Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 4.8e-289 997.3 563 100.0
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 5.2e-150 535.4 761 49.7
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.4e-125 452.6 753 45.7
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 6.6e-121 438.7 769 44.5
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.5e-117 427.6 742 45.1
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.3e-100 371.3 219 96.3
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.2e-91 340.1 198 92.9
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.8e-76 290.0 768 37.2
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.7e-53 214.2 724 33.0
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.6e-50 204.9 534 39.0
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 8.0e-50 202.6 496 39.1
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.8e-49 201.4 496 39.1
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.3e-49 201.1 466 40.1
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 5.2e-49 199.9 423 38.3
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.2e-49 199.9 409 40.1
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.7e-48 196.4 405 39.8
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.8e-47 194.1 413 38.7
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 6.3e-47 193.0 495 38.0
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.4e-46 191.8 471 38.6
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.0e-46 189.5 483 39.1
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 2.0e-45 188.0 526 35.6
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.3e-44 184.5 639 31.3
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 2.3e-44 184.5 529 34.8
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 6.6e-44 183.0 440 37.7
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 8.6e-44 182.6 480 37.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.1e-43 182.2 424 38.4
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.5e-43 181.0 521 36.3
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.2e-43 180.3 424 38.0
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 5.6e-43 179.9 536 35.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 9.5e-43 179.1 729 30.0
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.8e-42 177.6 403 39.5
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.0e-41 175.6 719 32.4
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 5.2e-41 173.3 519 35.5
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 5.2e-41 173.3 400 38.8
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.4e-40 170.6 416 37.0
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 9.8e-40 169.1 445 36.2
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 9.8e-40 169.1 345 40.0
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.3e-39 168.7 458 35.8
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.3e-39 168.7 369 38.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 4.9e-39 166.8 744 31.2
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 6.4e-39 166.4 394 37.6
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 8.3e-39 166.0 468 35.9
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.4e-38 165.2 679 29.7
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.8e-38 164.9 701 32.4
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 2.4e-38 164.5 655 30.5
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 7.0e-38 162.9 416 36.3
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 9.2e-38 162.5 429 36.4
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.6e-37 161.8 636 29.7
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.3e-36 158.7 411 36.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.0e-36 157.5 381 35.4
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 3.9e-36 157.1 412 35.2
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.1e-35 155.6 164 58.5
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 4.3e-35 153.7 370 39.7
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 7.3e-35 152.9 471 35.5
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 6.2e-34 149.8 418 36.4
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.2e-34 149.8 631 28.8
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 8.0e-34 149.4 631 28.7
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.0e-33 149.1 419 35.3
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.0e-33 149.1 529 33.3
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.0e-33 149.1 740 29.1
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 2.3e-33 147.9 424 34.7
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.1e-33 147.5 388 36.1
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 4.0e-33 147.1 387 34.6
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.9e-33 146.0 632 29.6
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 8.9e-33 146.0 632 29.6
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 8.9e-33 146.0 689 28.6
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.0e-32 144.8 683 29.3
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 2.6e-32 144.4 507 33.9
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 9.8e-32 142.5 404 34.4
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.7e-31 141.7 721 27.9
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.7e-31 141.7 711 28.1
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 3.7e-31 140.6 432 37.3
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.4e-31 139.8 620 31.5
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.4e-31 139.8 639 31.9
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 8.3e-31 139.4 378 36.8
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 1.1e-30 139.0 469 31.8
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 1.4e-30 138.7 745 28.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 3.2e-30 137.5 515 30.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 4.1e-30 137.1 454 36.1
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 4.1e-30 137.1 386 35.5
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 5.4e-30 136.7 213 46.9
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 9.2e-30 136.0 398 37.4
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 9.2e-30 136.0 439 33.9
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 1.2e-29 135.6 382 35.6
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 1.6e-29 135.2 190 48.4
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.7e-29 134.4 624 28.5
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.7e-29 134.4 464 33.4
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.0e-28 132.5 443 33.4
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.7e-28 131.7 335 36.4
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 8.6e-28 129.4 406 33.5
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 8.6e-28 129.4 387 35.1
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 3.3e-27 127.5 430 31.2
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.8e-26 124.4 678 27.3
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.8e-26 124.4 707 30.8
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 3.6e-26 124.0 389 34.4
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 6.2e-26 123.2 615 28.3
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.4e-25 122.1 377 33.4
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.8e-25 121.7 649 28.5
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.3e-25 121.3 401 32.9
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.0e-24 118.2 375 36.0
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 3.4e-24 117.5 499 30.7
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 4.4e-24 117.1 388 31.7
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 5.8e-24 116.7 613 30.2
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 5.8e-24 116.7 359 33.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.7e-23 115.2 715 27.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 3.7e-23 114.0 598 30.8
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 4.9e-23 113.6 699 27.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 6.4e-23 113.2 588 27.7
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.9e-22 111.7 438 31.5
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 9.2e-22 109.4 501 34.3
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.7e-21 107.8 377 35.3
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 7.8e-21 106.3 202 40.1
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.3e-20 105.5 476 29.4
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.3e-20 104.8 440 30.5
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 3.0e-20 104.4 514 32.5
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.9e-20 104.0 395 35.2
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 8.6e-20 102.8 599 30.4
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 8.6e-20 102.8 405 30.4
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.5e-19 102.1 585 29.7
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 3.3e-19 100.9 463 27.4
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 5.6e-19 100.1 544 27.4
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.6e-18 98.6 374 33.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.8e-18 97.8 604 29.0
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 3.1e-17 94.4 345 31.0
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 8.9e-17 92.8 128 46.9
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.7e-15 88.6 691 26.2
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 3.7e-15 87.4 338 30.2
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 4.9e-15 87.0 509 27.1
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 6.4e-15 86.7 458 30.6
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.4e-14 84.7 370 29.7
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 4.1e-14 84.0 310 32.3
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-13 82.4 537 26.6
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 2.1e-13 81.6 292 33.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 6.0e-13 80.1 527 29.8
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-12 79.0 485 28.2
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 1.3e-12 79.0 158 39.9
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-11 75.9 117 49.6
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.9e-11 75.1 398 28.6
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.9e-11 75.1 140 44.3
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 2.8e-10 71.2 296 32.1
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 3.6e-10 70.9 541 28.3
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.1e-09 69.3 543 26.2
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 4.0e-09 67.4 369 28.5
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 1.2e-08 65.9 351 27.4
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.5e-08 65.5 100 45.0
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.4e-08 64.3 535 28.8
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 5.8e-08 63.5 361 28.8
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 9.9e-08 62.8 269 26.8
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.7e-07 62.0 371 29.4
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.7e-07 62.0 371 29.4
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.4e-06 58.2 111 41.4
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.2e-06 57.8 131 39.7
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.2e-06 57.8 56 62.5
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 5.4e-06 57.0 100 50.0
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.4e-06 57.0 343 27.1


User provided reference genes

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