67.3
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 3.3e-37 159.1 115 67.0
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 2.1e-36 156.4 92 80.4
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 2.8e-36 156.0 122 64.8
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 3.6e-36 155.6 105 70.5
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 4.7e-36 155.2 119 67.2
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 6.1e-36 154.8 108 70.4
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 6.1e-36 154.8 123 64.2
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 1.0e-35 154.1 93 78.5
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 1.8e-35 153.3 84 85.7
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 2.3e-35 152.9 128 59.4
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 3.1e-35 152.5 103 68.9
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 1.1e-32 144.1 84 83.3
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 1.4e-32 143.7 102 64.7
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 5.4e-32 141.7 85 75.3
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 2.0e-31 139.8 117 64.1
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 1.5e-26 123.6 112 55.4
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 1.5e-26 123.6 84 71.4
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 3.4e-26 122.5 88 67.0
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 9.8e-26 120.9 137 48.9
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 5.4e-24 115.2 86 68.6
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 2.1e-23 113.2 77 75.3
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 1.3e-22 110.5 86 68.6
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 3.9e-22 109.0 95 63.2
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 6.2e-20 101.7 103 53.4
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 5.8e-18 95.1 97 56.7
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 2.9e-17 92.8 66 68.2
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 4.9e-17 92.0 77 66.2
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 1.4e-16 90.5 83 62.7
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 2.1e-15 86.7 77 61.0
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 4.6e-15 85.5 65 64.6
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 6.6e-14 81.6 42 83.3
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 8.6e-14 81.3 51 78.4
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 1.5e-13 80.5 69 56.5
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.9e-13 80.1 84 52.4
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 7.3e-13 78.2 81 54.3
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 3.6e-12 75.9 63 61.9
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 6.6e-06 55.1 86 44.2
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 8.7e-06 54.7 30 73.3


User provided reference genes

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